Wall clock time and date at job start Mon Mar 30 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99988 * 2 1 4 4 C 1.38734 * 120.05401 * 359.72629 * 3 2 1 5 5 C 1.38151 * 119.93935 * 179.74158 * 4 3 2 6 6 C 1.38262 * 120.05526 * 0.51378 * 5 4 3 7 7 C 1.50704 * 119.94183 * 179.74068 * 6 5 4 8 8 H 1.09002 * 110.89440 * 156.10521 * 7 6 5 9 9 C 1.54782 * 111.02111 * 280.01819 * 7 6 5 10 10 N 1.47581 * 102.10542 * 141.72584 * 9 7 6 11 11 C 1.30635 * 108.34065 * 345.01042 * 10 9 7 12 12 C 1.41256 * 123.22642 * 179.39248 * 11 10 9 13 13 H 1.07993 * 120.00185 * 174.05476 * 12 11 10 14 14 C 1.40220 * 119.99789 * 354.04825 * 12 11 10 15 15 N 1.30596 * 120.00073 * 6.11477 * 14 12 11 16 16 Si 1.86800 * 119.99759 * 186.11146 * 14 12 11 17 17 H 1.48498 * 109.47147 * 94.98445 * 16 14 12 18 18 H 1.48505 * 109.46941 * 214.98427 * 16 14 12 19 19 H 1.48499 * 109.47192 * 334.98495 * 16 14 12 20 20 O 1.35199 * 113.54803 * 359.37580 * 11 10 9 21 21 C 1.38267 * 120.11597 * 359.76530 * 6 5 4 22 22 C 1.38150 * 120.05247 * 359.97438 * 21 6 5 23 23 H 1.08992 * 109.47200 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47246 * 59.99825 * 1 2 3 25 25 H 1.09002 * 109.47193 * 300.00032 * 1 2 3 26 26 H 1.07994 * 120.02654 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.96958 * 180.22870 * 5 4 3 28 28 H 1.08992 * 110.90608 * 259.93092 * 9 7 6 29 29 H 1.09005 * 110.90073 * 23.49278 * 9 7 6 30 30 H 0.97005 * 120.00077 * 180.02562 * 15 14 12 31 31 H 1.07997 * 119.97882 * 180.02562 * 21 6 5 32 32 H 1.08003 * 120.02709 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3752 -0.0057 5 6 1.9211 3.6048 -0.0003 6 6 3.3019 3.6758 0.0001 7 6 3.9861 5.0186 0.0001 8 1 4.9920 4.9423 0.4129 9 6 4.0146 5.6272 -1.4228 10 7 3.7789 7.0587 -1.1519 11 6 3.3336 7.1778 0.0704 12 6 3.0162 8.4212 0.6607 13 1 2.5617 8.4538 1.6398 14 6 3.2914 9.6132 -0.0245 15 7 3.7295 9.5734 -1.2541 16 14 3.0313 11.2582 0.8216 17 1 4.3129 11.7181 1.4143 18 1 2.5589 12.2563 -0.1714 19 1 2.0155 11.1080 1.8943 20 8 3.2051 5.9969 0.7160 21 6 4.0562 2.5170 -0.0001 22 6 3.4313 1.2848 0.0000 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 0.2130 2.3201 -0.0106 27 1 1.3342 4.5115 -0.0011 28 1 4.9868 5.4749 -1.8915 29 1 3.2180 5.2112 -2.0397 30 1 3.9203 10.3980 -1.7280 31 1 5.1346 2.5750 0.0007 32 1 4.0209 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260913608.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:33 Heat of formation + Delta-G solvation = -24.431938 kcal Electronic energy + Delta-G solvation = -17138.111012 eV Core-core repulsion = 14257.819938 eV Total energy + Delta-G solvation = -2880.291073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16934 -39.26014 -37.15276 -33.57324 -31.58743 -31.06121 -30.80769 -28.33964 -27.17736 -25.19880 -22.66785 -22.16459 -20.64563 -19.88085 -18.07468 -16.80715 -16.29868 -15.73702 -15.60654 -15.23278 -14.84910 -14.37432 -13.81065 -13.51664 -13.10522 -12.69020 -12.55255 -12.28826 -11.97303 -11.91228 -11.39568 -11.30163 -11.17802 -10.71027 -10.63750 -10.52558 -10.35682 -10.00825 -9.15145 -8.81769 -8.20566 -7.60497 -7.38499 -6.43091 -4.64750 1.51482 1.60369 3.07555 3.16100 3.20354 3.28102 3.88172 4.02111 4.15434 4.73972 4.89302 5.00517 5.05902 5.13948 5.23596 5.34575 5.48170 5.58753 5.59029 5.83928 5.85270 5.96836 6.26066 6.40787 6.54738 6.58547 6.77904 6.87910 6.92009 6.97823 7.34127 7.45812 7.74804 8.21639 8.77607 8.96732 10.08721 10.48249 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.048349 B = 0.004682 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.979104 B = 5978.520986 C = 6251.001666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.114 3.886 4 C -0.207 4.207 5 C -0.055 4.055 6 C -0.100 4.100 7 C 0.088 3.912 8 H 0.076 0.924 9 C 0.015 3.985 10 N -0.597 5.597 11 C 0.374 3.626 12 C -0.452 4.452 13 H 0.084 0.916 14 C 0.078 3.922 15 N -0.733 5.733 16 Si 0.918 3.082 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.262 1.262 20 O -0.365 6.365 21 C -0.076 4.076 22 C -0.153 4.153 23 H 0.096 0.904 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.272 0.728 31 H 0.129 0.871 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -12.740 2.067 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.069 3.931 4 C -0.226 4.226 5 C -0.073 4.073 6 C -0.100 4.100 7 C 0.029 3.971 8 H 0.093 0.907 9 C -0.116 4.116 10 N -0.343 5.343 11 C 0.174 3.826 12 C -0.490 4.490 13 H 0.102 0.898 14 C -0.146 4.146 15 N -0.358 5.358 16 Si 0.742 3.258 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.186 1.186 20 O -0.273 6.273 21 C -0.094 4.094 22 C -0.171 4.171 23 H 0.115 0.885 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.248 -12.499 1.296 12.979 hybrid contribution -0.382 0.165 0.725 0.836 sum -3.630 -12.333 2.021 13.014 Atomic orbital electron populations 1.23010 0.78732 1.03509 1.01455 1.86024 1.21144 1.27239 1.89154 1.18999 0.92372 0.83909 0.97785 1.21212 0.99828 0.92230 1.09287 1.20874 0.94283 0.97192 0.94941 1.19754 0.93963 0.94131 1.02191 1.22525 0.93072 0.86028 0.95452 0.90659 1.23853 0.99710 0.94479 0.93518 1.76227 1.37579 1.06643 1.13878 1.22033 0.89256 0.84284 0.87017 1.18550 1.40452 0.86354 1.03674 0.89826 1.25742 0.93883 1.00515 0.94490 1.70026 1.28306 1.28715 1.08789 0.86164 0.79357 0.80643 0.79670 1.19607 1.20252 1.18623 1.86953 1.67158 1.19294 1.53925 1.20716 0.99777 0.90706 0.98217 1.20274 0.91231 0.98208 1.07419 0.88545 0.92717 0.92706 0.85659 0.85179 0.92336 0.93548 0.91664 0.85317 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.23 10.50 -19.44 -0.20 -4.43 16 3 C 0.11 1.68 6.69 -39.22 -0.26 1.42 16 4 C -0.21 -3.14 9.04 -39.43 -0.36 -3.50 16 5 C -0.05 -0.99 9.38 -39.60 -0.37 -1.36 16 6 C -0.10 -1.85 5.02 -104.60 -0.52 -2.37 16 7 C 0.09 1.92 3.94 -26.94 -0.11 1.81 16 8 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 9 C 0.02 0.36 7.67 -2.51 -0.02 0.34 16 10 N -0.60 -17.15 9.71 -59.54 -0.58 -17.73 16 11 C 0.37 10.64 7.43 -16.91 -0.13 10.52 16 12 C -0.45 -12.65 9.50 -37.69 -0.36 -13.01 16 13 H 0.08 2.21 7.86 -52.49 -0.41 1.80 16 14 C 0.08 2.06 5.49 -17.33 -0.10 1.96 16 15 N -0.73 -20.47 11.76 55.56 0.65 -19.82 16 16 Si 0.92 19.26 29.56 -169.99 -5.03 14.23 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 20 O -0.36 -9.38 10.06 -17.29 -0.17 -9.55 16 21 C -0.08 -1.17 9.70 -39.60 -0.38 -1.56 16 22 C -0.15 -2.20 9.99 -39.43 -0.39 -2.59 16 23 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 25 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 26 H 0.13 1.58 6.30 -52.49 -0.33 1.25 16 27 H 0.13 2.53 7.61 -52.49 -0.40 2.13 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.05 1.09 7.91 -51.93 -0.41 0.68 16 30 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 280.33 15.07 4.22 4.22 Total: -1.00 -31.73 280.33 -6.70 -38.43 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.59 Total: 1.72 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.01 Total: -7.08 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.08 Total: -37.54 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.38 Total: -13.98 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.73 -6.70 -38.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260913608.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.000 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds