Wall clock time and date at job start Mon Mar 30 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99988 * 2 1 4 4 C 1.38734 * 120.05401 * 359.72629 * 3 2 1 5 5 C 1.38151 * 119.93935 * 179.74158 * 4 3 2 6 6 C 1.38262 * 120.05526 * 0.51378 * 5 4 3 7 7 C 1.50704 * 119.94183 * 179.74068 * 6 5 4 8 8 H 1.09002 * 110.89440 * 156.10521 * 7 6 5 9 9 C 1.54782 * 111.02111 * 280.01819 * 7 6 5 10 10 N 1.47581 * 102.10542 * 141.72584 * 9 7 6 11 11 C 1.30635 * 108.34065 * 345.01042 * 10 9 7 12 12 C 1.41256 * 123.22642 * 179.39248 * 11 10 9 13 13 H 1.07993 * 120.00185 * 174.05476 * 12 11 10 14 14 C 1.40220 * 119.99789 * 354.04825 * 12 11 10 15 15 N 1.30596 * 120.00073 * 6.11477 * 14 12 11 16 16 Si 1.86800 * 119.99759 * 186.11146 * 14 12 11 17 17 H 1.48498 * 109.47147 * 94.98445 * 16 14 12 18 18 H 1.48505 * 109.46941 * 214.98427 * 16 14 12 19 19 H 1.48499 * 109.47192 * 334.98495 * 16 14 12 20 20 O 1.35199 * 113.54803 * 359.37580 * 11 10 9 21 21 C 1.38267 * 120.11597 * 359.76530 * 6 5 4 22 22 C 1.38150 * 120.05247 * 359.97438 * 21 6 5 23 23 H 1.08992 * 109.47200 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47246 * 59.99825 * 1 2 3 25 25 H 1.09002 * 109.47193 * 300.00032 * 1 2 3 26 26 H 1.07994 * 120.02654 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.96958 * 180.22870 * 5 4 3 28 28 H 1.08992 * 110.90608 * 259.93092 * 9 7 6 29 29 H 1.09005 * 110.90073 * 23.49278 * 9 7 6 30 30 H 0.97005 * 120.00077 * 180.02562 * 15 14 12 31 31 H 1.07997 * 119.97882 * 180.02562 * 21 6 5 32 32 H 1.08003 * 120.02709 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3752 -0.0057 5 6 1.9211 3.6048 -0.0003 6 6 3.3019 3.6758 0.0001 7 6 3.9861 5.0186 0.0001 8 1 4.9920 4.9423 0.4129 9 6 4.0146 5.6272 -1.4228 10 7 3.7789 7.0587 -1.1519 11 6 3.3336 7.1778 0.0704 12 6 3.0162 8.4212 0.6607 13 1 2.5617 8.4538 1.6398 14 6 3.2914 9.6132 -0.0245 15 7 3.7295 9.5734 -1.2541 16 14 3.0313 11.2582 0.8216 17 1 4.3129 11.7181 1.4143 18 1 2.5589 12.2563 -0.1714 19 1 2.0155 11.1080 1.8943 20 8 3.2051 5.9969 0.7160 21 6 4.0562 2.5170 -0.0001 22 6 3.4313 1.2848 0.0000 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 0.2130 2.3201 -0.0106 27 1 1.3342 4.5115 -0.0011 28 1 4.9868 5.4749 -1.8915 29 1 3.2180 5.2112 -2.0397 30 1 3.9203 10.3980 -1.7280 31 1 5.1346 2.5750 0.0007 32 1 4.0209 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260913608.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:32 Heat of formation + Delta-G solvation = -47.650982 kcal Electronic energy + Delta-G solvation = -17139.117865 eV Core-core repulsion = 14257.819938 eV Total energy + Delta-G solvation = -2881.297927 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.65332 -40.77428 -38.37927 -35.58035 -33.45214 -32.65104 -32.09575 -29.93933 -28.30707 -26.93102 -24.17061 -23.52811 -22.35903 -21.64535 -19.16617 -18.80108 -17.74394 -17.30048 -16.93884 -16.65665 -16.38086 -15.68718 -15.52037 -14.63812 -14.40599 -14.24014 -14.14573 -13.83284 -13.73825 -13.19597 -13.01788 -12.81846 -12.61288 -12.37075 -12.25344 -11.88996 -11.83965 -11.79004 -11.07435 -10.04387 -10.01426 -9.45973 -9.06495 -8.42188 -6.79338 0.29474 0.32948 1.40743 1.44206 1.60961 2.10933 2.25669 2.33157 2.62663 3.04977 3.30309 3.75208 3.86259 3.89257 3.97805 4.15430 4.32252 4.38185 4.41115 4.51873 4.65687 4.66341 4.72557 4.88694 4.93292 5.02842 5.19306 5.29770 5.34821 5.55246 5.68567 5.83865 6.12174 6.38631 6.70414 6.87124 8.02514 8.51311 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.048349 B = 0.004682 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.979104 B = 5978.520986 C = 6251.001666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.120 3.880 4 C -0.205 4.205 5 C -0.074 4.074 6 C -0.126 4.126 7 C 0.093 3.907 8 H 0.085 0.915 9 C 0.015 3.985 10 N -0.639 5.639 11 C 0.355 3.645 12 C -0.487 4.487 13 H 0.088 0.912 14 C 0.032 3.968 15 N -0.774 5.774 16 Si 1.004 2.996 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.254 1.254 20 O -0.379 6.379 21 C -0.069 4.069 22 C -0.149 4.149 23 H 0.125 0.875 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.148 0.852 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.281 0.719 31 H 0.153 0.847 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.744 -13.874 2.776 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.075 3.925 4 C -0.224 4.224 5 C -0.093 4.093 6 C -0.127 4.127 7 C 0.035 3.965 8 H 0.103 0.897 9 C -0.116 4.116 10 N -0.386 5.386 11 C 0.155 3.845 12 C -0.525 4.525 13 H 0.106 0.894 14 C -0.189 4.189 15 N -0.399 5.399 16 Si 0.823 3.177 17 H -0.186 1.186 18 H -0.190 1.190 19 H -0.177 1.177 20 O -0.287 6.287 21 C -0.087 4.087 22 C -0.168 4.168 23 H 0.144 0.856 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.165 0.835 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.170 0.830 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.503 -13.674 2.003 14.257 hybrid contribution -0.356 0.323 0.463 0.668 sum -3.859 -13.350 2.466 14.114 Atomic orbital electron populations 1.23357 0.76579 1.05741 1.02084 1.86036 1.23347 1.26065 1.88608 1.19162 0.92799 0.84315 0.96269 1.21339 1.01079 0.91317 1.08649 1.20751 0.94235 0.97451 0.96819 1.19607 0.94304 0.93314 1.05450 1.22612 0.93679 0.86801 0.93420 0.89744 1.23812 1.00025 0.92754 0.95007 1.76129 1.38234 1.09816 1.14416 1.22356 0.89394 0.85265 0.87459 1.19054 1.41611 0.87385 1.04410 0.89370 1.26867 0.92598 1.04440 0.94963 1.70131 1.28730 1.30529 1.10553 0.84891 0.79707 0.74567 0.78562 1.18567 1.19038 1.17735 1.86915 1.67913 1.19422 1.54477 1.20924 1.00850 0.89937 0.96945 1.20616 0.91501 0.98713 1.05945 0.85648 0.92109 0.92037 0.83474 0.87919 0.91172 0.93920 0.90829 0.82972 0.82453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.57 10.50 -92.49 -0.97 -8.54 16 3 C 0.12 3.25 6.69 22.51 0.15 3.40 16 4 C -0.21 -6.01 9.04 22.37 0.20 -5.81 16 5 C -0.07 -2.72 9.38 22.25 0.21 -2.51 16 6 C -0.13 -4.68 5.02 -19.85 -0.10 -4.78 16 7 C 0.09 4.15 3.94 30.46 0.12 4.27 16 8 H 0.08 3.52 8.09 -2.39 -0.02 3.50 16 9 C 0.01 0.72 7.67 86.78 0.67 1.39 16 10 N -0.64 -38.13 9.71 -456.22 -4.43 -42.56 16 11 C 0.36 21.04 7.43 85.61 0.64 21.67 16 12 C -0.49 -28.05 9.50 23.49 0.22 -27.82 16 13 H 0.09 4.79 7.86 -2.91 -0.02 4.77 16 14 C 0.03 1.70 5.49 85.36 0.47 2.17 16 15 N -0.77 -44.10 11.76 21.87 0.26 -43.84 16 16 Si 1.00 39.42 29.56 68.60 2.03 41.44 16 17 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 18 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 19 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 20 O -0.38 -20.29 10.06 -84.79 -0.85 -21.14 16 21 C -0.07 -2.00 9.70 22.26 0.22 -1.79 16 22 C -0.15 -3.88 9.99 22.37 0.22 -3.65 16 23 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 0.87 7.65 -2.38 -0.02 0.85 16 25 H 0.06 0.87 7.67 -2.39 -0.02 0.86 16 26 H 0.15 3.51 6.30 -2.91 -0.02 3.49 16 27 H 0.10 4.25 7.61 -2.91 -0.02 4.23 16 28 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.04 2.08 7.91 -2.38 -0.02 2.06 16 30 H 0.28 14.37 8.29 -92.70 -0.77 13.60 16 31 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -70.67 280.33 1.28 -69.38 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.13 Total: 17.35 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 4.13 Total: -12.10 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -4.17 Total: -86.40 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.82 Total: -29.68 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.44 kcal Total: -70.67 1.28 -69.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260913608.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.733 kcal (2) G-P(sol) polarization free energy of solvation -70.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds