Wall clock time and date at job start Mon Mar 30 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38735 * 120.05185 * 359.72806 * 3 2 1 5 5 C 1.38150 * 119.93781 * 179.69644 * 4 3 2 6 6 C 1.38260 * 120.05694 * 0.59747 * 5 4 3 7 7 C 1.50701 * 119.94313 * 179.70047 * 6 5 4 8 8 H 1.08997 * 110.89549 * 205.68466 * 7 6 5 9 9 C 1.54783 * 111.01942 * 81.76577 * 7 6 5 10 10 N 1.47648 * 102.07482 * 218.30292 * 9 7 6 11 11 C 1.30634 * 108.35812 * 14.93454 * 10 9 7 12 12 C 1.41249 * 123.22933 * 180.64304 * 11 10 9 13 13 H 1.08005 * 120.00069 * 180.02562 * 12 11 10 14 14 C 1.40216 * 119.99904 * 0.02562 * 12 11 10 15 15 N 1.30598 * 120.00167 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99820 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47464 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46944 * 120.00481 * 16 14 12 19 19 H 1.48504 * 109.47377 * 240.00094 * 16 14 12 20 20 O 1.35195 * 113.54442 * 0.66597 * 11 10 9 21 21 C 1.38268 * 120.11154 * 359.68338 * 6 5 4 22 22 C 1.38145 * 120.05618 * 0.02562 * 21 6 5 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 26 26 H 1.07999 * 120.03086 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.96474 * 180.31869 * 5 4 3 28 28 H 1.09005 * 110.89994 * 336.47249 * 9 7 6 29 29 H 1.08991 * 110.90527 * 100.07232 * 9 7 6 30 30 H 0.97000 * 120.00204 * 180.02562 * 15 14 12 31 31 H 1.08001 * 119.97082 * 179.97438 * 21 6 5 32 32 H 1.08001 * 120.02745 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3751 -0.0057 5 6 1.9213 3.6047 0.0007 6 6 3.3021 3.6757 0.0002 7 6 3.9863 5.0184 0.0003 8 1 4.9802 4.9483 -0.4414 9 6 4.0544 5.6067 1.4304 10 7 3.8108 7.0422 1.1858 11 6 3.3325 7.1784 -0.0222 12 6 2.9995 8.4298 -0.5863 13 1 2.6069 8.4819 -1.5912 14 6 3.1787 9.6044 0.1581 15 7 3.6540 9.5415 1.3729 16 14 2.7377 11.2593 -0.5877 17 1 2.2228 11.0597 -1.9662 18 1 1.6928 11.9129 0.2406 19 1 3.9464 12.1211 -0.6303 20 8 3.1863 6.0066 -0.6804 21 6 4.0562 2.5168 0.0000 22 6 3.4314 1.2847 -0.0003 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2130 2.3202 -0.0106 27 1 1.3343 4.5113 0.0014 28 1 3.2748 5.1823 2.0630 29 1 5.0392 5.4480 1.8697 30 1 3.7776 10.3540 1.8881 31 1 5.1346 2.5749 -0.0008 32 1 4.0209 0.3798 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260913610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:35 Heat of formation + Delta-G solvation = -24.374888 kcal Electronic energy + Delta-G solvation = -17141.236014 eV Core-core repulsion = 14260.947415 eV Total energy + Delta-G solvation = -2880.288600 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16651 -39.25596 -37.15054 -33.57601 -31.58377 -31.06130 -30.79840 -28.33654 -27.17689 -25.19999 -22.65240 -22.17453 -20.64177 -19.88102 -18.07288 -16.80388 -16.29424 -15.73451 -15.61617 -15.23215 -14.84947 -14.37254 -13.80341 -13.51638 -13.10737 -12.68163 -12.54620 -12.28864 -11.96952 -11.90759 -11.38946 -11.30834 -11.17710 -10.71476 -10.64124 -10.49476 -10.36959 -9.99941 -9.16458 -8.81567 -8.20084 -7.60079 -7.38583 -6.42436 -4.65049 1.51705 1.60724 3.06333 3.16188 3.21469 3.28261 3.88812 4.02218 4.14671 4.74055 4.89523 5.00775 5.06025 5.14379 5.25964 5.34656 5.47660 5.58517 5.59211 5.84073 5.85299 5.97159 6.26298 6.41067 6.55027 6.58878 6.78115 6.88173 6.91919 6.98012 7.34082 7.46036 7.75199 8.21534 8.77547 8.96887 10.09121 10.48385 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.046687 B = 0.004721 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.592775 B = 5929.129657 C = 6233.060641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.114 3.886 4 C -0.207 4.207 5 C -0.055 4.055 6 C -0.100 4.100 7 C 0.088 3.912 8 H 0.076 0.924 9 C 0.015 3.985 10 N -0.597 5.597 11 C 0.374 3.626 12 C -0.451 4.451 13 H 0.084 0.916 14 C 0.077 3.923 15 N -0.733 5.733 16 Si 0.917 3.083 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.274 1.274 20 O -0.365 6.365 21 C -0.076 4.076 22 C -0.153 4.153 23 H 0.096 0.904 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.272 0.728 31 H 0.129 0.871 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -12.687 -2.185 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.069 3.931 4 C -0.226 4.226 5 C -0.073 4.073 6 C -0.100 4.100 7 C 0.029 3.971 8 H 0.093 0.907 9 C -0.116 4.116 10 N -0.343 5.343 11 C 0.173 3.827 12 C -0.489 4.489 13 H 0.102 0.898 14 C -0.147 4.147 15 N -0.358 5.358 16 Si 0.741 3.259 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.200 1.200 20 O -0.273 6.273 21 C -0.094 4.094 22 C -0.171 4.171 23 H 0.115 0.885 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.143 0.857 27 H 0.149 0.851 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.351 -12.458 -1.417 12.979 hybrid contribution -0.497 0.175 -0.674 0.856 sum -3.848 -12.284 -2.092 13.041 Atomic orbital electron populations 1.23011 0.78734 1.03506 1.01453 1.86023 1.21141 1.27246 1.89157 1.18996 0.92373 0.83909 0.97805 1.21214 0.99826 0.92233 1.09283 1.20880 0.94292 0.97203 0.94947 1.19752 0.93971 0.94129 1.02175 1.22518 0.92787 0.85867 0.95930 0.90652 1.23858 0.99724 0.94673 0.93317 1.76247 1.36782 1.06242 1.15038 1.22036 0.89293 0.84569 0.86770 1.18587 1.42446 0.86609 1.01242 0.89806 1.25745 0.93917 1.00540 0.94479 1.70027 1.28638 1.29186 1.07938 0.86131 0.78732 0.80966 0.80065 1.18507 1.19971 1.19955 1.86957 1.65714 1.19371 1.55290 1.20708 0.99779 0.90700 0.98250 1.20269 0.91230 0.98206 1.07419 0.88546 0.92716 0.92710 0.85663 0.85143 0.93594 0.92283 0.91705 0.85316 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.23 10.50 -19.43 -0.20 -4.44 16 3 C 0.11 1.68 6.69 -39.22 -0.26 1.42 16 4 C -0.21 -3.15 9.04 -39.43 -0.36 -3.50 16 5 C -0.06 -0.99 9.38 -39.61 -0.37 -1.36 16 6 C -0.10 -1.84 5.03 -104.60 -0.53 -2.37 16 7 C 0.09 1.91 3.94 -26.94 -0.11 1.81 16 8 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 9 C 0.02 0.36 7.67 -2.47 -0.02 0.34 16 10 N -0.60 -17.15 9.69 -59.50 -0.58 -17.72 16 11 C 0.37 10.62 7.43 -16.92 -0.13 10.49 16 12 C -0.45 -12.60 9.50 -37.70 -0.36 -12.96 16 13 H 0.08 2.22 7.85 -52.48 -0.41 1.81 16 14 C 0.08 2.04 5.50 -17.33 -0.10 1.95 16 15 N -0.73 -20.45 11.74 55.56 0.65 -19.80 16 16 Si 0.92 19.24 29.56 -169.99 -5.02 14.21 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 O -0.36 -9.37 10.00 -17.28 -0.17 -9.55 16 21 C -0.08 -1.18 9.70 -39.60 -0.38 -1.56 16 22 C -0.15 -2.20 9.99 -39.44 -0.39 -2.59 16 23 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 25 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 26 H 0.13 1.59 6.30 -52.49 -0.33 1.26 16 27 H 0.13 2.54 7.56 -52.49 -0.40 2.14 16 28 H 0.05 1.08 7.91 -51.93 -0.41 0.67 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.27 6.85 8.29 -40.82 -0.34 6.51 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 280.21 15.07 4.22 4.22 Total: -1.00 -31.74 280.21 -6.70 -38.44 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -3.59 Total: 1.73 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.01 Total: -7.09 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.08 Total: -37.53 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.38 Total: -13.99 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.74 -6.70 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260913610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.068 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds