Wall clock time and date at job start Mon Mar 30 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48506 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47023 * 299.99484 * 3 2 1 6 6 H 1.48493 * 109.47289 * 59.99900 * 3 2 1 7 7 C 1.37881 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99982 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.71461 * 300.53483 * 9 7 2 11 11 C 1.53396 * 109.68080 * 61.06936 * 9 7 2 12 12 C 1.53124 * 109.41220 * 169.26859 * 11 9 7 13 13 C 1.53332 * 109.52660 * 290.00533 * 12 11 9 14 14 C 1.50958 * 108.42878 * 50.05930 * 13 12 11 15 15 O 1.34193 * 127.68780 * 163.19534 * 14 13 12 16 16 C 1.34570 * 109.41721 * 179.88140 * 15 14 13 17 17 N 1.39251 * 125.83283 * 180.26657 * 16 15 14 18 18 C 1.35597 * 108.33919 * 0.40479 * 16 15 14 19 19 C 1.50705 * 126.70767 * 179.83072 * 18 16 15 20 20 C 1.52998 * 117.51784 * 227.67508 * 19 18 16 21 21 C 1.52994 * 59.99955 * 107.48022 * 20 19 18 22 22 C 1.34828 * 123.89472 * 343.29762 * 14 13 12 23 23 H 0.97005 * 119.99965 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47857 * 49.29057 * 11 9 7 25 25 H 1.08996 * 109.49291 * 289.26374 * 11 9 7 26 26 H 1.08997 * 109.46444 * 169.98855 * 12 11 9 27 27 H 1.09003 * 109.45202 * 50.01900 * 12 11 9 28 28 H 1.08999 * 109.67580 * 290.32671 * 13 12 11 29 29 H 1.09000 * 109.67487 * 169.79144 * 13 12 11 30 30 H 0.96994 * 120.00198 * 174.68776 * 17 16 15 31 31 H 0.97005 * 119.99563 * 354.67906 * 17 16 15 32 32 H 1.09000 * 115.54626 * 81.97049 * 19 18 16 33 33 H 1.09007 * 117.49368 * 214.97334 * 20 19 18 34 34 H 1.08998 * 117.49906 * 359.97438 * 20 19 18 35 35 H 1.08999 * 117.50097 * 252.50684 * 21 20 19 36 36 H 1.09004 * 117.51561 * 107.48455 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6160 -2.5563 0.8858 11 6 0.3871 -2.5980 -1.2620 12 6 -0.1635 -4.0209 -1.3921 13 6 0.9791 -4.9828 -1.7387 14 6 2.1111 -4.7487 -0.7679 15 8 3.1516 -5.5562 -0.5107 16 6 3.9423 -4.9855 0.4167 17 7 5.1183 -5.5265 0.9298 18 6 3.3966 -3.7950 0.7684 19 6 3.9413 -2.8176 1.7779 20 6 2.9666 -2.2550 2.8144 21 6 4.0233 -3.2785 3.2345 22 6 2.2257 -3.6479 0.0022 23 1 -0.4850 0.8401 -0.0004 24 1 0.9936 -2.3616 -2.1363 25 1 -0.4410 -1.8927 -1.1926 26 1 -0.9141 -4.0491 -2.1819 27 1 -0.6180 -4.3219 -0.4482 28 1 1.3227 -4.7932 -2.7556 29 1 0.6305 -6.0122 -1.6546 30 1 5.6647 -5.0078 1.5407 31 1 5.3910 -6.4223 0.6764 32 1 4.7272 -2.1555 1.4145 33 1 3.1112 -1.2226 3.1328 34 1 1.9310 -2.5915 2.7660 35 1 3.6830 -4.2885 3.4627 36 1 4.8634 -2.9198 3.8294 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260926271.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:45 Heat of formation + Delta-G solvation = 11.511307 kcal Electronic energy + Delta-G solvation = -18664.276703 eV Core-core repulsion = 15921.377340 eV Total energy + Delta-G solvation = -2742.899363 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.37263 -38.30291 -37.84767 -35.12086 -34.50526 -32.80136 -30.70107 -28.54527 -26.61211 -24.02558 -23.55238 -23.14365 -22.31884 -20.49112 -19.52580 -18.39785 -17.79572 -17.36382 -16.86719 -16.38073 -16.27388 -15.76520 -15.06662 -14.69021 -14.48255 -14.27299 -13.59406 -13.29953 -12.99693 -12.79829 -12.63396 -12.48113 -12.20737 -12.12906 -11.89945 -11.83650 -11.37817 -11.18449 -11.11726 -10.95146 -10.59242 -10.30860 -9.67612 -8.02512 -7.90690 -6.04127 1.18636 1.39939 1.43213 1.52990 1.71211 2.03388 2.51025 3.11188 3.30547 3.37233 4.00338 4.13306 4.27539 4.29742 4.34302 4.46591 4.59038 4.76290 4.86074 4.92047 4.95810 5.03742 5.07096 5.19191 5.29987 5.30639 5.40170 5.46781 5.52262 5.64710 5.75861 5.84170 6.04044 6.20148 6.32955 6.50352 6.56406 7.01425 7.17839 7.59468 9.08283 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.010751 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.582505 B = 2603.685268 C = 3653.951308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.482 4.482 8 H 0.049 0.951 9 C 0.113 3.887 10 H -0.001 1.001 11 C -0.102 4.102 12 C -0.109 4.109 13 C -0.010 4.010 14 C -0.104 4.104 15 O -0.201 6.201 16 C 0.264 3.736 17 N -0.820 5.820 18 C -0.233 4.233 19 C -0.062 4.062 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.110 4.110 23 H 0.256 0.744 24 H 0.028 0.972 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.428 0.572 31 H 0.410 0.590 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 -10.249 1.790 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.520 4.520 8 H 0.067 0.933 9 C 0.095 3.905 10 H 0.016 0.984 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.047 4.047 14 C -0.153 4.153 15 O -0.098 6.098 16 C 0.112 3.888 17 N -0.376 5.376 18 C -0.242 4.242 19 C -0.080 4.080 20 C -0.195 4.195 21 C -0.194 4.194 22 C -0.112 4.112 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.263 0.737 31 H 0.240 0.760 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.107 -10.373 1.595 12.674 hybrid contribution 0.441 1.290 0.133 1.369 sum 7.547 -9.083 1.728 11.935 Atomic orbital electron populations 1.70036 1.06814 1.26462 1.52923 1.25550 0.95460 1.01455 0.95873 0.85783 0.79275 0.81029 0.77281 1.19493 1.21196 1.20924 1.21219 0.92528 0.90548 1.47750 0.93269 1.17147 0.90587 0.89657 0.93108 0.98362 1.21519 0.99634 0.95209 0.97697 1.21604 0.96701 0.94872 1.01469 1.20034 0.89007 1.00642 0.95006 1.22211 0.93300 0.92060 1.07726 1.83618 1.32021 1.44839 1.49358 1.18545 0.88669 0.90838 0.90763 1.41072 1.21275 1.20730 1.54572 1.18632 0.99929 0.97435 1.08158 1.19756 1.01067 0.99209 0.87970 1.22477 0.95246 0.98058 1.03703 1.23092 1.01341 0.99021 0.95907 1.20510 0.97361 0.96364 0.96936 0.93461 0.95359 0.92256 0.89628 0.93024 0.90118 0.89031 0.73663 0.75986 0.89227 0.89809 0.91811 0.89216 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.47 11.55 21.45 0.25 -53.22 16 2 C 0.01 0.77 5.31 84.66 0.45 1.22 16 3 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.48 -26.61 6.86 25.60 0.18 -26.43 16 8 H 0.05 2.76 6.51 -2.91 -0.02 2.74 16 9 C 0.11 5.88 1.89 -12.17 -0.02 5.86 16 10 H 0.00 -0.08 7.77 -2.39 -0.02 -0.10 16 11 C -0.10 -4.93 4.85 30.77 0.15 -4.78 16 12 C -0.11 -4.08 5.89 30.75 0.18 -3.90 16 13 C -0.01 -0.34 6.30 30.04 0.19 -0.15 16 14 C -0.10 -4.29 7.23 24.98 0.18 -4.11 16 15 O -0.20 -7.65 10.66 -4.03 -0.04 -7.70 16 16 C 0.26 9.31 8.48 82.90 0.70 10.01 16 17 N -0.82 -19.31 9.11 -165.85 -1.51 -20.82 16 18 C -0.23 -9.61 5.39 -19.87 -0.11 -9.71 16 19 C -0.06 -2.33 4.22 -11.54 -0.05 -2.38 16 20 C -0.16 -6.16 8.84 30.59 0.27 -5.89 16 21 C -0.16 -4.63 10.23 30.59 0.31 -4.31 16 22 C -0.11 -5.10 5.38 -20.06 -0.11 -5.20 16 23 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 24 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 25 H 0.06 3.15 6.54 -2.39 -0.02 3.14 16 26 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.43 8.43 8.63 -92.71 -0.80 7.63 16 31 H 0.41 7.30 8.96 -92.70 -0.83 6.47 16 32 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 34 H 0.06 2.87 7.59 -2.39 -0.02 2.85 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -65.40 290.54 2.52 -62.88 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.53 Total: 22.07 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 2.32 Total: -49.78 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.26 Total: -74.04 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.04 Total: -7.70 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -65.40 2.52 -62.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926271.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.393 kcal (2) G-P(sol) polarization free energy of solvation -65.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds