Wall clock time and date at job start Mon Mar 30 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00274 * 2 1 4 4 H 1.48502 * 109.46740 * 270.00076 * 3 2 1 5 5 H 1.48502 * 109.47220 * 29.99756 * 3 2 1 6 6 H 1.48500 * 109.47129 * 150.00044 * 3 2 1 7 7 C 1.37877 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99851 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38469 * 119.75223 * 284.72323 * 12 9 7 14 14 O 1.35889 * 120.17096 * 0.03099 * 13 12 9 15 15 C 1.38716 * 119.65239 * 179.77495 * 13 12 9 16 16 C 1.37873 * 119.71675 * 0.65677 * 15 13 12 17 17 C 1.38912 * 120.62189 * 359.72783 * 16 15 13 18 18 C 1.37754 * 119.76937 * 359.72806 * 17 16 15 19 19 C 1.50643 * 122.55265 * 180.80471 * 18 17 16 20 20 C 1.52722 * 110.60235 * 342.00488 * 19 18 17 21 21 C 1.53317 * 108.40963 * 51.10845 * 20 19 18 22 22 C 1.50648 * 117.70538 * 179.41042 * 17 16 15 23 23 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 25 25 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 26 26 H 0.96701 * 114.00493 * 89.99766 * 14 13 12 27 27 H 1.08006 * 120.14459 * 180.39639 * 15 13 12 28 28 H 1.07999 * 119.69686 * 179.75585 * 16 15 13 29 29 H 1.09000 * 109.25313 * 102.28720 * 19 18 17 30 30 H 1.09002 * 109.25125 * 221.71067 * 19 18 17 31 31 H 1.09006 * 109.67306 * 291.38509 * 20 19 18 32 32 H 1.08995 * 109.71273 * 170.85764 * 20 19 18 33 33 H 1.09005 * 109.68020 * 170.44141 * 21 20 19 34 34 H 1.08997 * 109.68247 * 49.89304 * 21 20 19 35 35 H 1.08994 * 109.25350 * 282.49240 * 22 17 16 36 36 H 1.09003 * 109.25252 * 41.92307 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6805 -0.8888 11 7 4.0007 -0.5014 1.2006 12 6 4.0138 -2.6150 0.0023 13 6 3.9543 -3.3639 1.1654 14 8 3.4445 -2.8208 2.3020 15 6 4.4129 -4.6730 1.1630 16 6 4.9359 -5.2118 0.0066 17 6 5.0029 -4.4577 -1.1581 18 6 4.5378 -3.1611 -1.1611 19 6 4.5637 -2.2935 -2.3923 20 6 5.5350 -2.8579 -3.4270 21 6 5.2071 -4.3402 -3.6409 22 6 5.5990 -5.1073 -2.3796 23 1 -0.4850 0.8401 0.0004 24 1 3.6769 -0.9588 2.0397 25 1 5.0072 -0.4314 1.1924 26 1 2.4917 -2.9489 2.4062 27 1 4.3643 -5.2664 2.0641 28 1 5.2965 -6.2298 0.0061 29 1 3.5636 -2.2517 -2.8237 30 1 4.8777 -1.2869 -2.1162 31 1 6.5577 -2.7569 -3.0637 32 1 5.4246 -2.3182 -4.3676 33 1 5.7706 -4.7217 -4.4925 34 1 4.1391 -4.4572 -3.8248 35 1 6.6850 -5.1170 -2.2877 36 1 5.2360 -6.1323 -2.4550 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260946249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:18 Heat of formation + Delta-G solvation = -26.458038 kcal Electronic energy + Delta-G solvation = -18535.687853 eV Core-core repulsion = 15791.142016 eV Total energy + Delta-G solvation = -2744.545837 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03219 -37.43195 -34.81551 -34.62200 -32.03889 -31.04578 -29.29573 -27.86810 -26.10767 -23.36410 -22.66761 -22.26555 -19.61265 -19.21640 -17.36220 -16.89313 -15.81913 -15.25086 -14.85754 -14.51453 -14.05570 -13.86497 -13.64466 -13.54737 -13.17228 -12.54735 -12.34189 -12.22459 -11.96304 -11.79934 -11.51698 -10.98198 -10.71357 -10.69533 -10.46938 -10.39968 -10.12402 -9.98657 -9.51287 -9.15376 -8.48221 -8.02002 -7.78346 -6.98729 -5.99447 -4.08743 1.75183 1.88580 3.52641 3.63821 3.97797 4.07602 4.73808 4.81080 4.95005 4.95995 5.07663 5.34248 5.39329 5.43824 5.50265 5.63857 5.72757 5.78956 5.83115 6.02256 6.07258 6.18935 6.20489 6.26537 6.30898 6.51974 6.56325 6.63056 6.75474 6.85375 7.06200 7.29724 7.38306 7.67034 8.28216 8.38161 8.45109 8.89847 8.99412 9.66208 11.09996 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.009042 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.634491 B = 3095.895043 C = 3785.218370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.086 3.914 3 Si 0.863 3.137 4 H -0.298 1.298 5 H -0.305 1.305 6 H -0.190 1.190 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.218 3.782 10 H 0.047 0.953 11 N -0.836 5.836 12 C -0.094 4.094 13 C 0.106 3.894 14 O -0.495 6.495 15 C -0.153 4.153 16 C -0.128 4.128 17 C -0.094 4.094 18 C -0.061 4.061 19 C -0.082 4.082 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.073 4.073 23 H 0.262 0.738 24 H 0.345 0.655 25 H 0.301 0.699 26 H 0.394 0.606 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.225 -8.754 -3.204 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.118 4.118 3 Si 0.691 3.309 4 H -0.226 1.226 5 H -0.233 1.233 6 H -0.111 1.111 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.109 3.891 10 H 0.065 0.935 11 N -0.371 5.371 12 C -0.097 4.097 13 C 0.061 3.939 14 O -0.305 6.305 15 C -0.171 4.171 16 C -0.146 4.146 17 C -0.094 4.094 18 C -0.062 4.062 19 C -0.118 4.118 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.110 4.110 23 H 0.071 0.929 24 H 0.165 0.835 25 H 0.111 0.889 26 H 0.251 0.749 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.214 -7.866 -3.305 14.091 hybrid contribution 0.006 -0.350 0.200 0.403 sum 11.220 -8.216 -3.105 14.249 Atomic orbital electron populations 1.69959 1.06933 1.27307 1.49685 1.24953 0.94457 1.00072 0.92345 0.87254 0.84914 0.81026 0.77742 1.22579 1.23252 1.11127 1.20622 0.87290 0.94120 1.53321 0.91774 1.18610 0.96225 0.83388 0.90924 0.93538 1.60175 1.12193 1.57843 1.06916 1.21659 0.96031 1.00693 0.91306 1.18154 0.98940 0.90737 0.86035 1.84546 1.28559 1.78565 1.38859 1.21224 1.02710 0.94868 0.98344 1.20758 1.02132 0.99261 0.92438 1.19517 1.01041 0.93811 0.95046 1.19372 0.98416 0.93448 0.94941 1.20509 1.00475 0.98214 0.92624 1.21563 0.99395 0.95717 0.98920 1.21542 1.01763 0.95625 0.96764 1.20380 0.99822 0.98548 0.92279 0.92867 0.83467 0.88877 0.74914 0.86455 0.86846 0.89924 0.90362 0.92107 0.91750 0.92023 0.91523 0.91355 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.86 21.71 26.94 -169.99 -4.58 17.13 16 4 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 5 H -0.30 -7.93 7.11 56.52 0.40 -7.52 16 6 H -0.19 -4.48 5.17 56.52 0.29 -4.19 16 7 C -0.52 -14.01 9.12 -34.44 -0.31 -14.33 16 8 H 0.06 1.92 7.98 -52.48 -0.42 1.50 16 9 C 0.22 4.97 1.95 -70.01 -0.14 4.84 16 10 H 0.05 1.09 4.93 -51.93 -0.26 0.83 16 11 N -0.84 -18.15 5.70 -6.65 -0.04 -18.18 16 12 C -0.09 -1.93 4.90 -104.33 -0.51 -2.44 16 13 C 0.11 2.03 6.46 -39.32 -0.25 1.77 16 14 O -0.49 -9.15 10.17 -19.39 -0.20 -9.35 16 15 C -0.15 -2.55 9.99 -39.54 -0.40 -2.95 16 16 C -0.13 -1.97 9.60 -39.47 -0.38 -2.35 16 17 C -0.09 -1.51 5.74 -104.57 -0.60 -2.11 16 18 C -0.06 -1.12 5.74 -104.62 -0.60 -1.72 16 19 C -0.08 -1.37 4.84 -28.05 -0.14 -1.50 16 20 C -0.12 -1.55 5.98 -26.71 -0.16 -1.71 16 21 C -0.12 -1.44 5.98 -26.70 -0.16 -1.60 16 22 C -0.07 -0.92 5.67 -28.05 -0.16 -1.08 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 24 H 0.35 7.45 5.87 -39.29 -0.23 7.22 16 25 H 0.30 5.95 9.06 -39.29 -0.36 5.59 16 26 H 0.39 6.63 9.06 45.56 0.41 7.04 16 27 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.11 1.43 8.05 -52.49 -0.42 1.01 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.35 6.32 -51.93 -0.33 1.03 16 31 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 282.11 15.07 4.25 4.25 Total: -1.00 -30.85 282.11 -7.91 -38.76 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -4.22 Total: 16.97 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -3.90 Total: -22.82 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.74 Total: -44.95 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.20 Total: -9.35 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.58 Total: 17.13 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.85 -7.91 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.303 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds