Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48494 * 109.47202 * 240.00247 * 3 2 1 5 5 H 1.48506 * 109.46657 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46909 * 119.99767 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.38473 * 119.75080 * 74.99960 * 12 9 7 14 14 O 1.35904 * 120.17207 * 359.96014 * 13 12 9 15 15 C 1.38715 * 119.65420 * 179.97438 * 13 12 9 16 16 C 1.37875 * 119.71593 * 0.14086 * 15 13 12 17 17 C 1.38915 * 120.62089 * 0.02562 * 16 15 13 18 18 C 1.37762 * 119.76685 * 359.42789 * 17 16 15 19 19 C 1.50642 * 122.55264 * 181.00939 * 18 17 16 20 20 C 1.52729 * 110.58453 * 342.18331 * 19 18 17 21 21 C 1.53321 * 108.38763 * 51.20315 * 20 19 18 22 22 C 1.50651 * 117.70401 * 179.33803 * 17 16 15 23 23 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 25 25 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 26 26 H 0.96694 * 114.00433 * 90.00013 * 14 13 12 27 27 H 1.08001 * 120.14761 * 180.16307 * 15 13 12 28 28 H 1.08003 * 119.69094 * 179.97438 * 16 15 13 29 29 H 1.08997 * 109.25411 * 102.46908 * 19 18 17 30 30 H 1.09001 * 109.25091 * 221.93894 * 19 18 17 31 31 H 1.08992 * 109.68063 * 170.92625 * 20 19 18 32 32 H 1.08999 * 109.67710 * 291.48321 * 20 19 18 33 33 H 1.09006 * 109.67475 * 49.89255 * 21 20 19 34 34 H 1.08994 * 109.67781 * 170.43204 * 21 20 19 35 35 H 1.09000 * 109.25498 * 282.64794 * 22 17 16 36 36 H 1.08998 * 109.24911 * 42.06574 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 6 2.9136 -3.9656 1.1582 14 8 2.7029 -3.2506 2.2946 15 6 3.8142 -5.0206 1.1552 16 6 4.0230 -5.7375 -0.0038 17 6 3.3403 -5.4131 -1.1693 18 6 2.4370 -4.3729 -1.1658 19 6 1.6465 -3.9818 -2.3870 20 6 2.2855 -4.5595 -3.6481 21 6 2.5111 -6.0605 -3.4320 22 6 3.6301 -6.2301 -2.4014 23 1 -0.4850 0.8399 0.0004 24 1 -0.1577 -3.4145 1.1881 25 1 0.9639 -2.5269 2.0367 26 1 1.9932 -3.5979 2.8520 27 1 4.3493 -5.2796 2.0568 28 1 4.7246 -6.5586 -0.0059 29 1 0.6290 -4.3614 -2.2933 30 1 1.6188 -2.8949 -2.4642 31 1 1.6217 -4.4068 -4.4990 32 1 3.2404 -4.0678 -3.8339 33 1 1.5929 -6.5207 -3.0667 34 1 2.8069 -6.5263 -4.3719 35 1 4.5797 -5.9098 -2.8299 36 1 3.6974 -7.2828 -2.1268 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260946251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = -48.007841 kcal Electronic energy + Delta-G solvation = -18476.807725 eV Core-core repulsion = 15731.327418 eV Total energy + Delta-G solvation = -2745.480307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36088 -38.81239 -36.37077 -35.86906 -33.79897 -32.32275 -30.50018 -29.22339 -27.82777 -24.52622 -24.44355 -23.46377 -21.34136 -20.49621 -18.75852 -18.43229 -17.33710 -16.76031 -16.25476 -15.96415 -15.74928 -15.29577 -14.95693 -14.66752 -14.34740 -14.23342 -13.67403 -13.48515 -13.43745 -13.12294 -12.87026 -12.71206 -12.52967 -12.12120 -11.97700 -11.72144 -11.60601 -11.27706 -11.18228 -10.88235 -10.50175 -9.41556 -9.14922 -8.77886 -7.96431 -6.14401 0.42538 0.53954 1.38420 1.40316 1.47557 2.45311 2.76884 3.26290 3.41146 3.84536 3.87823 4.09264 4.17699 4.30785 4.36575 4.40829 4.57556 4.64058 4.68409 4.75309 4.98863 5.02220 5.08422 5.15934 5.19428 5.20498 5.35660 5.41096 5.49317 5.55314 5.72941 5.81672 5.91173 6.11238 6.22978 6.67052 6.90764 7.16452 7.32449 7.54855 9.06347 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.008452 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.807456 B = 3311.839594 C = 3915.701135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.036 3.964 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.525 4.525 8 H 0.028 0.972 9 C 0.266 3.734 10 H 0.023 0.977 11 N -0.825 5.825 12 C -0.134 4.134 13 C 0.078 3.922 14 O -0.498 6.498 15 C -0.155 4.155 16 C -0.122 4.122 17 C -0.093 4.093 18 C -0.079 4.079 19 C -0.078 4.078 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.073 4.073 23 H 0.254 0.746 24 H 0.305 0.695 25 H 0.329 0.671 26 H 0.388 0.612 27 H 0.140 0.860 28 H 0.153 0.847 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.794 -14.702 -3.640 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.167 4.167 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.564 4.564 8 H 0.046 0.954 9 C 0.156 3.844 10 H 0.041 0.959 11 N -0.360 5.360 12 C -0.137 4.137 13 C 0.034 3.966 14 O -0.309 6.309 15 C -0.173 4.173 16 C -0.140 4.140 17 C -0.093 4.093 18 C -0.080 4.080 19 C -0.115 4.115 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.110 4.110 23 H 0.063 0.937 24 H 0.116 0.884 25 H 0.148 0.852 26 H 0.246 0.754 27 H 0.158 0.842 28 H 0.171 0.829 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.750 -13.545 -4.079 15.270 hybrid contribution 0.336 0.384 0.866 1.005 sum 6.086 -13.161 -3.213 14.852 Atomic orbital electron populations 1.70194 1.06618 1.26163 1.48566 1.25572 0.95452 1.01291 0.94407 0.85941 0.78682 0.80447 0.78342 1.19979 1.20502 1.20602 1.20921 0.91167 0.91428 1.52840 0.95391 1.17792 0.87552 0.88868 0.90184 0.95930 1.59130 1.29042 1.42487 1.05299 1.21913 0.99535 0.98316 0.93946 1.18455 0.98311 0.93211 0.86637 1.84907 1.58443 1.54804 1.32710 1.21504 0.99956 0.95396 1.00435 1.21229 1.00524 1.00764 0.91441 1.20003 0.96213 0.96177 0.96953 1.19644 0.98264 0.95544 0.94558 1.20412 0.98067 1.00209 0.92814 1.21556 1.00775 0.96866 0.96029 1.21602 0.98668 0.95144 0.99604 1.20567 0.99357 0.99289 0.91785 0.93653 0.88418 0.85200 0.75448 0.84182 0.82900 0.91563 0.93094 0.90406 0.92262 0.91861 0.89009 0.89861 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.05 12.77 21.45 0.27 -52.78 16 2 C 0.04 2.09 5.39 84.65 0.46 2.55 16 3 Si 0.94 46.34 29.54 68.60 2.03 48.37 16 4 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.52 -30.73 8.52 25.60 0.22 -30.51 16 8 H 0.03 1.71 7.74 -2.91 -0.02 1.69 16 9 C 0.27 13.74 2.24 43.42 0.10 13.84 16 10 H 0.02 1.29 5.94 -2.39 -0.01 1.27 16 11 N -0.83 -40.03 8.41 -174.95 -1.47 -41.50 16 12 C -0.13 -5.91 4.90 -19.68 -0.10 -6.01 16 13 C 0.08 3.14 6.46 22.44 0.15 3.28 16 14 O -0.50 -19.88 11.11 -92.47 -1.03 -20.91 16 15 C -0.15 -5.01 9.99 22.30 0.22 -4.79 16 16 C -0.12 -3.45 9.60 22.35 0.21 -3.24 16 17 C -0.09 -2.86 5.74 -19.83 -0.11 -2.97 16 18 C -0.08 -3.03 5.74 -19.87 -0.11 -3.14 16 19 C -0.08 -2.83 4.46 29.74 0.13 -2.70 16 20 C -0.11 -3.08 5.97 30.61 0.18 -2.90 16 21 C -0.11 -2.36 6.00 30.73 0.18 -2.18 16 22 C -0.07 -1.59 5.67 29.86 0.17 -1.42 16 23 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 24 H 0.31 13.10 9.06 -89.69 -0.81 12.29 16 25 H 0.33 15.06 5.18 -89.70 -0.46 14.60 16 26 H 0.39 12.05 7.79 -74.06 -0.58 11.47 16 27 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.15 3.11 8.05 -2.91 -0.02 3.09 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.05 2.23 6.88 -2.39 -0.02 2.21 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 33 H 0.06 1.35 8.10 -2.38 -0.02 1.34 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 Total: -1.00 -69.96 287.72 0.76 -69.20 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.74 Total: 37.81 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 1.70 Total: -40.19 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -1.20 Total: -94.28 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -1.03 Total: -20.91 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -69.96 0.76 -69.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.188 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds