Wall clock time and date at job start Mon Mar 30 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99604 * 2 1 4 4 H 1.48497 * 109.47193 * 269.99834 * 3 2 1 5 5 H 1.48499 * 109.47154 * 29.99920 * 3 2 1 6 6 H 1.48497 * 109.46829 * 150.00008 * 3 2 1 7 7 C 1.37880 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99715 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99885 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46739 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47157 * 304.99438 * 10 9 7 12 12 N 1.46891 * 109.47461 * 64.99832 * 10 9 7 13 13 C 1.50707 * 109.46596 * 185.00075 * 10 9 7 14 14 C 1.38411 * 119.91521 * 104.99825 * 13 10 9 15 15 C 1.38256 * 119.90421 * 179.97438 * 14 13 10 16 16 C 1.38546 * 119.93746 * 0.02562 * 15 14 13 17 17 C 1.37998 * 120.29342 * 359.97438 * 16 15 14 18 18 C 1.38592 * 119.91101 * 284.99473 * 13 10 9 19 19 O 1.35902 * 120.09581 * 359.97438 * 18 13 10 20 20 C 1.51399 * 109.73833 * 179.97438 * 15 14 13 21 21 C 1.54339 * 105.17432 * 342.80213 * 20 15 14 22 22 C 1.51688 * 130.25777 * 359.79646 * 14 13 10 23 23 H 0.96996 * 120.00035 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47051 * 59.99691 * 9 7 2 25 25 H 1.09000 * 109.46758 * 299.99826 * 9 7 2 26 26 H 1.00901 * 111.00109 * 59.99794 * 12 10 9 27 27 H 1.00900 * 111.00108 * 183.95295 * 12 10 9 28 28 H 1.08004 * 119.85180 * 180.02562 * 16 15 14 29 29 H 1.07995 * 120.06228 * 179.97438 * 17 16 15 30 30 H 0.96698 * 114.00465 * 270.02778 * 19 18 13 31 31 H 1.08998 * 110.30353 * 223.87560 * 20 15 14 32 32 H 1.09001 * 110.37814 * 101.76849 * 20 15 14 33 33 H 1.09002 * 110.82153 * 144.59737 * 21 20 15 34 34 H 1.09005 * 110.82082 * 267.94927 * 21 20 15 35 35 H 1.09003 * 110.25486 * 78.30217 * 22 14 13 36 36 H 1.08997 * 110.49771 * 316.05397 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 1 3.5868 -3.1756 0.8425 12 7 3.6335 -3.2930 -1.2544 13 6 5.5235 -2.6381 0.1254 14 6 6.1162 -2.9832 1.3277 15 6 7.4940 -2.9852 1.4415 16 6 8.2782 -2.6414 0.3523 17 6 7.6903 -2.2969 -0.8477 18 6 6.3077 -2.2943 -0.9643 19 8 5.7241 -1.9563 -2.1443 20 6 7.8907 -3.3939 2.8442 21 6 6.6139 -3.2167 3.6930 22 6 5.4900 -3.3881 2.6486 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 4.0246 -2.8115 -2.0502 27 1 3.9025 -4.2654 -1.2521 28 1 9.3545 -2.6438 0.4426 29 1 8.3052 -2.0292 -1.6942 30 1 5.5751 -2.7048 -2.7380 31 1 8.6850 -2.7470 3.2164 32 1 8.2134 -4.4350 2.8593 33 1 6.5492 -3.9872 4.4612 34 1 6.5803 -2.2229 4.1395 35 1 5.1649 -4.4278 2.6091 36 1 4.6493 -2.7370 2.8881 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260962175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:06 Heat of formation + Delta-G solvation = -22.466631 kcal Electronic energy + Delta-G solvation = -18172.167012 eV Core-core repulsion = 15427.794255 eV Total energy + Delta-G solvation = -2744.372757 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44985 -37.90546 -35.30914 -34.47094 -32.30873 -30.48744 -28.75244 -28.35589 -26.95096 -24.23022 -22.18524 -21.19576 -20.82534 -19.35793 -17.68026 -16.76857 -16.30703 -15.61126 -15.25196 -14.80806 -14.64210 -14.03532 -13.69481 -13.37975 -13.06998 -12.81074 -12.30024 -12.24926 -11.96057 -11.61986 -11.48471 -11.33607 -11.14818 -11.01630 -10.73208 -10.44327 -10.06217 -9.96344 -9.65801 -9.02933 -8.40296 -8.35398 -8.18329 -7.87323 -5.87388 -3.81405 1.35382 1.48892 3.41287 3.47521 3.53172 3.68834 4.23201 4.54192 4.59241 4.63802 5.01163 5.07447 5.15725 5.29095 5.35636 5.43473 5.54887 5.61622 5.69733 5.77791 5.84901 5.90573 6.10147 6.16365 6.24388 6.26234 6.43378 6.58713 6.70131 6.80733 6.94844 7.22997 7.47532 7.78183 7.87067 8.01304 8.18778 8.75204 9.24578 9.75889 11.26426 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.007518 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.263954 B = 3723.529955 C = 4126.677345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.063 3.937 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.001 3.999 10 C 0.150 3.850 11 H 0.080 0.920 12 N -0.822 5.822 13 C -0.116 4.116 14 C -0.075 4.075 15 C -0.110 4.110 16 C -0.105 4.105 17 C -0.146 4.146 18 C 0.102 3.898 19 O -0.485 6.485 20 C -0.078 4.078 21 C -0.120 4.120 22 C -0.085 4.085 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.020 0.980 26 H 0.338 0.662 27 H 0.319 0.681 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.380 0.620 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.678 -8.506 2.672 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.137 4.137 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.529 4.529 8 H 0.097 0.903 9 C -0.036 4.036 10 C 0.038 3.962 11 H 0.099 0.901 12 N -0.356 5.356 13 C -0.119 4.119 14 C -0.076 4.076 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.165 4.165 18 C 0.057 3.943 19 O -0.294 6.294 20 C -0.115 4.115 21 C -0.158 4.158 22 C -0.122 4.122 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.038 0.962 26 H 0.157 0.843 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.237 0.763 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.779 -7.609 3.076 18.679 hybrid contribution 1.518 0.461 -0.529 1.673 sum 18.298 -7.148 2.547 19.809 Atomic orbital electron populations 1.69912 1.06092 1.26373 1.52475 1.24978 0.94657 0.98681 0.95364 0.86897 0.80282 0.84359 0.78421 1.20476 1.21626 1.19365 1.21046 0.88842 0.94482 1.48573 0.90256 1.19591 0.97615 0.89918 0.96486 1.20421 0.84228 0.98946 0.92592 0.90142 1.58883 1.67650 1.04589 1.04504 1.21303 1.00005 0.98030 0.92559 1.20397 0.93900 0.98726 0.94557 1.20610 0.94140 1.00668 0.95593 1.20330 0.99141 1.00994 0.91906 1.21229 0.94040 1.02735 0.98483 1.18169 0.90067 0.99645 0.86390 1.84971 1.81171 1.36593 1.26712 1.21003 0.98324 1.01182 0.90976 1.22300 0.93876 1.02363 0.97230 1.21133 0.98610 1.01959 0.90483 0.93070 0.96798 0.96178 0.84290 0.87034 0.86353 0.85679 0.76295 0.91044 0.90559 0.90669 0.90916 0.90205 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.99 13.96 55.43 0.77 -28.22 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.87 23.00 27.47 -169.99 -4.67 18.33 16 4 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.94 6.54 56.52 0.37 -6.57 16 7 C -0.49 -14.47 9.39 -34.44 -0.32 -14.79 16 8 H 0.08 2.53 7.99 -52.49 -0.42 2.11 16 9 C 0.00 0.04 3.58 -27.88 -0.10 -0.06 16 10 C 0.15 3.05 2.76 -68.87 -0.19 2.86 16 11 H 0.08 1.67 7.23 -51.93 -0.38 1.30 16 12 N -0.82 -15.28 8.82 -5.66 -0.05 -15.33 16 13 C -0.12 -2.04 4.95 -104.42 -0.52 -2.56 16 14 C -0.07 -1.18 6.01 -104.06 -0.63 -1.81 16 15 C -0.11 -1.51 6.14 -104.16 -0.64 -2.15 16 16 C -0.11 -1.38 10.03 -39.56 -0.40 -1.78 16 17 C -0.15 -2.06 9.99 -39.48 -0.39 -2.45 16 18 C 0.10 1.66 6.48 -39.26 -0.25 1.41 16 19 O -0.48 -7.67 10.60 -19.43 -0.21 -7.88 16 20 C -0.08 -0.83 6.77 -26.84 -0.18 -1.01 16 21 C -0.12 -1.30 7.07 -25.31 -0.18 -1.48 16 22 C -0.08 -1.16 5.92 -26.68 -0.16 -1.31 16 23 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 24 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 25 H 0.02 0.53 6.97 -51.93 -0.36 0.16 16 26 H 0.34 5.86 5.21 -39.29 -0.20 5.65 16 27 H 0.32 4.89 9.06 -39.29 -0.36 4.54 16 28 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.38 4.22 7.80 45.56 0.36 4.58 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 LS Contribution 290.83 15.07 4.38 4.38 Total: -1.00 -34.32 290.83 -8.11 -42.42 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.28 Total: 9.62 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -4.06 Total: -23.33 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.72 Total: -43.54 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.21 Total: -7.88 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.67 Total: 18.33 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.32 -8.11 -42.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.956 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds