Wall clock time and date at job start Mon Mar 30 2020 06:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99604 * 2 1 4 4 H 1.48497 * 109.47193 * 269.99834 * 3 2 1 5 5 H 1.48499 * 109.47154 * 29.99920 * 3 2 1 6 6 H 1.48497 * 109.46829 * 150.00008 * 3 2 1 7 7 C 1.37880 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99715 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99885 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46739 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47157 * 304.99438 * 10 9 7 12 12 N 1.46891 * 109.47461 * 64.99832 * 10 9 7 13 13 C 1.50707 * 109.46596 * 185.00075 * 10 9 7 14 14 C 1.38411 * 119.91521 * 104.99825 * 13 10 9 15 15 C 1.38256 * 119.90421 * 179.97438 * 14 13 10 16 16 C 1.38546 * 119.93746 * 0.02562 * 15 14 13 17 17 C 1.37998 * 120.29342 * 359.97438 * 16 15 14 18 18 C 1.38592 * 119.91101 * 284.99473 * 13 10 9 19 19 O 1.35902 * 120.09581 * 359.97438 * 18 13 10 20 20 C 1.51399 * 109.73833 * 179.97438 * 15 14 13 21 21 C 1.54339 * 105.17432 * 342.80213 * 20 15 14 22 22 C 1.51688 * 130.25777 * 359.79646 * 14 13 10 23 23 H 0.96996 * 120.00035 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47051 * 59.99691 * 9 7 2 25 25 H 1.09000 * 109.46758 * 299.99826 * 9 7 2 26 26 H 1.00901 * 111.00109 * 59.99794 * 12 10 9 27 27 H 1.00900 * 111.00108 * 183.95295 * 12 10 9 28 28 H 1.08004 * 119.85180 * 180.02562 * 16 15 14 29 29 H 1.07995 * 120.06228 * 179.97438 * 17 16 15 30 30 H 0.96698 * 114.00465 * 270.02778 * 19 18 13 31 31 H 1.08998 * 110.30353 * 223.87560 * 20 15 14 32 32 H 1.09001 * 110.37814 * 101.76849 * 20 15 14 33 33 H 1.09002 * 110.82153 * 144.59737 * 21 20 15 34 34 H 1.09005 * 110.82082 * 267.94927 * 21 20 15 35 35 H 1.09003 * 110.25486 * 78.30217 * 22 14 13 36 36 H 1.08997 * 110.49771 * 316.05397 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 1 3.5868 -3.1756 0.8425 12 7 3.6335 -3.2930 -1.2544 13 6 5.5235 -2.6381 0.1254 14 6 6.1162 -2.9832 1.3277 15 6 7.4940 -2.9852 1.4415 16 6 8.2782 -2.6414 0.3523 17 6 7.6903 -2.2969 -0.8477 18 6 6.3077 -2.2943 -0.9643 19 8 5.7241 -1.9563 -2.1443 20 6 7.8907 -3.3939 2.8442 21 6 6.6139 -3.2167 3.6930 22 6 5.4900 -3.3881 2.6486 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 4.0246 -2.8115 -2.0502 27 1 3.9025 -4.2654 -1.2521 28 1 9.3545 -2.6438 0.4426 29 1 8.3052 -2.0292 -1.6942 30 1 5.5751 -2.7048 -2.7380 31 1 8.6850 -2.7470 3.2164 32 1 8.2134 -4.4350 2.8593 33 1 6.5492 -3.9872 4.4612 34 1 6.5803 -2.2229 4.1395 35 1 5.1649 -4.4278 2.6091 36 1 4.6493 -2.7370 2.8881 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260962175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:05 Heat of formation + Delta-G solvation = -47.288459 kcal Electronic energy + Delta-G solvation = -18173.243367 eV Core-core repulsion = 15427.794255 eV Total energy + Delta-G solvation = -2745.449112 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58844 -39.01562 -36.90383 -35.49466 -34.52342 -31.69019 -30.77650 -29.38183 -27.99729 -25.98749 -23.51115 -22.49375 -22.06113 -20.70180 -18.99226 -18.74824 -17.69871 -16.63397 -16.55846 -16.20250 -16.09241 -15.70019 -15.09361 -14.77374 -14.55264 -14.27864 -13.72159 -13.53215 -13.33040 -13.07017 -12.94940 -12.69241 -12.36459 -12.21143 -12.04674 -11.90057 -11.82252 -11.59022 -11.44658 -11.17408 -10.73193 -9.64590 -9.32356 -9.24628 -8.23673 -6.22662 0.25544 0.35534 1.31017 1.31354 1.43653 2.35994 2.59751 3.09727 3.14725 3.58731 3.64258 3.87439 3.99084 4.16421 4.18059 4.27279 4.35913 4.55217 4.66548 4.76634 4.84110 4.88147 4.94227 5.04850 5.11999 5.17887 5.22097 5.30970 5.36225 5.39810 5.60285 5.67115 5.68804 5.92354 6.33393 6.50141 6.73959 6.81207 6.86188 7.38255 8.93485 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.007518 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.263954 B = 3723.529955 C = 4126.677345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.494 4.494 8 H 0.040 0.960 9 C 0.012 3.988 10 C 0.161 3.839 11 H 0.064 0.936 12 N -0.836 5.836 13 C -0.144 4.144 14 C -0.095 4.095 15 C -0.112 4.112 16 C -0.098 4.098 17 C -0.148 4.148 18 C 0.089 3.911 19 O -0.502 6.502 20 C -0.073 4.073 21 C -0.115 4.115 22 C -0.091 4.091 23 H 0.263 0.737 24 H 0.004 0.996 25 H 0.012 0.988 26 H 0.345 0.655 27 H 0.338 0.662 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.397 0.603 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.112 -8.470 3.149 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.192 4.192 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.533 4.533 8 H 0.058 0.942 9 C -0.026 4.026 10 C 0.049 3.951 11 H 0.082 0.918 12 N -0.373 5.373 13 C -0.146 4.146 14 C -0.096 4.096 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.166 4.166 18 C 0.044 3.956 19 O -0.314 6.314 20 C -0.109 4.109 21 C -0.152 4.152 22 C -0.128 4.128 23 H 0.072 0.928 24 H 0.022 0.978 25 H 0.030 0.970 26 H 0.165 0.835 27 H 0.150 0.850 28 H 0.172 0.828 29 H 0.166 0.834 30 H 0.256 0.744 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.227 -7.600 3.546 21.897 hybrid contribution 0.426 0.348 -0.696 0.886 sum 20.653 -7.252 2.850 22.074 Atomic orbital electron populations 1.70056 1.07837 1.27590 1.53912 1.25851 0.95519 1.02678 0.95150 0.85806 0.79142 0.79677 0.78823 1.19715 1.20541 1.18500 1.21268 0.91174 0.93023 1.47820 0.94156 1.19407 0.94564 0.93341 0.95302 1.19960 0.86730 0.95663 0.92731 0.91799 1.58768 1.68389 1.05913 1.04219 1.21034 0.97896 1.01348 0.94360 1.20706 0.95470 0.98942 0.94486 1.21049 0.93133 0.99663 0.97368 1.20774 1.00922 0.98913 0.90990 1.21504 0.93083 1.02164 0.99857 1.18362 0.91100 1.00057 0.86066 1.84900 1.81404 1.38034 1.27035 1.21078 0.98391 1.02800 0.88672 1.22326 0.92785 1.03120 0.96995 1.21218 0.98900 1.01737 0.90902 0.92780 0.97777 0.96996 0.83538 0.84967 0.82835 0.83399 0.74352 0.89100 0.88437 0.88173 0.91274 0.89432 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.46 13.96 21.45 0.30 -62.16 16 2 C 0.00 0.23 5.47 84.65 0.46 0.69 16 3 Si 0.94 48.13 27.47 68.60 1.88 50.02 16 4 H -0.27 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.26 -12.88 6.54 99.48 0.65 -12.23 16 7 C -0.49 -30.25 9.39 25.60 0.24 -30.01 16 8 H 0.04 2.71 7.99 -2.91 -0.02 2.69 16 9 C 0.01 0.60 3.58 29.85 0.11 0.70 16 10 C 0.16 6.75 2.76 44.17 0.12 6.87 16 11 H 0.06 2.81 7.23 -2.39 -0.02 2.80 16 12 N -0.84 -31.82 8.82 -171.82 -1.52 -33.33 16 13 C -0.14 -5.03 4.95 -19.74 -0.10 -5.12 16 14 C -0.10 -2.91 6.01 -19.50 -0.12 -3.03 16 15 C -0.11 -2.74 6.14 -19.56 -0.12 -2.86 16 16 C -0.10 -2.19 10.03 22.29 0.22 -1.96 16 17 C -0.15 -3.73 9.99 22.34 0.22 -3.51 16 18 C 0.09 2.79 6.48 22.48 0.15 2.93 16 19 O -0.50 -15.48 10.60 -92.44 -0.98 -16.46 16 20 C -0.07 -1.26 6.77 30.52 0.21 -1.05 16 21 C -0.11 -2.20 7.07 31.51 0.22 -1.98 16 22 C -0.09 -2.43 5.92 30.63 0.18 -2.25 16 23 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 24 H 0.00 0.21 7.20 -2.39 -0.02 0.19 16 25 H 0.01 0.62 6.97 -2.39 -0.02 0.61 16 26 H 0.34 12.09 5.21 -89.69 -0.47 11.63 16 27 H 0.34 10.50 9.06 -89.69 -0.81 9.69 16 28 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.40 8.55 7.80 -74.06 -0.58 7.97 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 Total: -1.00 -75.87 290.83 0.69 -75.18 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.80 Total: 27.34 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 1.80 Total: -40.58 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -1.22 Total: -95.49 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.98 Total: -16.46 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.88 Total: 50.02 kcal Total: -75.87 0.69 -75.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.891 kcal (2) G-P(sol) polarization free energy of solvation -75.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds