Wall clock time and date at job start Mon Mar 30 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48500 * 109.47410 * 269.99739 * 3 2 1 5 5 H 1.48500 * 109.47405 * 30.00280 * 3 2 1 6 6 H 1.48508 * 109.46945 * 149.99959 * 3 2 1 7 7 C 1.37880 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46912 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.46944 * 55.00094 * 10 9 7 12 12 N 1.46904 * 109.46920 * 294.99929 * 10 9 7 13 13 C 1.50700 * 109.47128 * 174.99902 * 10 9 7 14 14 C 1.38408 * 119.91652 * 254.72370 * 13 10 9 15 15 C 1.38257 * 119.91155 * 180.30325 * 14 13 10 16 16 C 1.38545 * 119.93573 * 359.95280 * 15 14 13 17 17 C 1.38013 * 120.29001 * 0.04001 * 16 15 14 18 18 C 1.38605 * 119.91349 * 74.99810 * 13 10 9 19 19 O 1.35904 * 120.08977 * 359.74353 * 18 13 10 20 20 C 1.51386 * 109.73899 * 179.97438 * 15 14 13 21 21 C 1.54292 * 105.19609 * 342.87290 * 20 15 14 22 22 C 1.51379 * 130.33351 * 0.33746 * 14 13 10 23 23 H 0.97004 * 119.99484 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47178 * 59.99852 * 9 7 2 25 25 H 1.08997 * 109.47507 * 299.99822 * 9 7 2 26 26 H 1.00899 * 110.99881 * 299.99833 * 12 10 9 27 27 H 1.00896 * 111.00094 * 63.95365 * 12 10 9 28 28 H 1.07995 * 119.85980 * 180.02562 * 16 15 14 29 29 H 1.07999 * 120.06011 * 180.02562 * 17 16 15 30 30 H 0.96698 * 114.00042 * 90.00247 * 19 18 13 31 31 H 1.09007 * 110.30320 * 101.71838 * 20 15 14 32 32 H 1.09005 * 110.30201 * 223.86322 * 20 15 14 33 33 H 1.09001 * 110.76716 * 268.08777 * 21 20 15 34 34 H 1.08995 * 111.02890 * 144.63511 * 21 20 15 35 35 H 1.09003 * 110.30383 * 316.08506 * 22 14 13 36 36 H 1.09008 * 110.30453 * 78.23261 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 1 2.9293 -3.5560 0.8391 12 7 3.0083 -3.6528 -1.2580 13 6 1.4958 -4.9638 0.1200 14 6 1.5027 -5.6538 1.3197 15 6 0.8203 -6.8511 1.4304 16 6 0.1305 -7.3570 0.3405 17 6 0.1217 -6.6713 -0.8571 18 6 0.8062 -5.4698 -0.9707 19 8 0.8009 -4.7911 -2.1481 20 6 0.9811 -7.4039 2.8305 21 6 2.1841 -6.6453 3.4290 22 6 2.1673 -5.3200 2.6382 23 1 -0.4849 0.8401 0.0004 24 1 0.6247 -2.5562 -0.8919 25 1 0.6240 -2.5575 0.8880 26 1 2.3960 -3.7499 -2.0541 27 1 3.5700 -2.8180 -1.3335 28 1 -0.4025 -8.2922 0.4284 29 1 -0.4176 -7.0688 -1.7042 30 1 1.5234 -5.0317 -2.7440 31 1 0.0838 -7.2113 3.4186 32 1 1.1876 -8.4735 2.7934 33 1 3.1114 -7.1903 3.2523 34 1 2.0408 -6.4629 4.4940 35 1 3.1848 -4.9670 2.4702 36 1 1.5886 -4.5671 3.1736 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260962176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:09 Heat of formation + Delta-G solvation = -32.154146 kcal Electronic energy + Delta-G solvation = -18087.354464 eV Core-core repulsion = 15342.561625 eV Total energy + Delta-G solvation = -2744.792839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19965 -37.65313 -35.22901 -34.26769 -32.43171 -30.43344 -28.16577 -27.86385 -26.80515 -24.32802 -22.23444 -21.16665 -20.74537 -19.22016 -17.42779 -16.83203 -15.95502 -15.60272 -14.79100 -14.56906 -14.49475 -14.08495 -13.36552 -13.29600 -12.75172 -12.63476 -12.29623 -12.00784 -11.80349 -11.54010 -11.35525 -11.14284 -11.05832 -10.93333 -10.71712 -10.55453 -10.37164 -9.85691 -9.69054 -9.03609 -8.42468 -8.27593 -7.96473 -7.60343 -6.01866 -4.06234 1.60914 1.74263 3.29291 3.35983 3.38637 3.92635 4.42761 4.52185 4.72328 4.80645 5.12285 5.27812 5.31116 5.34928 5.52694 5.59749 5.67726 5.82683 5.88701 5.95984 6.01145 6.08510 6.27753 6.31928 6.41508 6.48156 6.67652 6.84507 6.85981 7.07314 7.18080 7.54019 7.74379 7.94647 8.07728 8.11919 8.28828 8.39974 9.01069 9.57891 11.08757 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.006682 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.000594 B = 4189.148316 C = 4742.131499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.004 3.996 10 C 0.131 3.869 11 H 0.073 0.927 12 N -0.846 5.846 13 C -0.060 4.060 14 C -0.079 4.079 15 C -0.112 4.112 16 C -0.109 4.109 17 C -0.149 4.149 18 C 0.113 3.887 19 O -0.486 6.486 20 C -0.077 4.077 21 C -0.119 4.119 22 C -0.082 4.082 23 H 0.260 0.740 24 H 0.027 0.973 25 H 0.014 0.986 26 H 0.332 0.668 27 H 0.344 0.656 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.383 0.617 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 -14.439 2.262 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.035 4.035 10 C 0.020 3.980 11 H 0.091 0.909 12 N -0.382 5.382 13 C -0.061 4.061 14 C -0.080 4.080 15 C -0.113 4.113 16 C -0.127 4.127 17 C -0.167 4.167 18 C 0.069 3.931 19 O -0.296 6.296 20 C -0.114 4.114 21 C -0.157 4.157 22 C -0.119 4.119 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.240 0.760 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.608 -14.713 2.760 15.195 hybrid contribution 0.073 1.719 -0.530 1.800 sum 2.681 -12.994 2.230 13.454 Atomic orbital electron populations 1.69992 1.06083 1.26577 1.50209 1.25017 0.94802 0.99204 0.95212 0.86606 0.79825 0.83534 0.78089 1.20671 1.21250 1.19863 1.21160 0.92773 0.90928 1.51363 0.92675 1.19750 0.94405 0.91240 0.98075 1.20422 0.94476 0.90435 0.92708 0.90898 1.59484 1.28306 1.45673 1.04692 1.20050 0.96943 0.96891 0.92179 1.20212 0.98777 0.94594 0.94383 1.20512 0.99008 0.96420 0.95312 1.20272 1.00467 0.99954 0.91987 1.21191 1.02127 0.94920 0.98471 1.18072 0.97702 0.90966 0.86396 1.84907 1.53418 1.64348 1.26943 1.20971 0.98756 0.99497 0.92146 1.22273 0.98110 0.95944 0.99350 1.21037 1.00977 0.97726 0.92162 0.92990 0.95447 0.96768 0.85145 0.84251 0.86550 0.85845 0.75996 0.90567 0.91216 0.91225 0.90786 0.90524 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.61 8.55 -34.44 -0.29 -14.91 16 8 H 0.06 1.47 7.14 -52.49 -0.38 1.10 16 9 C 0.00 0.10 4.51 -27.88 -0.13 -0.03 16 10 C 0.13 2.80 2.82 -68.86 -0.19 2.61 16 11 H 0.07 1.58 6.90 -51.93 -0.36 1.22 16 12 N -0.85 -16.25 9.07 -5.65 -0.05 -16.30 16 13 C -0.06 -1.17 4.96 -104.42 -0.52 -1.68 16 14 C -0.08 -1.38 6.01 -104.22 -0.63 -2.01 16 15 C -0.11 -1.72 6.14 -104.16 -0.64 -2.36 16 16 C -0.11 -1.59 10.03 -39.55 -0.40 -1.99 16 17 C -0.15 -2.35 9.99 -39.48 -0.39 -2.74 16 18 C 0.11 2.08 6.48 -39.26 -0.25 1.82 16 19 O -0.49 -8.61 10.60 -19.44 -0.21 -8.81 16 20 C -0.08 -0.91 6.77 -26.87 -0.18 -1.09 16 21 C -0.12 -1.38 7.08 -25.35 -0.18 -1.56 16 22 C -0.08 -1.23 6.11 -26.85 -0.16 -1.39 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.03 0.79 7.53 -51.93 -0.39 0.40 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.33 6.05 5.21 -39.29 -0.20 5.85 16 27 H 0.34 6.76 7.90 -39.29 -0.31 6.45 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.38 5.09 7.79 45.56 0.35 5.44 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.14 7.57 -51.93 -0.39 0.74 16 36 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 292.04 15.07 4.40 4.40 Total: -1.00 -32.01 292.04 -8.40 -40.41 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -4.20 Total: 13.79 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -4.07 Total: -23.72 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.69 Total: -42.66 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.21 Total: -8.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.01 -8.40 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.253 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds