Wall clock time and date at job start Mon Mar 30 2020 06:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47352 * 299.99916 * 3 2 1 6 6 H 1.48503 * 109.47122 * 60.00402 * 3 2 1 7 7 C 1.37883 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99694 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99855 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46610 * 299.99609 * 9 7 2 11 11 N 1.46893 * 109.47472 * 59.99595 * 9 7 2 12 12 C 1.50704 * 109.46974 * 180.02562 * 9 7 2 13 13 C 1.37877 * 120.14226 * 264.99851 * 12 9 7 14 14 C 1.38905 * 120.62376 * 179.97438 * 13 12 9 15 15 C 1.37755 * 119.77148 * 359.82446 * 14 13 12 16 16 C 1.38791 * 119.73538 * 0.34162 * 15 14 13 17 17 C 1.38471 * 120.50072 * 359.71686 * 16 15 14 18 18 O 1.35904 * 120.17026 * 180.02562 * 17 16 15 19 19 C 1.50646 * 122.56075 * 180.67998 * 15 14 13 20 20 C 1.52726 * 110.58671 * 342.21570 * 19 15 14 21 21 C 1.53326 * 108.38175 * 51.12585 * 20 19 15 22 22 C 1.50660 * 117.70070 * 179.78298 * 14 13 12 23 23 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.00899 * 110.99577 * 60.00166 * 11 9 7 25 25 H 1.00902 * 111.00047 * 183.95057 * 11 9 7 26 26 H 1.08001 * 119.68520 * 359.97438 * 13 12 9 27 27 H 1.08002 * 119.74898 * 179.74965 * 16 15 14 28 28 H 0.96696 * 113.99962 * 269.98085 * 18 17 16 29 29 H 1.08999 * 109.25352 * 221.92549 * 19 15 14 30 30 H 1.09002 * 109.24341 * 102.49998 * 19 15 14 31 31 H 1.08996 * 109.68623 * 291.39421 * 20 19 15 32 32 H 1.09005 * 109.68055 * 170.84754 * 20 19 15 33 33 H 1.08996 * 109.68002 * 49.81839 * 21 20 19 34 34 H 1.08999 * 109.67815 * 170.32982 * 21 20 19 35 35 H 1.08996 * 109.24729 * 41.96953 * 22 14 13 36 36 H 1.08994 * 109.24688 * 282.54724 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6240 -2.5574 0.8881 11 7 0.4067 -2.5762 -1.2014 12 6 2.2302 -3.6447 -0.0015 13 6 2.6020 -4.2380 -1.1892 14 6 3.5042 -5.2940 -1.2007 15 6 4.0363 -5.7520 -0.0154 16 6 3.6613 -5.1591 1.1821 17 6 2.7609 -4.1071 1.1938 18 8 2.3988 -3.5311 2.3703 19 6 5.0303 -6.8824 0.0439 20 6 5.0067 -7.6869 -1.2541 21 6 5.1469 -6.7126 -2.4296 22 6 3.8604 -5.8964 -2.5349 23 1 -0.4850 0.8401 0.0004 24 1 0.9651 -2.5242 -2.0402 25 1 -0.1572 -3.4128 -1.1936 26 1 2.1878 -3.8781 -2.1195 27 1 4.0752 -5.5206 2.1118 28 1 1.6255 -3.9371 2.7853 29 1 4.7798 -7.5379 0.8778 30 1 6.0297 -6.4744 0.1958 31 1 4.0629 -8.2262 -1.3346 32 1 5.8360 -8.3943 -1.2626 33 1 5.9914 -6.0459 -2.2550 34 1 5.3047 -7.2709 -3.3523 35 1 3.9998 -5.0982 -3.2638 36 1 3.0490 -6.5454 -2.8642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:16 Heat of formation + Delta-G solvation = -34.728334 kcal Electronic energy + Delta-G solvation = -18013.391077 eV Core-core repulsion = 15268.486613 eV Total energy + Delta-G solvation = -2744.904464 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87516 -37.43808 -35.36307 -33.77511 -32.10413 -31.24968 -28.80768 -27.85998 -26.00894 -23.59244 -22.55129 -21.88365 -20.59607 -18.91766 -17.21730 -16.35676 -15.85415 -15.12872 -15.00964 -14.44926 -14.14438 -13.89192 -13.77568 -13.58116 -12.88480 -12.72708 -12.48084 -12.26409 -11.97303 -11.65567 -11.19911 -10.90418 -10.85428 -10.78235 -10.53429 -10.48416 -10.28561 -9.97725 -9.53254 -9.18412 -8.37739 -8.08333 -7.62042 -7.07480 -5.81521 -3.93985 1.80974 1.94273 3.37428 3.44955 3.50337 4.14861 4.56319 4.71316 4.83421 4.91697 4.98815 5.28790 5.35447 5.42059 5.51738 5.62631 5.64443 5.68282 5.84356 5.89700 5.99889 6.06785 6.09289 6.25299 6.32275 6.32597 6.49002 6.65944 6.87588 7.08658 7.11810 7.45514 7.53727 7.97959 8.24657 8.37776 8.66513 9.01928 9.19585 9.72907 11.23146 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029899 B = 0.006332 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.251096 B = 4420.844323 C = 4657.384053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.082 3.918 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.051 0.949 9 C 0.261 3.739 10 H 0.049 0.951 11 N -0.811 5.811 12 C -0.096 4.096 13 C -0.118 4.118 14 C -0.088 4.088 15 C -0.091 4.091 16 C -0.152 4.152 17 C 0.104 3.896 18 O -0.485 6.485 19 C -0.073 4.073 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.076 4.076 23 H 0.254 0.746 24 H 0.317 0.683 25 H 0.297 0.703 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.378 0.622 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 -14.681 -1.978 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.124 4.124 3 Si 0.712 3.288 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.151 3.849 10 H 0.066 0.934 11 N -0.337 5.337 12 C -0.099 4.099 13 C -0.137 4.137 14 C -0.088 4.088 15 C -0.092 4.092 16 C -0.170 4.170 17 C 0.059 3.941 18 O -0.293 6.293 19 C -0.110 4.110 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.113 4.113 23 H 0.064 0.936 24 H 0.130 0.870 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.232 0.768 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.834 -13.496 -1.822 15.236 hybrid contribution 0.642 -0.108 0.000 0.651 sum 7.476 -13.603 -1.822 15.629 Atomic orbital electron populations 1.70111 1.05607 1.25435 1.47447 1.24922 0.94649 0.98459 0.94348 0.86689 0.80320 0.84388 0.77420 1.19957 1.21115 1.21084 1.20757 0.92116 0.89194 1.53442 0.93047 1.18048 0.87426 0.88776 0.90658 0.93366 1.59204 1.28144 1.41891 1.04459 1.22064 0.98640 0.97410 0.91813 1.20882 0.98578 0.96219 0.97994 1.19481 0.98194 0.97102 0.94003 1.19182 0.99503 0.98339 0.92132 1.21305 1.00861 0.97158 0.97721 1.18250 0.97159 0.92794 0.85887 1.84905 1.50652 1.59497 1.34239 1.20366 0.97853 0.94931 0.97878 1.21523 1.01705 0.97504 0.94753 1.21529 0.98001 0.97984 0.98075 1.20400 0.97384 0.99050 0.94479 0.93628 0.86983 0.89284 0.86395 0.86658 0.76800 0.91449 0.91283 0.91798 0.91942 0.91745 0.91884 0.91066 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.18 12.77 55.43 0.71 -24.47 16 2 C 0.08 2.36 5.39 -17.82 -0.10 2.26 16 3 Si 0.88 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.52 -14.68 8.71 -34.44 -0.30 -14.98 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.26 6.53 2.58 -70.02 -0.18 6.35 16 10 H 0.05 1.33 7.70 -51.93 -0.40 0.93 16 11 N -0.81 -19.02 8.14 -6.65 -0.05 -19.08 16 12 C -0.10 -2.08 4.99 -104.58 -0.52 -2.60 16 13 C -0.12 -2.25 8.84 -39.47 -0.35 -2.60 16 14 C -0.09 -1.44 5.74 -104.57 -0.60 -2.04 16 15 C -0.09 -1.45 5.74 -104.62 -0.60 -2.05 16 16 C -0.15 -2.63 9.55 -39.29 -0.38 -3.00 16 17 C 0.10 2.10 6.67 -39.32 -0.26 1.84 16 18 O -0.48 -9.64 12.66 -19.44 -0.25 -9.89 16 19 C -0.07 -0.89 5.67 -28.05 -0.16 -1.05 16 20 C -0.12 -1.23 5.98 -26.70 -0.16 -1.39 16 21 C -0.12 -1.29 5.98 -26.71 -0.16 -1.45 16 22 C -0.08 -0.98 5.67 -28.05 -0.16 -1.14 16 23 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.32 7.11 7.21 -39.29 -0.28 6.82 16 25 H 0.30 6.18 9.06 -39.29 -0.36 5.82 16 26 H 0.12 2.15 6.27 -52.49 -0.33 1.82 16 27 H 0.12 1.75 8.05 -52.49 -0.42 1.33 16 28 H 0.38 5.63 9.06 45.56 0.41 6.04 16 29 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.74 8.10 -51.93 -0.42 0.31 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 294.34 15.07 4.44 4.44 Total: -1.00 -32.01 294.34 -8.39 -40.41 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -4.29 Total: 13.37 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.92 Total: -21.85 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.65 Total: -43.55 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.25 Total: -9.89 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.01 -8.39 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.678 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds