Wall clock time and date at job start Mon Mar 30 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47352 * 299.99916 * 3 2 1 6 6 H 1.48503 * 109.47122 * 60.00402 * 3 2 1 7 7 C 1.37883 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99694 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99855 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46610 * 299.99609 * 9 7 2 11 11 N 1.46893 * 109.47472 * 59.99595 * 9 7 2 12 12 C 1.50704 * 109.46974 * 180.02562 * 9 7 2 13 13 C 1.37877 * 120.14226 * 264.99851 * 12 9 7 14 14 C 1.38905 * 120.62376 * 179.97438 * 13 12 9 15 15 C 1.37755 * 119.77148 * 359.82446 * 14 13 12 16 16 C 1.38791 * 119.73538 * 0.34162 * 15 14 13 17 17 C 1.38471 * 120.50072 * 359.71686 * 16 15 14 18 18 O 1.35904 * 120.17026 * 180.02562 * 17 16 15 19 19 C 1.50646 * 122.56075 * 180.67998 * 15 14 13 20 20 C 1.52726 * 110.58671 * 342.21570 * 19 15 14 21 21 C 1.53326 * 108.38175 * 51.12585 * 20 19 15 22 22 C 1.50660 * 117.70070 * 179.78298 * 14 13 12 23 23 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.00899 * 110.99577 * 60.00166 * 11 9 7 25 25 H 1.00902 * 111.00047 * 183.95057 * 11 9 7 26 26 H 1.08001 * 119.68520 * 359.97438 * 13 12 9 27 27 H 1.08002 * 119.74898 * 179.74965 * 16 15 14 28 28 H 0.96696 * 113.99962 * 269.98085 * 18 17 16 29 29 H 1.08999 * 109.25352 * 221.92549 * 19 15 14 30 30 H 1.09002 * 109.24341 * 102.49998 * 19 15 14 31 31 H 1.08996 * 109.68623 * 291.39421 * 20 19 15 32 32 H 1.09005 * 109.68055 * 170.84754 * 20 19 15 33 33 H 1.08996 * 109.68002 * 49.81839 * 21 20 19 34 34 H 1.08999 * 109.67815 * 170.32982 * 21 20 19 35 35 H 1.08996 * 109.24729 * 41.96953 * 22 14 13 36 36 H 1.08994 * 109.24688 * 282.54724 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6240 -2.5574 0.8881 11 7 0.4067 -2.5762 -1.2014 12 6 2.2302 -3.6447 -0.0015 13 6 2.6020 -4.2380 -1.1892 14 6 3.5042 -5.2940 -1.2007 15 6 4.0363 -5.7520 -0.0154 16 6 3.6613 -5.1591 1.1821 17 6 2.7609 -4.1071 1.1938 18 8 2.3988 -3.5311 2.3703 19 6 5.0303 -6.8824 0.0439 20 6 5.0067 -7.6869 -1.2541 21 6 5.1469 -6.7126 -2.4296 22 6 3.8604 -5.8964 -2.5349 23 1 -0.4850 0.8401 0.0004 24 1 0.9651 -2.5242 -2.0402 25 1 -0.1572 -3.4128 -1.1936 26 1 2.1878 -3.8781 -2.1195 27 1 4.0752 -5.5206 2.1118 28 1 1.6255 -3.9371 2.7853 29 1 4.7798 -7.5379 0.8778 30 1 6.0297 -6.4744 0.1958 31 1 4.0629 -8.2262 -1.3346 32 1 5.8360 -8.3943 -1.2626 33 1 5.9914 -6.0459 -2.2550 34 1 5.3047 -7.2709 -3.3523 35 1 3.9998 -5.0982 -3.2638 36 1 3.0490 -6.5454 -2.8642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:15 Heat of formation + Delta-G solvation = -57.174440 kcal Electronic energy + Delta-G solvation = -18014.364413 eV Core-core repulsion = 15268.486613 eV Total energy + Delta-G solvation = -2745.877800 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22604 -38.73899 -37.01047 -35.27879 -33.72314 -32.84774 -30.24272 -29.11280 -28.01036 -25.07778 -23.81672 -23.14369 -22.09582 -20.25616 -18.66282 -18.43693 -17.16479 -16.79102 -16.35937 -16.14254 -15.90136 -15.19124 -14.96147 -14.66189 -14.46140 -14.23740 -13.79408 -13.61886 -13.30346 -13.19658 -12.88710 -12.71810 -12.59189 -12.05343 -11.89969 -11.70713 -11.60592 -11.28736 -11.20919 -11.01785 -10.56917 -9.52319 -9.11034 -8.89630 -7.99324 -6.19082 0.40734 0.51392 1.37952 1.39453 1.50797 2.43916 2.77373 3.23336 3.43982 3.82253 3.85341 4.08258 4.08932 4.28151 4.33368 4.37563 4.46911 4.61799 4.69997 4.75275 4.93292 5.01899 5.07202 5.10514 5.15506 5.18452 5.31889 5.37625 5.49835 5.57589 5.72442 5.73383 5.82325 6.09442 6.20323 6.64347 6.98301 7.07155 7.24158 7.51380 9.03878 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029899 B = 0.006332 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.251096 B = 4420.844323 C = 4657.384053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.031 0.969 9 C 0.270 3.730 10 H 0.013 0.987 11 N -0.819 5.819 12 C -0.130 4.130 13 C -0.126 4.126 14 C -0.089 4.089 15 C -0.084 4.084 16 C -0.153 4.153 17 C 0.082 3.918 18 O -0.505 6.505 19 C -0.074 4.074 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.077 4.077 23 H 0.255 0.745 24 H 0.323 0.677 25 H 0.312 0.688 26 H 0.118 0.882 27 H 0.138 0.862 28 H 0.394 0.606 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.709 -16.531 -2.762 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.050 0.950 9 C 0.160 3.840 10 H 0.030 0.970 11 N -0.347 5.347 12 C -0.133 4.133 13 C -0.144 4.144 14 C -0.089 4.089 15 C -0.085 4.085 16 C -0.171 4.171 17 C 0.037 3.963 18 O -0.316 6.316 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.114 4.114 23 H 0.065 0.935 24 H 0.136 0.864 25 H 0.123 0.877 26 H 0.136 0.864 27 H 0.155 0.845 28 H 0.250 0.750 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.664 -15.359 -2.604 17.825 hybrid contribution 0.095 0.371 0.255 0.460 sum 8.759 -14.987 -2.349 17.517 Atomic orbital electron populations 1.70216 1.06777 1.26219 1.48396 1.25619 0.95491 1.01554 0.94119 0.85733 0.78778 0.80573 0.77783 1.20201 1.20175 1.20454 1.20983 0.91372 0.91315 1.53305 0.95032 1.17590 0.87555 0.89201 0.89659 0.96966 1.58987 1.28459 1.43020 1.04200 1.21760 0.99947 0.97893 0.93701 1.20984 0.99356 0.97064 0.96993 1.19897 0.96824 0.95987 0.96173 1.19726 0.98966 0.98565 0.91209 1.21558 0.99882 0.96197 0.99474 1.18503 0.98334 0.94064 0.85373 1.84833 1.51709 1.60598 1.34453 1.20492 0.96838 0.93961 0.99832 1.21544 1.02972 0.97456 0.93190 1.21552 0.96272 0.97913 0.99645 1.20494 0.99199 0.99530 0.92195 0.93549 0.86419 0.87711 0.86412 0.84453 0.74963 0.89741 0.90362 0.91600 0.89317 0.92289 0.89425 0.91083 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.22 12.77 21.45 0.27 -52.95 16 2 C 0.04 2.06 5.39 84.66 0.46 2.52 16 3 Si 0.95 46.20 29.54 68.60 2.03 48.22 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.53 -31.24 8.71 25.60 0.22 -31.02 16 8 H 0.03 1.93 7.74 -2.91 -0.02 1.91 16 9 C 0.27 14.12 2.58 43.43 0.11 14.23 16 10 H 0.01 0.73 7.70 -2.39 -0.02 0.71 16 11 N -0.82 -39.66 8.14 -174.96 -1.42 -41.08 16 12 C -0.13 -5.79 4.99 -19.83 -0.10 -5.88 16 13 C -0.13 -4.79 8.84 22.34 0.20 -4.60 16 14 C -0.09 -2.78 5.74 -19.83 -0.11 -2.89 16 15 C -0.08 -2.50 5.74 -19.86 -0.11 -2.61 16 16 C -0.15 -5.11 9.55 22.46 0.21 -4.90 16 17 C 0.08 3.38 6.67 22.44 0.15 3.53 16 18 O -0.51 -20.83 12.66 -92.47 -1.17 -22.00 16 19 C -0.07 -1.53 5.67 29.74 0.17 -1.36 16 20 C -0.11 -1.87 5.98 30.61 0.18 -1.69 16 21 C -0.12 -2.08 5.98 30.61 0.18 -1.90 16 22 C -0.08 -1.79 5.67 29.74 0.17 -1.63 16 23 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 24 H 0.32 14.84 7.21 -89.69 -0.65 14.20 16 25 H 0.31 13.36 9.06 -89.69 -0.81 12.55 16 26 H 0.12 4.35 6.27 -2.91 -0.02 4.34 16 27 H 0.14 3.90 8.05 -2.91 -0.02 3.87 16 28 H 0.39 12.39 9.06 -74.06 -0.67 11.72 16 29 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -70.20 294.34 0.42 -69.78 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -1.02 Total: 36.23 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 1.73 Total: -38.20 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -1.15 Total: -94.03 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -1.17 Total: -22.00 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -70.20 0.42 -69.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.609 kcal (2) G-P(sol) polarization free energy of solvation -70.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds