Wall clock time and date at job start Mon Mar 30 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99815 * 2 1 4 4 H 1.48506 * 109.47306 * 240.00068 * 3 2 1 5 5 H 1.48504 * 109.47469 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47160 * 119.99967 * 3 2 1 7 7 C 1.37880 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99856 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.47184 * 60.00097 * 9 7 2 11 11 N 1.46894 * 109.47364 * 300.00333 * 9 7 2 12 12 C 1.50694 * 109.47207 * 180.02562 * 9 7 2 13 13 C 1.37871 * 120.14493 * 99.99864 * 12 9 7 14 14 C 1.38915 * 120.62827 * 179.97438 * 13 12 9 15 15 C 1.37759 * 119.76246 * 359.75336 * 14 13 12 16 16 C 1.38776 * 119.74078 * 0.38075 * 15 14 13 17 17 C 1.38467 * 120.50397 * 359.73753 * 16 15 14 18 18 O 1.35903 * 120.17603 * 180.02562 * 17 16 15 19 19 C 1.50642 * 122.54669 * 180.72911 * 15 14 13 20 20 C 1.52717 * 110.59833 * 342.00168 * 19 15 14 21 21 C 1.53321 * 108.39840 * 51.14800 * 20 19 15 22 22 C 1.50650 * 117.71145 * 179.42313 * 14 13 12 23 23 H 0.96997 * 120.00363 * 359.97438 * 1 2 3 24 24 H 1.00905 * 111.00519 * 176.04439 * 11 9 7 25 25 H 1.00901 * 111.00370 * 300.00070 * 11 9 7 26 26 H 1.07998 * 119.68812 * 0.02562 * 13 12 9 27 27 H 1.08008 * 119.74972 * 179.71654 * 16 15 14 28 28 H 0.96699 * 113.99498 * 269.97817 * 18 17 16 29 29 H 1.09006 * 109.24896 * 102.29179 * 19 15 14 30 30 H 1.09004 * 109.25315 * 221.70824 * 19 15 14 31 31 H 1.09007 * 109.68524 * 170.87381 * 20 19 15 32 32 H 1.09008 * 109.67899 * 291.41876 * 20 19 15 33 33 H 1.08996 * 109.67851 * 49.87363 * 21 20 19 34 34 H 1.08996 * 109.67945 * 170.42893 * 21 20 19 35 35 H 1.09005 * 109.25256 * 282.59102 * 22 14 13 36 36 H 1.08996 * 109.24814 * 42.01148 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5773 1.1991 12 6 2.2303 -3.6446 -0.0005 13 6 2.5229 -4.3054 1.1736 14 6 3.4236 -5.3629 1.1851 15 6 4.0273 -5.7597 0.0121 16 6 3.7370 -5.0947 -1.1708 17 6 2.8411 -4.0389 -1.1820 18 8 2.5612 -3.3927 -2.3444 19 6 5.0005 -6.9078 -0.0504 20 6 5.5352 -7.2353 1.3421 21 6 4.3429 -7.4002 2.2918 22 6 3.7048 -6.0293 2.5065 23 1 -0.4850 0.8400 0.0004 24 1 -0.1571 -3.4139 1.1906 25 1 0.9652 -2.5260 2.0381 26 1 2.0467 -3.9985 2.0931 27 1 4.2137 -5.4027 -2.0898 28 1 3.1425 -2.6417 -2.5266 29 1 4.4964 -7.7845 -0.4572 30 1 5.8328 -6.6385 -0.7008 31 1 6.1074 -8.1625 1.3070 32 1 6.1728 -6.4229 1.6909 33 1 3.6136 -8.0796 1.8508 34 1 4.6864 -7.7987 3.2464 35 1 4.3830 -5.4040 3.0873 36 1 2.7702 -6.1497 3.0543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:19 Heat of formation + Delta-G solvation = -36.026191 kcal Electronic energy + Delta-G solvation = -18025.823639 eV Core-core repulsion = 15280.862896 eV Total energy + Delta-G solvation = -2744.960743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85451 -37.39135 -35.32317 -33.77549 -32.11422 -31.27355 -28.78138 -27.83492 -26.06954 -23.59364 -22.52723 -21.86377 -20.57694 -18.89059 -17.13286 -16.43928 -15.83745 -15.13842 -14.92698 -14.46951 -14.20290 -13.87921 -13.77213 -13.56646 -12.89401 -12.70595 -12.46077 -12.27255 -12.00225 -11.67801 -11.14986 -10.93867 -10.85961 -10.80316 -10.59285 -10.47558 -10.30157 -9.96513 -9.52417 -9.25364 -8.43408 -8.07663 -7.57925 -7.06579 -5.86461 -4.02474 1.83037 1.95976 3.33576 3.39229 3.40818 4.14647 4.49068 4.75568 4.84198 4.92123 5.06551 5.29194 5.35957 5.39539 5.52346 5.63099 5.65647 5.68749 5.85689 5.90763 6.00319 6.06669 6.09725 6.25979 6.32556 6.35438 6.51095 6.67254 6.90991 7.12850 7.13694 7.47219 7.57444 7.87899 8.22123 8.43584 8.65002 9.01518 9.15438 9.65854 11.17609 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030663 B = 0.006306 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.926226 B = 4438.957045 C = 4676.023718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.085 3.915 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.258 3.742 10 H 0.055 0.945 11 N -0.811 5.811 12 C -0.095 4.095 13 C -0.121 4.121 14 C -0.088 4.088 15 C -0.092 4.092 16 C -0.152 4.152 17 C 0.107 3.893 18 O -0.493 6.493 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.076 4.076 23 H 0.256 0.744 24 H 0.298 0.702 25 H 0.316 0.684 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.389 0.611 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 -12.591 2.261 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.122 4.122 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.569 4.569 8 H 0.067 0.933 9 C 0.148 3.852 10 H 0.073 0.927 11 N -0.337 5.337 12 C -0.098 4.098 13 C -0.140 4.140 14 C -0.088 4.088 15 C -0.092 4.092 16 C -0.171 4.171 17 C 0.062 3.938 18 O -0.303 6.303 19 C -0.110 4.110 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.113 4.113 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.129 0.871 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.244 0.756 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.033 -12.196 1.943 14.733 hybrid contribution 1.413 0.541 0.193 1.525 sum 9.447 -11.655 2.135 15.154 Atomic orbital electron populations 1.70092 1.05668 1.25781 1.46333 1.24936 0.94618 0.98421 0.94210 0.86833 0.79726 0.83824 0.78446 1.20398 1.21309 1.20448 1.20682 0.91844 0.89450 1.54887 0.93270 1.18093 0.87620 0.88498 0.90967 0.92684 1.59178 1.28082 1.42045 1.04401 1.22073 0.98711 0.97570 0.91468 1.20896 0.99069 0.95981 0.98040 1.19470 0.97963 0.97200 0.94187 1.19173 0.99476 0.98178 0.92376 1.21303 0.99580 0.98619 0.97611 1.18230 0.95931 0.93866 0.85788 1.84692 1.60508 1.47878 1.37247 1.20359 0.97130 0.96170 0.97324 1.21526 0.97579 1.01211 0.95240 1.21525 0.97657 0.97097 0.99232 1.20400 1.00825 0.95574 0.94517 0.93367 0.89129 0.87074 0.86454 0.86687 0.75554 0.91361 0.91434 0.91950 0.91736 0.91824 0.91905 0.91121 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.64 12.77 55.43 0.71 -23.93 16 2 C 0.09 2.36 5.39 -17.82 -0.10 2.27 16 3 Si 0.88 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.36 8.71 -34.44 -0.30 -14.66 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 9 C 0.26 6.47 2.52 -70.02 -0.18 6.29 16 10 H 0.06 1.57 7.87 -51.93 -0.41 1.17 16 11 N -0.81 -19.24 8.01 -6.65 -0.05 -19.29 16 12 C -0.10 -2.06 5.02 -104.58 -0.52 -2.59 16 13 C -0.12 -2.31 8.82 -39.47 -0.35 -2.66 16 14 C -0.09 -1.45 5.74 -104.57 -0.60 -2.05 16 15 C -0.09 -1.47 5.74 -104.63 -0.60 -2.07 16 16 C -0.15 -2.66 9.55 -39.30 -0.38 -3.03 16 17 C 0.11 2.17 6.67 -39.32 -0.26 1.91 16 18 O -0.49 -9.94 12.77 -19.44 -0.25 -10.18 16 19 C -0.07 -0.89 5.67 -28.06 -0.16 -1.05 16 20 C -0.12 -1.26 5.98 -26.71 -0.16 -1.41 16 21 C -0.12 -1.27 5.98 -26.70 -0.16 -1.43 16 22 C -0.08 -0.99 5.67 -28.05 -0.16 -1.15 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.30 6.41 9.06 -39.29 -0.36 6.05 16 25 H 0.32 7.11 7.28 -39.29 -0.29 6.83 16 26 H 0.12 2.13 6.22 -52.49 -0.33 1.81 16 27 H 0.12 1.76 8.05 -52.48 -0.42 1.34 16 28 H 0.39 6.60 9.06 45.56 0.41 7.01 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.71 8.10 -51.92 -0.42 0.29 16 33 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 LS Contribution 294.45 15.07 4.44 4.44 Total: -1.00 -30.52 294.45 -8.40 -38.92 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -4.30 Total: 15.54 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -3.92 Total: -21.63 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.65 Total: -43.22 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.25 Total: -10.18 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.52 -8.40 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.897 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds