Wall clock time and date at job start Mon Mar 30 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99815 * 2 1 4 4 H 1.48506 * 109.47306 * 240.00068 * 3 2 1 5 5 H 1.48504 * 109.47469 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47160 * 119.99967 * 3 2 1 7 7 C 1.37880 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99856 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.47184 * 60.00097 * 9 7 2 11 11 N 1.46894 * 109.47364 * 300.00333 * 9 7 2 12 12 C 1.50694 * 109.47207 * 180.02562 * 9 7 2 13 13 C 1.37871 * 120.14493 * 99.99864 * 12 9 7 14 14 C 1.38915 * 120.62827 * 179.97438 * 13 12 9 15 15 C 1.37759 * 119.76246 * 359.75336 * 14 13 12 16 16 C 1.38776 * 119.74078 * 0.38075 * 15 14 13 17 17 C 1.38467 * 120.50397 * 359.73753 * 16 15 14 18 18 O 1.35903 * 120.17603 * 180.02562 * 17 16 15 19 19 C 1.50642 * 122.54669 * 180.72911 * 15 14 13 20 20 C 1.52717 * 110.59833 * 342.00168 * 19 15 14 21 21 C 1.53321 * 108.39840 * 51.14800 * 20 19 15 22 22 C 1.50650 * 117.71145 * 179.42313 * 14 13 12 23 23 H 0.96997 * 120.00363 * 359.97438 * 1 2 3 24 24 H 1.00905 * 111.00519 * 176.04439 * 11 9 7 25 25 H 1.00901 * 111.00370 * 300.00070 * 11 9 7 26 26 H 1.07998 * 119.68812 * 0.02562 * 13 12 9 27 27 H 1.08008 * 119.74972 * 179.71654 * 16 15 14 28 28 H 0.96699 * 113.99498 * 269.97817 * 18 17 16 29 29 H 1.09006 * 109.24896 * 102.29179 * 19 15 14 30 30 H 1.09004 * 109.25315 * 221.70824 * 19 15 14 31 31 H 1.09007 * 109.68524 * 170.87381 * 20 19 15 32 32 H 1.09008 * 109.67899 * 291.41876 * 20 19 15 33 33 H 1.08996 * 109.67851 * 49.87363 * 21 20 19 34 34 H 1.08996 * 109.67945 * 170.42893 * 21 20 19 35 35 H 1.09005 * 109.25256 * 282.59102 * 22 14 13 36 36 H 1.08996 * 109.24814 * 42.01148 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5773 1.1991 12 6 2.2303 -3.6446 -0.0005 13 6 2.5229 -4.3054 1.1736 14 6 3.4236 -5.3629 1.1851 15 6 4.0273 -5.7597 0.0121 16 6 3.7370 -5.0947 -1.1708 17 6 2.8411 -4.0389 -1.1820 18 8 2.5612 -3.3927 -2.3444 19 6 5.0005 -6.9078 -0.0504 20 6 5.5352 -7.2353 1.3421 21 6 4.3429 -7.4002 2.2918 22 6 3.7048 -6.0293 2.5065 23 1 -0.4850 0.8400 0.0004 24 1 -0.1571 -3.4139 1.1906 25 1 0.9652 -2.5260 2.0381 26 1 2.0467 -3.9985 2.0931 27 1 4.2137 -5.4027 -2.0898 28 1 3.1425 -2.6417 -2.5266 29 1 4.4964 -7.7845 -0.4572 30 1 5.8328 -6.6385 -0.7008 31 1 6.1074 -8.1625 1.3070 32 1 6.1728 -6.4229 1.6909 33 1 3.6136 -8.0796 1.8508 34 1 4.6864 -7.7987 3.2464 35 1 4.3830 -5.4040 3.0873 36 1 2.7702 -6.1497 3.0543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:18 Heat of formation + Delta-G solvation = -57.078685 kcal Electronic energy + Delta-G solvation = -18026.736544 eV Core-core repulsion = 15280.862896 eV Total energy + Delta-G solvation = -2745.873648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21753 -38.71024 -36.98628 -35.27495 -33.72469 -32.83947 -30.23305 -29.09830 -28.03601 -25.06859 -23.79476 -23.13236 -22.08603 -20.22244 -18.67206 -18.39182 -17.16645 -16.77993 -16.37458 -16.04318 -15.95278 -15.19790 -14.97942 -14.65549 -14.43175 -14.24679 -13.80009 -13.61431 -13.27851 -13.22010 -12.85417 -12.66708 -12.60445 -12.10655 -11.84266 -11.70383 -11.59213 -11.28618 -11.21367 -11.00674 -10.56080 -9.52511 -9.07454 -8.92242 -7.97620 -6.20814 0.40850 0.51979 1.42673 1.43568 1.51116 2.44481 2.75194 3.24779 3.51372 3.82520 3.86408 4.07821 4.09045 4.28509 4.33971 4.38723 4.46625 4.61838 4.70258 4.75375 4.94202 5.01961 5.07141 5.10832 5.17267 5.18175 5.33179 5.39373 5.49941 5.57749 5.71643 5.72517 5.81727 6.08401 6.19410 6.64922 6.96290 7.07570 7.21959 7.51603 9.05451 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030663 B = 0.006306 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.926226 B = 4438.957045 C = 4676.023718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.035 3.965 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.045 0.955 9 C 0.268 3.732 10 H 0.006 0.994 11 N -0.820 5.820 12 C -0.129 4.129 13 C -0.128 4.128 14 C -0.088 4.088 15 C -0.085 4.085 16 C -0.152 4.152 17 C 0.082 3.918 18 O -0.508 6.508 19 C -0.074 4.074 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.078 4.078 23 H 0.255 0.745 24 H 0.309 0.691 25 H 0.323 0.677 26 H 0.119 0.881 27 H 0.137 0.863 28 H 0.396 0.604 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -14.315 3.144 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.169 4.169 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.063 0.937 9 C 0.158 3.842 10 H 0.024 0.976 11 N -0.347 5.347 12 C -0.132 4.132 13 C -0.146 4.146 14 C -0.088 4.088 15 C -0.085 4.085 16 C -0.171 4.171 17 C 0.037 3.963 18 O -0.319 6.319 19 C -0.111 4.111 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.115 4.115 23 H 0.064 0.936 24 H 0.120 0.880 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.155 0.845 28 H 0.253 0.747 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.429 -13.930 2.825 17.629 hybrid contribution 0.702 0.970 -0.080 1.200 sum 11.131 -12.960 2.745 17.303 Atomic orbital electron populations 1.70238 1.07210 1.26432 1.47818 1.25705 0.95390 1.01845 0.93930 0.85776 0.78425 0.79527 0.78697 1.19472 1.21165 1.19995 1.20958 0.91731 0.90759 1.54100 0.93724 1.17622 0.87635 0.89587 0.89394 0.97610 1.58991 1.28479 1.42969 1.04308 1.21768 0.99932 0.98041 0.93412 1.21004 0.99844 0.96744 0.97050 1.19891 0.96526 0.96121 0.96291 1.19720 0.98974 0.98391 0.91403 1.21554 0.98684 0.97522 0.99306 1.18496 0.97250 0.95203 0.85307 1.84657 1.61350 1.48441 1.37495 1.20485 0.96643 0.94827 0.99109 1.21554 0.97560 1.02447 0.93790 1.21544 0.97605 0.95400 1.00648 1.20498 1.01635 0.96916 0.92407 0.93588 0.87956 0.86337 0.86346 0.84480 0.74679 0.89936 0.90042 0.89242 0.92060 0.91794 0.89523 0.90427 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.94 12.77 21.45 0.27 -52.67 16 2 C 0.03 1.97 5.39 84.65 0.46 2.43 16 3 Si 0.95 44.11 29.54 68.60 2.03 46.13 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -29.99 8.71 25.60 0.22 -29.76 16 8 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 9 C 0.27 14.05 2.52 43.42 0.11 14.16 16 10 H 0.01 0.37 7.87 -2.38 -0.02 0.35 16 11 N -0.82 -40.35 8.01 -174.96 -1.40 -41.76 16 12 C -0.13 -5.73 5.02 -19.84 -0.10 -5.83 16 13 C -0.13 -4.87 8.82 22.35 0.20 -4.68 16 14 C -0.09 -2.76 5.74 -19.83 -0.11 -2.87 16 15 C -0.08 -2.51 5.74 -19.87 -0.11 -2.62 16 16 C -0.15 -5.12 9.55 22.45 0.21 -4.90 16 17 C 0.08 3.41 6.67 22.44 0.15 3.56 16 18 O -0.51 -21.29 12.77 -92.46 -1.18 -22.47 16 19 C -0.07 -1.51 5.67 29.74 0.17 -1.34 16 20 C -0.12 -1.94 5.98 30.61 0.18 -1.76 16 21 C -0.11 -2.00 5.98 30.61 0.18 -1.81 16 22 C -0.08 -1.80 5.67 29.74 0.17 -1.63 16 23 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 24 H 0.31 13.82 9.06 -89.69 -0.81 13.01 16 25 H 0.32 14.93 7.28 -89.69 -0.65 14.28 16 26 H 0.12 4.34 6.22 -2.91 -0.02 4.32 16 27 H 0.14 3.91 8.05 -2.91 -0.02 3.89 16 28 H 0.40 14.16 9.06 -74.06 -0.67 13.49 16 29 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.08 1.49 8.12 -2.38 -0.02 1.47 16 31 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.09 8.10 -2.38 -0.02 1.07 16 33 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 Total: -1.00 -67.37 294.45 0.42 -66.95 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -1.02 Total: 40.88 kcal Atomic # 6 Polarization: -38.79 SS G_CDS: 1.73 Total: -37.07 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -1.13 Total: -94.43 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.18 Total: -22.47 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.37 0.42 -66.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.876 kcal (2) G-P(sol) polarization free energy of solvation -67.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds