Wall clock time and date at job start Mon Mar 30 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36169 * 117.00114 * 2 1 4 4 C 1.46980 * 126.93701 * 89.96993 * 3 2 1 5 5 C 1.39381 * 134.31643 * 0.02562 * 4 3 2 6 6 C 1.36741 * 119.71998 * 180.02562 * 5 4 3 7 7 C 1.38756 * 120.41528 * 359.75275 * 6 5 4 8 8 C 1.37841 * 120.68071 * 0.51942 * 7 6 5 9 9 C 1.38968 * 119.82040 * 359.46557 * 8 7 6 10 10 O 1.34797 * 133.42927 * 180.23927 * 9 8 7 11 11 C 1.34285 * 126.92680 * 269.99684 * 3 2 1 12 12 C 1.50698 * 124.96973 * 359.97438 * 11 3 2 13 13 H 1.09004 * 109.47169 * 345.00581 * 12 11 3 14 14 N 1.46896 * 109.47157 * 225.00219 * 12 11 3 15 15 C 1.50697 * 109.47139 * 105.00101 * 12 11 3 16 16 H 1.08004 * 119.99861 * 0.02562 * 15 12 11 17 17 C 1.37883 * 120.00451 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99273 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00109 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47312 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46724 * 120.00360 * 19 17 15 22 22 H 1.48500 * 109.47179 * 239.99873 * 19 17 15 23 23 H 1.08992 * 109.47545 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47355 * 300.00897 * 1 2 3 25 25 H 1.09002 * 109.47281 * 60.00281 * 1 2 3 26 26 H 1.07996 * 120.14557 * 0.04929 * 5 4 3 27 27 H 1.08003 * 119.79319 * 179.97438 * 6 5 4 28 28 H 1.07994 * 119.66118 * 180.28365 * 7 6 5 29 29 H 1.08002 * 120.09288 * 179.74904 * 8 7 6 30 30 H 1.00906 * 111.00370 * 176.04734 * 14 12 11 31 31 H 1.00901 * 111.00166 * 299.99887 * 14 12 11 32 32 H 0.97004 * 119.99793 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 2.4477 2.0005 1.1748 5 6 2.3512 1.8118 2.5524 6 6 2.8363 2.7663 3.4030 7 6 3.4278 3.9176 2.9031 8 6 3.5270 4.1240 1.5439 9 6 3.0407 3.1663 0.6621 10 8 2.9977 3.0816 -0.6825 11 6 2.4136 1.9321 -1.0735 12 6 2.2015 1.5146 -2.5059 13 1 1.9592 0.4524 -2.5427 14 7 3.4278 1.7640 -3.2753 15 6 1.0665 2.3095 -3.0980 16 1 0.5505 3.0440 -2.4973 17 6 0.6873 2.1000 -4.4070 18 7 1.3159 1.2060 -5.1386 19 14 -0.7192 3.0859 -5.1412 20 1 -1.2556 4.0199 -4.1189 21 1 -0.2247 3.8604 -6.3077 22 1 -1.7951 2.1616 -5.5809 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8956 0.9154 2.9464 27 1 2.7618 2.6214 4.4707 28 1 3.8109 4.6613 3.5860 29 1 3.9856 5.0255 1.1651 30 1 3.3332 1.4331 -4.2238 31 1 3.6737 2.7424 -3.2565 32 1 1.0494 1.0589 -6.0596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260989823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:47 Heat of formation + Delta-G solvation = -12.862553 kcal Electronic energy + Delta-G solvation = -17780.213516 eV Core-core repulsion = 14900.424129 eV Total energy + Delta-G solvation = -2879.789387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.90250 -37.61417 -37.48821 -34.75292 -31.73327 -31.26306 -29.98245 -28.58621 -26.61091 -25.80302 -23.34312 -22.38781 -20.87949 -20.15016 -17.49281 -16.98333 -16.47362 -15.63176 -15.51847 -14.92188 -14.62507 -14.39008 -14.27231 -13.97728 -13.40171 -13.06772 -12.94442 -12.12189 -11.95606 -11.65590 -11.46074 -11.27641 -11.07657 -10.97884 -10.75853 -10.22491 -10.14171 -9.40333 -9.28569 -8.82130 -8.26263 -7.58277 -7.28183 -6.25237 -4.44023 1.30740 1.66845 2.75555 3.13296 3.22429 3.26788 3.30559 3.96941 4.20551 4.36507 4.88522 4.99367 5.14166 5.19356 5.54362 5.57551 5.70412 5.75606 5.89273 5.96187 6.10812 6.19972 6.44823 6.53700 6.59700 6.65977 6.73635 6.90284 7.25407 7.58096 7.70816 7.89595 8.09358 8.45540 8.72770 8.96477 9.28481 10.72365 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.007026 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.721141 B = 3984.366772 C = 4271.039020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C -0.049 4.049 4 C -0.128 4.128 5 C -0.074 4.074 6 C -0.143 4.143 7 C -0.111 4.111 8 C -0.103 4.103 9 C 0.045 3.955 10 O -0.174 6.174 11 C 0.112 3.888 12 C 0.277 3.723 13 H 0.079 0.921 14 N -0.848 5.848 15 C -0.554 4.554 16 H 0.059 0.941 17 C 0.071 3.929 18 N -0.889 5.889 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.087 0.913 24 H 0.035 0.965 25 H 0.058 0.942 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.361 0.639 31 H 0.320 0.680 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 2.505 11.515 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.211 6.211 3 C -0.095 4.095 4 C -0.130 4.130 5 C -0.093 4.093 6 C -0.161 4.161 7 C -0.129 4.129 8 C -0.122 4.122 9 C -0.003 4.003 10 O -0.075 6.075 11 C 0.063 3.937 12 C 0.167 3.833 13 H 0.096 0.904 14 N -0.379 5.379 15 C -0.594 4.594 16 H 0.077 0.923 17 C -0.133 4.133 18 N -0.527 5.527 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.105 0.895 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.179 0.821 31 H 0.129 0.871 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.208 1.931 11.666 11.886 hybrid contribution -1.724 1.153 -0.921 2.269 sum -0.516 3.084 10.745 11.191 Atomic orbital electron populations 1.23057 0.80474 1.02327 1.00897 1.86094 1.19166 1.22292 1.93555 1.18755 1.09917 0.91309 0.89555 1.20125 1.02952 0.95440 0.94455 1.20189 0.99268 0.99103 0.90694 1.20656 1.01297 0.94756 0.99369 1.20771 1.00445 0.98018 0.93629 1.19887 1.02942 0.98094 0.91254 1.19549 1.01856 0.96503 0.82392 1.84172 1.66207 1.37390 1.19706 1.23858 0.90408 0.81371 0.98106 1.17936 0.88764 0.97465 0.79161 0.90387 1.59433 1.35076 1.22012 1.21402 1.21748 1.17695 1.22536 0.97418 0.92274 1.24984 0.96749 0.94805 0.96729 1.69739 1.41072 1.32751 1.09117 0.86361 0.81668 0.79919 0.79095 1.19630 1.20627 1.20582 0.89505 0.94628 0.92364 0.86099 0.85968 0.85384 0.85347 0.82103 0.87128 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.14 101.05 1.13 1.60 16 2 O -0.30 -6.25 10.33 -20.28 -0.21 -6.46 16 3 C -0.05 -1.09 6.51 -37.44 -0.24 -1.34 16 4 C -0.13 -2.54 6.40 -105.08 -0.67 -3.21 16 5 C -0.07 -1.20 10.05 -39.70 -0.40 -1.60 16 6 C -0.14 -1.90 9.98 -39.93 -0.40 -2.30 16 7 C -0.11 -1.44 10.01 -39.54 -0.40 -1.84 16 8 C -0.10 -1.60 10.07 -39.46 -0.40 -2.00 16 9 C 0.04 0.88 7.41 -38.46 -0.29 0.59 16 10 O -0.17 -3.92 10.49 3.14 0.03 -3.88 16 11 C 0.11 2.66 6.01 -35.70 -0.21 2.45 16 12 C 0.28 7.04 3.15 -70.02 -0.22 6.82 16 13 H 0.08 2.15 7.90 -51.93 -0.41 1.74 16 14 N -0.85 -20.69 9.18 -6.65 -0.06 -20.75 16 15 C -0.55 -14.76 8.71 -34.44 -0.30 -15.06 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 17 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 18 N -0.89 -23.73 11.54 55.43 0.64 -23.09 16 19 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 28 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.36 9.14 7.08 -39.29 -0.28 8.86 16 31 H 0.32 7.53 8.90 -39.29 -0.35 7.18 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -28.50 283.79 -6.38 -34.88 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -3.54 Total: 13.74 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.50 Total: -14.13 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.58 Total: -43.84 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.18 Total: -10.34 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.50 -6.38 -34.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.020 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds