Wall clock time and date at job start Mon Mar 30 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36169 * 117.00114 * 2 1 4 4 C 1.46980 * 126.93701 * 89.96993 * 3 2 1 5 5 C 1.39381 * 134.31643 * 0.02562 * 4 3 2 6 6 C 1.36741 * 119.71998 * 180.02562 * 5 4 3 7 7 C 1.38756 * 120.41528 * 359.75275 * 6 5 4 8 8 C 1.37841 * 120.68071 * 0.51942 * 7 6 5 9 9 C 1.38968 * 119.82040 * 359.46557 * 8 7 6 10 10 O 1.34797 * 133.42927 * 180.23927 * 9 8 7 11 11 C 1.34285 * 126.92680 * 269.99684 * 3 2 1 12 12 C 1.50698 * 124.96973 * 359.97438 * 11 3 2 13 13 H 1.09004 * 109.47169 * 345.00581 * 12 11 3 14 14 N 1.46896 * 109.47157 * 225.00219 * 12 11 3 15 15 C 1.50697 * 109.47139 * 105.00101 * 12 11 3 16 16 H 1.08004 * 119.99861 * 0.02562 * 15 12 11 17 17 C 1.37883 * 120.00451 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99273 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00109 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47312 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46724 * 120.00360 * 19 17 15 22 22 H 1.48500 * 109.47179 * 239.99873 * 19 17 15 23 23 H 1.08992 * 109.47545 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47355 * 300.00897 * 1 2 3 25 25 H 1.09002 * 109.47281 * 60.00281 * 1 2 3 26 26 H 1.07996 * 120.14557 * 0.04929 * 5 4 3 27 27 H 1.08003 * 119.79319 * 179.97438 * 6 5 4 28 28 H 1.07994 * 119.66118 * 180.28365 * 7 6 5 29 29 H 1.08002 * 120.09288 * 179.74904 * 8 7 6 30 30 H 1.00906 * 111.00370 * 176.04734 * 14 12 11 31 31 H 1.00901 * 111.00166 * 299.99887 * 14 12 11 32 32 H 0.97004 * 119.99793 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 2.4477 2.0005 1.1748 5 6 2.3512 1.8118 2.5524 6 6 2.8363 2.7663 3.4030 7 6 3.4278 3.9176 2.9031 8 6 3.5270 4.1240 1.5439 9 6 3.0407 3.1663 0.6621 10 8 2.9977 3.0816 -0.6825 11 6 2.4136 1.9321 -1.0735 12 6 2.2015 1.5146 -2.5059 13 1 1.9592 0.4524 -2.5427 14 7 3.4278 1.7640 -3.2753 15 6 1.0665 2.3095 -3.0980 16 1 0.5505 3.0440 -2.4973 17 6 0.6873 2.1000 -4.4070 18 7 1.3159 1.2060 -5.1386 19 14 -0.7192 3.0859 -5.1412 20 1 -1.2556 4.0199 -4.1189 21 1 -0.2247 3.8604 -6.3077 22 1 -1.7951 2.1616 -5.5809 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8956 0.9154 2.9464 27 1 2.7618 2.6214 4.4707 28 1 3.8109 4.6613 3.5860 29 1 3.9856 5.0255 1.1651 30 1 3.3332 1.4331 -4.2238 31 1 3.6737 2.7424 -3.2565 32 1 1.0494 1.0589 -6.0596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260989823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:46 Heat of formation + Delta-G solvation = -32.314567 kcal Electronic energy + Delta-G solvation = -17781.057019 eV Core-core repulsion = 14900.424129 eV Total energy + Delta-G solvation = -2880.632890 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.40358 -39.12579 -38.84144 -36.69114 -33.54548 -32.83289 -31.25761 -30.13791 -28.31737 -27.54537 -24.97000 -23.76015 -22.34873 -21.76593 -18.96176 -18.84737 -17.98216 -17.28955 -17.22032 -16.42605 -16.29409 -15.93583 -15.71599 -15.44098 -14.86893 -14.71762 -14.58597 -13.69696 -13.46905 -13.16893 -12.98427 -12.92848 -12.76377 -12.67015 -12.19637 -12.01662 -11.98835 -10.89487 -10.83974 -10.74973 -9.57790 -9.42530 -8.94590 -8.24476 -6.53083 -0.00572 0.40923 1.18543 1.33208 1.36496 1.47882 1.79648 2.30256 2.70934 2.87529 2.94850 3.48732 3.89788 4.08401 4.19849 4.35227 4.41005 4.45419 4.48741 4.53601 4.61572 4.70708 4.87460 5.06182 5.20400 5.34402 5.43166 5.49909 5.52325 5.74789 5.88939 6.23825 6.42842 6.51533 6.69901 6.94798 7.22977 8.71148 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.007026 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.721141 B = 3984.366772 C = 4271.039020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C -0.049 4.049 4 C -0.159 4.159 5 C -0.084 4.084 6 C -0.127 4.127 7 C -0.087 4.087 8 C -0.114 4.114 9 C 0.016 3.984 10 O -0.194 6.194 11 C 0.068 3.932 12 C 0.285 3.715 13 H 0.044 0.956 14 N -0.842 5.842 15 C -0.570 4.570 16 H 0.044 0.956 17 C 0.031 3.969 18 N -0.909 5.909 19 Si 0.966 3.034 20 H -0.275 1.275 21 H -0.272 1.272 22 H -0.272 1.272 23 H 0.119 0.881 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.135 0.865 27 H 0.168 0.832 28 H 0.178 0.822 29 H 0.150 0.850 30 H 0.354 0.646 31 H 0.323 0.677 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 3.782 14.259 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C -0.095 4.095 4 C -0.160 4.160 5 C -0.102 4.102 6 C -0.145 4.145 7 C -0.104 4.104 8 C -0.133 4.133 9 C -0.031 4.031 10 O -0.095 6.095 11 C 0.018 3.982 12 C 0.175 3.825 13 H 0.062 0.938 14 N -0.372 5.372 15 C -0.610 4.610 16 H 0.063 0.937 17 C -0.171 4.171 18 N -0.548 5.548 19 Si 0.791 3.209 20 H -0.199 1.199 21 H -0.197 1.197 22 H -0.197 1.197 23 H 0.137 0.863 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.153 0.847 27 H 0.186 0.814 28 H 0.195 0.805 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.132 0.868 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.986 3.205 14.424 14.808 hybrid contribution -1.608 0.765 -1.551 2.361 sum -0.622 3.970 12.873 13.486 Atomic orbital electron populations 1.23203 0.78520 1.04373 1.00497 1.86010 1.21043 1.22388 1.93740 1.19121 1.08759 0.90963 0.90631 1.20280 1.04813 0.95411 0.95492 1.20529 0.99675 1.00695 0.89292 1.21226 0.98602 0.93398 1.01232 1.21426 0.97601 0.98439 0.92949 1.20399 1.02887 0.98065 0.91906 1.20251 1.03269 0.98113 0.81462 1.84058 1.66822 1.36948 1.21714 1.23385 0.93993 0.83221 0.97595 1.17525 0.88700 0.95393 0.80911 0.93844 1.59391 1.34956 1.22134 1.20731 1.21834 1.18470 1.22728 0.97932 0.93725 1.25719 0.98909 0.95630 0.96821 1.69822 1.42029 1.33460 1.09459 0.85383 0.78822 0.78536 0.78170 1.19938 1.19739 1.19726 0.86252 0.92741 0.94963 0.84687 0.81438 0.80475 0.83245 0.82944 0.86788 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 11.14 113.37 1.26 2.26 16 2 O -0.32 -13.85 10.33 -95.48 -0.99 -14.83 16 3 C -0.05 -2.26 6.51 23.66 0.15 -2.10 16 4 C -0.16 -6.27 6.40 -20.16 -0.13 -6.40 16 5 C -0.08 -2.49 10.05 22.19 0.22 -2.27 16 6 C -0.13 -2.75 9.98 22.04 0.22 -2.53 16 7 C -0.09 -1.81 10.01 22.30 0.22 -1.59 16 8 C -0.11 -3.26 10.07 22.35 0.23 -3.04 16 9 C 0.02 0.62 7.41 22.99 0.17 0.79 16 10 O -0.19 -9.13 10.49 -11.68 -0.12 -9.25 16 11 C 0.07 3.39 6.01 24.78 0.15 3.54 16 12 C 0.29 15.44 3.15 43.42 0.14 15.58 16 13 H 0.04 2.60 7.90 -2.39 -0.02 2.58 16 14 N -0.84 -43.43 9.18 -174.96 -1.61 -45.03 16 15 C -0.57 -31.88 8.71 25.60 0.22 -31.65 16 16 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 17 C 0.03 1.66 5.38 84.66 0.46 2.12 16 18 N -0.91 -49.89 11.54 21.45 0.25 -49.65 16 19 Si 0.97 42.57 29.54 68.60 2.03 44.59 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 26 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 27 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 30 H 0.35 18.84 7.08 -89.69 -0.63 18.20 16 31 H 0.32 16.06 8.90 -89.69 -0.80 15.26 16 32 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -65.86 283.79 2.60 -63.27 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -0.28 Total: 36.19 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 3.31 Total: -25.29 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -1.36 Total: -94.68 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.11 Total: -24.08 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -65.86 2.60 -63.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.951 kcal (2) G-P(sol) polarization free energy of solvation -65.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds