Wall clock time and date at job start Mon Mar 30 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36166 * 116.99891 * 2 1 4 4 C 1.46983 * 126.93294 * 90.02768 * 3 2 1 5 5 C 1.39374 * 134.32073 * 359.97056 * 4 3 2 6 6 C 1.36737 * 119.72640 * 180.02562 * 5 4 3 7 7 C 1.38763 * 120.40897 * 359.97438 * 6 5 4 8 8 C 1.37837 * 120.68410 * 0.02562 * 7 6 5 9 9 C 1.38965 * 119.82054 * 0.30108 * 8 7 6 10 10 O 1.34799 * 133.43092 * 179.71831 * 9 8 7 11 11 C 1.34294 * 126.92930 * 270.83860 * 3 2 1 12 12 C 1.50706 * 124.96646 * 359.39249 * 11 3 2 13 13 H 1.08998 * 109.47200 * 15.66235 * 12 11 3 14 14 N 1.46901 * 109.47000 * 135.66608 * 12 11 3 15 15 C 1.50702 * 109.46846 * 255.66123 * 12 11 3 16 16 H 1.07999 * 119.99608 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99906 * 180.02562 * 15 12 11 18 18 N 1.31510 * 119.99919 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00016 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47300 * 89.99703 * 19 17 15 21 21 H 1.48501 * 109.47379 * 209.99868 * 19 17 15 22 22 H 1.48500 * 109.47315 * 329.99922 * 19 17 15 23 23 H 1.08998 * 109.46661 * 300.00180 * 1 2 3 24 24 H 1.08996 * 109.46840 * 60.00002 * 1 2 3 25 25 H 1.08999 * 109.46837 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.13654 * 0.02562 * 5 4 3 27 27 H 1.07990 * 119.79655 * 179.97438 * 6 5 4 28 28 H 1.08000 * 119.65381 * 180.02562 * 7 6 5 29 29 H 1.08002 * 120.08605 * 180.02562 * 8 7 6 30 30 H 1.00907 * 110.99890 * 296.04073 * 14 12 11 31 31 H 1.00903 * 111.00182 * 59.99383 * 14 12 11 32 32 H 0.97002 * 120.00235 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 2.4487 1.9999 1.1749 5 6 2.3526 1.8110 2.5524 6 6 2.8387 2.7649 3.4031 7 6 3.4267 3.9180 2.9032 8 6 3.5306 4.1222 1.5440 9 6 3.0368 3.1684 0.6622 10 8 2.9876 3.0867 -0.6824 11 6 2.3996 1.9393 -1.0734 12 6 2.1800 1.5257 -2.5058 13 1 1.4612 0.7070 -2.5415 14 7 1.6606 2.6671 -3.2710 15 6 3.4871 1.0730 -3.1039 16 1 4.3866 1.0834 -2.5064 17 6 3.5344 0.6456 -4.4139 18 7 2.4391 0.6335 -5.1416 19 14 5.1544 0.0839 -5.1551 20 1 5.3207 -1.3750 -4.9335 21 1 5.1563 0.3665 -6.6129 22 1 6.2743 0.8135 -4.5080 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8962 0.9150 2.9463 27 1 2.7644 2.6199 4.4707 28 1 3.8069 4.6632 3.5862 29 1 3.9904 5.0231 1.1654 30 1 0.7536 2.9485 -2.9298 31 1 2.3094 3.4397 -3.2531 32 1 2.4723 0.3324 -6.0631 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260989824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:50 Heat of formation + Delta-G solvation = -4.414312 kcal Electronic energy + Delta-G solvation = -17740.051626 eV Core-core repulsion = 14860.628582 eV Total energy + Delta-G solvation = -2879.423044 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.99521 -37.71503 -37.59697 -34.54228 -31.75437 -31.39386 -30.06258 -28.62876 -26.63474 -25.89504 -23.24114 -22.45338 -20.93597 -20.23605 -17.58539 -17.00664 -16.44928 -15.64283 -15.36064 -14.98433 -14.55170 -14.48394 -14.39763 -14.12080 -13.60938 -13.38844 -12.55700 -12.41316 -12.02063 -11.85856 -11.49654 -11.36480 -10.87788 -10.86778 -10.77436 -10.11032 -9.59258 -9.49665 -9.24991 -8.50969 -8.33747 -7.59952 -7.29981 -5.97616 -4.13313 1.22227 1.58804 2.66723 3.18413 3.32734 3.38720 3.43505 3.89568 4.22032 4.44164 4.83545 5.07543 5.11894 5.27638 5.44780 5.50060 5.61052 5.62973 5.70228 5.87314 5.94622 6.05309 6.16301 6.45337 6.52644 6.59134 6.65900 6.82861 7.11880 7.63915 7.81329 7.92980 8.02880 8.43978 8.82540 8.96917 9.55137 11.06725 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.007064 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.372614 B = 3963.018714 C = 4375.928028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.291 6.291 3 C -0.044 4.044 4 C -0.131 4.131 5 C -0.074 4.074 6 C -0.142 4.142 7 C -0.109 4.109 8 C -0.104 4.104 9 C 0.044 3.956 10 O -0.178 6.178 11 C 0.056 3.944 12 C 0.293 3.707 13 H 0.077 0.923 14 N -0.806 5.806 15 C -0.536 4.536 16 H 0.057 0.943 17 C 0.087 3.913 18 N -0.846 5.846 19 Si 0.893 3.107 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.037 0.963 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.301 0.699 31 H 0.327 0.673 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 4.239 13.126 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.206 6.206 3 C -0.090 4.090 4 C -0.133 4.133 5 C -0.092 4.092 6 C -0.160 4.160 7 C -0.127 4.127 8 C -0.122 4.122 9 C -0.004 4.004 10 O -0.079 6.079 11 C 0.005 3.995 12 C 0.183 3.817 13 H 0.094 0.906 14 N -0.331 5.331 15 C -0.574 4.574 16 H 0.076 0.924 17 C -0.121 4.121 18 N -0.480 5.480 19 Si 0.720 3.280 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.397 3.736 12.094 12.883 hybrid contribution 0.685 0.207 0.688 0.993 sum -1.712 3.943 12.782 13.485 Atomic orbital electron populations 1.23025 0.80858 1.02612 1.00170 1.86191 1.18726 1.22205 1.93487 1.18910 1.09430 0.91018 0.89678 1.20185 1.03153 0.95404 0.94522 1.20205 0.99206 0.99092 0.90700 1.20673 1.01217 0.94693 0.99435 1.20793 1.00285 0.97994 0.93641 1.19898 1.02791 0.98281 0.91269 1.19583 1.01799 0.96558 0.82428 1.84166 1.66091 1.37831 1.19808 1.25749 0.90951 0.82139 1.00696 1.18317 0.97751 0.90540 0.75069 0.90559 1.59113 1.04405 1.10254 1.59284 1.20730 0.92779 1.46557 0.97376 0.92442 1.24894 0.96272 0.94260 0.96676 1.70081 1.26713 1.43191 1.08024 0.86608 0.84041 0.79073 0.78310 1.20505 1.21054 1.19865 0.94476 0.93484 0.89148 0.86058 0.85890 0.85308 0.85316 0.88882 0.86037 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.14 101.05 1.13 1.57 16 2 O -0.29 -5.99 10.33 -20.27 -0.21 -6.20 16 3 C -0.04 -0.95 6.51 -37.43 -0.24 -1.19 16 4 C -0.13 -2.52 6.40 -105.08 -0.67 -3.19 16 5 C -0.07 -1.16 10.05 -39.70 -0.40 -1.56 16 6 C -0.14 -1.84 9.98 -39.93 -0.40 -2.24 16 7 C -0.11 -1.38 10.01 -39.53 -0.40 -1.78 16 8 C -0.10 -1.57 10.07 -39.46 -0.40 -1.97 16 9 C 0.04 0.84 7.41 -38.46 -0.29 0.55 16 10 O -0.18 -3.86 10.49 3.15 0.03 -3.82 16 11 C 0.06 1.29 6.00 -35.70 -0.21 1.07 16 12 C 0.29 7.37 3.05 -70.01 -0.21 7.15 16 13 H 0.08 2.06 7.90 -51.93 -0.41 1.65 16 14 N -0.81 -18.84 8.52 -6.65 -0.06 -18.90 16 15 C -0.54 -14.98 8.71 -34.44 -0.30 -15.28 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 17 C 0.09 2.41 5.39 -17.82 -0.10 2.31 16 18 N -0.85 -24.20 12.77 55.43 0.71 -23.49 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.30 6.19 9.06 -39.29 -0.36 5.84 16 31 H 0.33 7.47 8.89 -39.29 -0.35 7.12 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 286.25 15.07 4.31 4.31 Total: -1.00 -30.85 286.25 -6.34 -37.19 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.62 Total: 9.02 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -2.49 Total: -14.54 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.65 Total: -42.39 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.18 Total: -10.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.85 -6.34 -37.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.776 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds