Wall clock time and date at job start Mon Mar 30 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36166 * 116.99891 * 2 1 4 4 C 1.46983 * 126.93294 * 90.02768 * 3 2 1 5 5 C 1.39374 * 134.32073 * 359.97056 * 4 3 2 6 6 C 1.36737 * 119.72640 * 180.02562 * 5 4 3 7 7 C 1.38763 * 120.40897 * 359.97438 * 6 5 4 8 8 C 1.37837 * 120.68410 * 0.02562 * 7 6 5 9 9 C 1.38965 * 119.82054 * 0.30108 * 8 7 6 10 10 O 1.34799 * 133.43092 * 179.71831 * 9 8 7 11 11 C 1.34294 * 126.92930 * 270.83860 * 3 2 1 12 12 C 1.50706 * 124.96646 * 359.39249 * 11 3 2 13 13 H 1.08998 * 109.47200 * 15.66235 * 12 11 3 14 14 N 1.46901 * 109.47000 * 135.66608 * 12 11 3 15 15 C 1.50702 * 109.46846 * 255.66123 * 12 11 3 16 16 H 1.07999 * 119.99608 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99906 * 180.02562 * 15 12 11 18 18 N 1.31510 * 119.99919 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00016 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47300 * 89.99703 * 19 17 15 21 21 H 1.48501 * 109.47379 * 209.99868 * 19 17 15 22 22 H 1.48500 * 109.47315 * 329.99922 * 19 17 15 23 23 H 1.08998 * 109.46661 * 300.00180 * 1 2 3 24 24 H 1.08996 * 109.46840 * 60.00002 * 1 2 3 25 25 H 1.08999 * 109.46837 * 180.02562 * 1 2 3 26 26 H 1.08002 * 120.13654 * 0.02562 * 5 4 3 27 27 H 1.07990 * 119.79655 * 179.97438 * 6 5 4 28 28 H 1.08000 * 119.65381 * 180.02562 * 7 6 5 29 29 H 1.08002 * 120.08605 * 180.02562 * 8 7 6 30 30 H 1.00907 * 110.99890 * 296.04073 * 14 12 11 31 31 H 1.00903 * 111.00182 * 59.99383 * 14 12 11 32 32 H 0.97002 * 120.00235 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0472 1.2133 0.0000 4 6 2.4487 1.9999 1.1749 5 6 2.3526 1.8110 2.5524 6 6 2.8387 2.7649 3.4031 7 6 3.4267 3.9180 2.9032 8 6 3.5306 4.1222 1.5440 9 6 3.0368 3.1684 0.6622 10 8 2.9876 3.0867 -0.6824 11 6 2.3996 1.9393 -1.0734 12 6 2.1800 1.5257 -2.5058 13 1 1.4612 0.7070 -2.5415 14 7 1.6606 2.6671 -3.2710 15 6 3.4871 1.0730 -3.1039 16 1 4.3866 1.0834 -2.5064 17 6 3.5344 0.6456 -4.4139 18 7 2.4391 0.6335 -5.1416 19 14 5.1544 0.0839 -5.1551 20 1 5.3207 -1.3750 -4.9335 21 1 5.1563 0.3665 -6.6129 22 1 6.2743 0.8135 -4.5080 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8962 0.9150 2.9463 27 1 2.7644 2.6199 4.4707 28 1 3.8069 4.6632 3.5862 29 1 3.9904 5.0231 1.1654 30 1 0.7536 2.9485 -2.9298 31 1 2.3094 3.4397 -3.2531 32 1 2.4723 0.3324 -6.0631 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260989824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:49 Heat of formation + Delta-G solvation = -26.148371 kcal Electronic energy + Delta-G solvation = -17740.994086 eV Core-core repulsion = 14860.628582 eV Total energy + Delta-G solvation = -2880.365504 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.44807 -39.18025 -38.88291 -36.45395 -33.64567 -32.90068 -31.29562 -30.10948 -28.24357 -27.65178 -24.84456 -23.79875 -22.38094 -21.81402 -18.98285 -18.79557 -18.01562 -17.26227 -16.92898 -16.44507 -16.35343 -16.00274 -15.78712 -15.67530 -15.01554 -14.69965 -14.48575 -13.81734 -13.49911 -13.25476 -12.95240 -12.79271 -12.71412 -12.69769 -12.09932 -12.03028 -11.50540 -10.96237 -10.77080 -10.63087 -9.60490 -9.28024 -8.93379 -8.08712 -6.32234 -0.05284 0.36857 1.16238 1.41245 1.41579 1.52095 1.73350 2.42240 2.67874 2.81540 3.15279 3.48500 3.86992 4.05415 4.17075 4.23879 4.32659 4.41639 4.43104 4.46566 4.59762 4.64480 4.84850 5.07437 5.11019 5.29059 5.38608 5.48787 5.63240 5.77999 5.93648 6.16383 6.44719 6.51298 6.86750 7.04188 7.39544 8.94701 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.007064 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.372614 B = 3963.018714 C = 4375.928028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C -0.041 4.041 4 C -0.162 4.162 5 C -0.084 4.084 6 C -0.127 4.127 7 C -0.086 4.086 8 C -0.115 4.115 9 C 0.016 3.984 10 O -0.196 6.196 11 C 0.016 3.984 12 C 0.303 3.697 13 H 0.047 0.953 14 N -0.811 5.811 15 C -0.557 4.557 16 H 0.039 0.961 17 C 0.043 3.957 18 N -0.873 5.873 19 Si 0.955 3.045 20 H -0.273 1.273 21 H -0.275 1.275 22 H -0.275 1.275 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.118 0.882 26 H 0.135 0.865 27 H 0.168 0.832 28 H 0.178 0.822 29 H 0.150 0.850 30 H 0.315 0.685 31 H 0.329 0.671 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 5.037 15.909 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C -0.087 4.087 4 C -0.163 4.163 5 C -0.102 4.102 6 C -0.145 4.145 7 C -0.103 4.103 8 C -0.133 4.133 9 C -0.030 4.030 10 O -0.098 6.098 11 C -0.035 4.035 12 C 0.193 3.807 13 H 0.065 0.935 14 N -0.337 5.337 15 C -0.595 4.595 16 H 0.058 0.942 17 C -0.162 4.162 18 N -0.508 5.508 19 Si 0.780 3.220 20 H -0.199 1.199 21 H -0.200 1.200 22 H -0.199 1.199 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.136 0.864 26 H 0.153 0.847 27 H 0.185 0.815 28 H 0.195 0.805 29 H 0.167 0.833 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.748 4.534 14.890 15.663 hybrid contribution 0.447 0.008 0.074 0.453 sum -1.302 4.542 14.964 15.692 Atomic orbital electron populations 1.23235 0.78344 1.04612 1.00568 1.86086 1.21192 1.22372 1.93730 1.19246 1.08239 0.90511 0.90711 1.20339 1.05031 0.95391 0.95545 1.20537 0.99618 1.00632 0.89372 1.21231 0.98605 0.93386 1.01259 1.21436 0.97495 0.98417 0.92990 1.20399 1.02744 0.98286 0.91917 1.20255 1.03135 0.98106 0.81537 1.84054 1.66721 1.37346 1.21697 1.25028 0.94543 0.83979 0.99955 1.17734 0.95803 0.90191 0.76996 0.93529 1.58956 1.05176 1.09910 1.59623 1.20958 0.93460 1.47226 0.97877 0.94221 1.25616 0.99517 0.94202 0.96910 1.70179 1.28444 1.43866 1.08273 0.85641 0.79980 0.78669 0.77755 1.19888 1.19984 1.19940 0.92461 0.94641 0.86374 0.84719 0.81467 0.80501 0.83276 0.87363 0.85931 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.14 113.37 1.26 2.11 16 2 O -0.32 -13.52 10.33 -95.44 -0.99 -14.51 16 3 C -0.04 -1.82 6.51 23.66 0.15 -1.67 16 4 C -0.16 -6.19 6.40 -20.16 -0.13 -6.32 16 5 C -0.08 -2.41 10.05 22.19 0.22 -2.19 16 6 C -0.13 -2.66 9.98 22.04 0.22 -2.44 16 7 C -0.09 -1.73 10.01 22.30 0.22 -1.51 16 8 C -0.12 -3.18 10.07 22.35 0.23 -2.96 16 9 C 0.02 0.62 7.41 23.00 0.17 0.79 16 10 O -0.20 -8.88 10.49 -11.63 -0.12 -9.00 16 11 C 0.02 0.78 6.00 24.79 0.15 0.93 16 12 C 0.30 16.13 3.05 43.43 0.13 16.26 16 13 H 0.05 2.70 7.90 -2.39 -0.02 2.69 16 14 N -0.81 -39.85 8.52 -174.94 -1.49 -41.34 16 15 C -0.56 -32.60 8.71 25.60 0.22 -32.38 16 16 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 17 C 0.04 2.43 5.39 84.65 0.46 2.88 16 18 N -0.87 -51.26 12.77 21.45 0.27 -50.98 16 19 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 26 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 27 H 0.17 2.10 8.06 -2.92 -0.02 2.07 16 28 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 29 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.31 13.67 9.06 -89.69 -0.81 12.86 16 31 H 0.33 15.77 8.89 -89.69 -0.80 14.97 16 32 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -70.41 286.25 2.56 -67.85 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.45 Total: 27.50 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 3.31 Total: -26.49 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -1.22 Total: -92.32 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.11 Total: -23.51 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.41 2.56 -67.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.706 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds