Wall clock time and date at job start Mon Mar 30 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00159 * 2 1 4 4 H 1.48503 * 109.47489 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47170 * 300.00379 * 3 2 1 6 6 H 1.48505 * 109.47116 * 60.00364 * 3 2 1 7 7 C 1.37879 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00020 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99581 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46780 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.47614 * 305.00137 * 10 9 7 12 12 N 1.46904 * 109.47022 * 65.00538 * 10 9 7 13 13 C 1.50699 * 109.46824 * 185.00113 * 10 9 7 14 14 C 1.38049 * 120.06100 * 264.99823 * 13 10 9 15 15 C 1.38505 * 120.29140 * 179.97438 * 14 13 10 16 16 C 1.38303 * 119.93439 * 359.97438 * 15 14 13 17 17 C 1.38369 * 119.91080 * 0.02562 * 16 15 14 18 18 C 1.38645 * 120.16649 * 359.97438 * 17 16 15 19 19 O 1.35897 * 120.08551 * 179.97438 * 18 17 16 20 20 C 1.51379 * 109.74424 * 179.97438 * 16 15 14 21 21 C 1.54342 * 105.17958 * 17.18967 * 20 16 15 22 22 C 1.51387 * 130.32693 * 179.68772 * 15 14 13 23 23 H 0.96999 * 120.00027 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47260 * 60.00802 * 9 7 2 25 25 H 1.08998 * 109.47500 * 300.00030 * 9 7 2 26 26 H 1.00900 * 111.00275 * 59.99774 * 12 10 9 27 27 H 1.00903 * 110.99700 * 183.95273 * 12 10 9 28 28 H 1.08003 * 119.85703 * 0.02562 * 14 13 10 29 29 H 1.07996 * 119.91718 * 179.97438 * 17 16 15 30 30 H 0.96704 * 114.00361 * 270.01677 * 19 18 17 31 31 H 1.09007 * 110.30338 * 136.11609 * 20 16 15 32 32 H 1.09002 * 110.30270 * 258.16566 * 20 16 15 33 33 H 1.08998 * 110.81654 * 91.85694 * 21 20 16 34 34 H 1.08996 * 110.82250 * 215.20798 * 21 20 16 35 35 H 1.09002 * 110.30184 * 281.72871 * 22 15 14 36 36 H 1.08995 * 110.30805 * 43.88160 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9288 -3.5549 -0.8440 12 7 3.0093 -3.6545 1.2529 13 6 1.4958 -4.9636 -0.1257 14 6 1.1640 -5.6809 1.0062 15 6 0.4748 -6.8774 0.8979 16 6 0.1160 -7.3568 -0.3488 17 6 0.4471 -6.6401 -1.4851 18 6 1.1371 -5.4424 -1.3770 19 8 1.4619 -4.7401 -2.4942 20 6 -0.6215 -8.6703 -0.1988 21 6 -1.0569 -8.7226 1.2810 22 6 0.0070 -7.8390 1.9695 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.3976 -3.7527 2.0493 27 1 3.7170 -4.3737 1.2496 28 1 1.4424 -5.3071 1.9805 29 1 0.1674 -7.0146 -2.4587 30 1 2.3220 -4.9737 -2.8695 31 1 -1.4947 -8.6904 -0.8509 32 1 0.0411 -9.5045 -0.4293 33 1 -2.0545 -8.3017 1.4064 34 1 -1.0184 -9.7437 1.6604 35 1 0.8393 -8.4500 2.3188 36 1 -0.4367 -7.2918 2.8012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260989859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:10 Heat of formation + Delta-G solvation = -31.168969 kcal Electronic energy + Delta-G solvation = -17720.138837 eV Core-core repulsion = 14975.388719 eV Total energy + Delta-G solvation = -2744.750119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24225 -37.71849 -35.90876 -33.65422 -32.30290 -30.69186 -28.62252 -27.80509 -26.87442 -24.23322 -22.39329 -21.15378 -20.78372 -19.26232 -17.66490 -16.31749 -16.03293 -15.62471 -15.19796 -14.92543 -14.54057 -14.25713 -13.63921 -13.35784 -12.95535 -12.68278 -12.30850 -12.09096 -11.91311 -11.57131 -11.27503 -11.22025 -11.06604 -10.88675 -10.65805 -10.42770 -10.17790 -10.09733 -9.51064 -8.99098 -8.44099 -8.23221 -7.95389 -7.87932 -5.83940 -3.82468 1.49330 1.58532 3.41564 3.48339 3.54176 3.82364 4.31013 4.55428 4.60311 4.69088 4.91760 5.13816 5.19251 5.31248 5.38665 5.52782 5.58570 5.62145 5.65043 5.72763 5.77339 5.91195 6.07397 6.17359 6.20347 6.36523 6.55110 6.70478 6.78798 6.98016 7.09016 7.65986 7.78082 8.02260 8.05975 8.15658 8.20812 8.60337 9.23636 9.78712 11.28051 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034383 B = 0.005366 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.148706 B = 5216.718270 C = 5418.199490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.049 3.951 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.490 4.490 8 H 0.062 0.938 9 C 0.041 3.959 10 C 0.140 3.860 11 H 0.079 0.921 12 N -0.823 5.823 13 C -0.119 4.119 14 C -0.100 4.100 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.133 4.133 18 C 0.110 3.890 19 O -0.484 6.484 20 C -0.078 4.078 21 C -0.120 4.120 22 C -0.079 4.079 23 H 0.257 0.743 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.334 0.666 27 H 0.321 0.679 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.382 0.618 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 -18.681 0.761 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.150 4.150 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.529 4.529 8 H 0.080 0.920 9 C 0.003 3.997 10 C 0.028 3.972 11 H 0.097 0.903 12 N -0.350 5.350 13 C -0.122 4.122 14 C -0.118 4.118 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.152 4.152 18 C 0.065 3.935 19 O -0.293 6.293 20 C -0.115 4.115 21 C -0.158 4.158 22 C -0.116 4.116 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.031 0.969 26 H 0.148 0.852 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.237 0.763 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.689 -17.525 0.651 17.551 hybrid contribution 0.372 -0.162 -0.040 0.407 sum 1.061 -17.687 0.611 17.729 Atomic orbital electron populations 1.69993 1.06024 1.26123 1.52192 1.25024 0.94785 0.99134 0.96047 0.86537 0.80180 0.84017 0.77237 1.19753 1.21365 1.21326 1.21192 0.93311 0.90086 1.48318 0.91999 1.19099 0.92801 0.90416 0.97351 1.20664 0.94720 0.89961 0.91854 0.90289 1.58859 1.17859 1.54095 1.04214 1.21634 0.99469 0.98774 0.92303 1.20319 0.99380 0.93896 0.98219 1.20495 0.99388 0.95446 0.95272 1.20278 1.00177 0.96754 0.93018 1.20797 1.01719 0.94505 0.98171 1.18109 0.98759 0.90473 0.86138 1.84944 1.40646 1.63070 1.40681 1.20985 0.99127 0.94234 0.97122 1.22306 0.98983 0.99791 0.94672 1.21024 0.98204 0.95759 0.96657 0.93375 0.95672 0.96917 0.85223 0.86857 0.86251 0.86148 0.76292 0.90996 0.90620 0.90950 0.90806 0.90564 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.24 13.29 55.43 0.74 -27.51 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.49 -14.28 8.84 -34.44 -0.30 -14.59 16 8 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 9 C 0.04 1.09 4.60 -27.88 -0.13 0.96 16 10 C 0.14 2.92 2.65 -68.86 -0.18 2.74 16 11 H 0.08 1.67 7.70 -51.93 -0.40 1.27 16 12 N -0.82 -15.43 8.54 -5.65 -0.05 -15.47 16 13 C -0.12 -2.19 5.06 -104.52 -0.53 -2.72 16 14 C -0.10 -1.64 9.27 -39.55 -0.37 -2.00 16 15 C -0.11 -1.54 6.14 -104.16 -0.64 -2.18 16 16 C -0.10 -1.45 6.13 -104.22 -0.64 -2.09 16 17 C -0.13 -2.05 9.98 -39.38 -0.39 -2.44 16 18 C 0.11 1.94 6.67 -39.26 -0.26 1.68 16 19 O -0.48 -8.33 12.65 -19.42 -0.25 -8.58 16 20 C -0.08 -0.82 6.77 -26.85 -0.18 -1.00 16 21 C -0.12 -1.14 7.09 -25.25 -0.18 -1.32 16 22 C -0.08 -0.88 6.78 -26.77 -0.18 -1.06 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.33 6.01 7.21 -39.29 -0.28 5.73 16 27 H 0.32 4.99 9.06 -39.29 -0.36 4.64 16 28 H 0.12 1.82 6.28 -52.48 -0.33 1.49 16 29 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.38 4.51 9.06 45.56 0.41 4.92 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -33.91 299.32 -8.45 -42.36 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.30 Total: 9.76 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -4.08 Total: -22.66 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.69 Total: -42.98 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.25 Total: -8.58 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.91 -8.45 -42.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.189 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds