Wall clock time and date at job start Mon Mar 30 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00159 * 2 1 4 4 H 1.48503 * 109.47489 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47170 * 300.00379 * 3 2 1 6 6 H 1.48505 * 109.47116 * 60.00364 * 3 2 1 7 7 C 1.37879 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00020 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99581 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46780 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.47614 * 305.00137 * 10 9 7 12 12 N 1.46904 * 109.47022 * 65.00538 * 10 9 7 13 13 C 1.50699 * 109.46824 * 185.00113 * 10 9 7 14 14 C 1.38049 * 120.06100 * 264.99823 * 13 10 9 15 15 C 1.38505 * 120.29140 * 179.97438 * 14 13 10 16 16 C 1.38303 * 119.93439 * 359.97438 * 15 14 13 17 17 C 1.38369 * 119.91080 * 0.02562 * 16 15 14 18 18 C 1.38645 * 120.16649 * 359.97438 * 17 16 15 19 19 O 1.35897 * 120.08551 * 179.97438 * 18 17 16 20 20 C 1.51379 * 109.74424 * 179.97438 * 16 15 14 21 21 C 1.54342 * 105.17958 * 17.18967 * 20 16 15 22 22 C 1.51387 * 130.32693 * 179.68772 * 15 14 13 23 23 H 0.96999 * 120.00027 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47260 * 60.00802 * 9 7 2 25 25 H 1.08998 * 109.47500 * 300.00030 * 9 7 2 26 26 H 1.00900 * 111.00275 * 59.99774 * 12 10 9 27 27 H 1.00903 * 110.99700 * 183.95273 * 12 10 9 28 28 H 1.08003 * 119.85703 * 0.02562 * 14 13 10 29 29 H 1.07996 * 119.91718 * 179.97438 * 17 16 15 30 30 H 0.96704 * 114.00361 * 270.01677 * 19 18 17 31 31 H 1.09007 * 110.30338 * 136.11609 * 20 16 15 32 32 H 1.09002 * 110.30270 * 258.16566 * 20 16 15 33 33 H 1.08998 * 110.81654 * 91.85694 * 21 20 16 34 34 H 1.08996 * 110.82250 * 215.20798 * 21 20 16 35 35 H 1.09002 * 110.30184 * 281.72871 * 22 15 14 36 36 H 1.08995 * 110.30805 * 43.88160 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9288 -3.5549 -0.8440 12 7 3.0093 -3.6545 1.2529 13 6 1.4958 -4.9636 -0.1257 14 6 1.1640 -5.6809 1.0062 15 6 0.4748 -6.8774 0.8979 16 6 0.1160 -7.3568 -0.3488 17 6 0.4471 -6.6401 -1.4851 18 6 1.1371 -5.4424 -1.3770 19 8 1.4619 -4.7401 -2.4942 20 6 -0.6215 -8.6703 -0.1988 21 6 -1.0569 -8.7226 1.2810 22 6 0.0070 -7.8390 1.9695 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.3976 -3.7527 2.0493 27 1 3.7170 -4.3737 1.2496 28 1 1.4424 -5.3071 1.9805 29 1 0.1674 -7.0146 -2.4587 30 1 2.3220 -4.9737 -2.8695 31 1 -1.4947 -8.6904 -0.8509 32 1 0.0411 -9.5045 -0.4293 33 1 -2.0545 -8.3017 1.4064 34 1 -1.0184 -9.7437 1.6604 35 1 0.8393 -8.4500 2.3188 36 1 -0.4367 -7.2918 2.8012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260989859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:09 Heat of formation + Delta-G solvation = -55.523580 kcal Electronic energy + Delta-G solvation = -17721.194932 eV Core-core repulsion = 14975.388719 eV Total energy + Delta-G solvation = -2745.806214 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43408 -38.89273 -37.44723 -35.13664 -34.22133 -31.87863 -30.36711 -29.30886 -27.88368 -26.04836 -23.86770 -22.62360 -21.69536 -20.75905 -19.01901 -18.32161 -17.40972 -16.75706 -16.58500 -16.28887 -16.20095 -15.80897 -15.00547 -14.69317 -14.27506 -14.17268 -13.70923 -13.34182 -13.20518 -13.04749 -12.88476 -12.58067 -12.45238 -12.41780 -12.05790 -12.02323 -11.81314 -11.36512 -11.28491 -11.17328 -10.54129 -9.71449 -9.47135 -9.14485 -8.12848 -6.20297 0.27864 0.34303 1.40749 1.41495 1.55748 2.45231 2.62015 3.19623 3.21655 3.55675 3.67370 3.85676 3.94481 4.15759 4.20532 4.32403 4.38242 4.54933 4.66707 4.76495 4.86959 4.92280 4.94008 5.05263 5.14752 5.24033 5.30643 5.40077 5.46071 5.47327 5.62162 5.69584 5.85329 5.93111 6.27474 6.45978 6.78093 6.89128 6.94430 7.46381 8.99737 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034383 B = 0.005366 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.148706 B = 5216.718270 C = 5418.199490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.009 4.009 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.052 3.948 10 C 0.157 3.843 11 H 0.071 0.929 12 N -0.828 5.828 13 C -0.148 4.148 14 C -0.108 4.108 15 C -0.115 4.115 16 C -0.100 4.100 17 C -0.141 4.141 18 C 0.094 3.906 19 O -0.506 6.506 20 C -0.077 4.077 21 C -0.115 4.115 22 C -0.080 4.080 23 H 0.260 0.740 24 H -0.015 1.015 25 H -0.018 1.018 26 H 0.338 0.662 27 H 0.341 0.659 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.401 0.599 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -20.452 1.337 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.205 4.205 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.015 3.985 10 C 0.045 3.955 11 H 0.089 0.911 12 N -0.357 5.357 13 C -0.151 4.151 14 C -0.126 4.126 15 C -0.115 4.115 16 C -0.101 4.101 17 C -0.160 4.160 18 C 0.049 3.951 19 O -0.318 6.318 20 C -0.113 4.113 21 C -0.152 4.152 22 C -0.116 4.116 23 H 0.068 0.932 24 H 0.003 0.997 25 H 0.000 1.000 26 H 0.152 0.848 27 H 0.155 0.845 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.259 0.741 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.185 -19.323 1.224 19.398 hybrid contribution 0.196 0.307 -0.229 0.430 sum 1.381 -19.016 0.995 19.092 Atomic orbital electron populations 1.70139 1.07869 1.27282 1.53167 1.25986 0.95690 1.03322 0.95499 0.85378 0.79109 0.78915 0.77472 1.18595 1.20697 1.20598 1.21525 0.93436 0.91322 1.47990 0.91963 1.18843 0.93122 0.92700 0.93845 1.20086 0.93494 0.89351 0.92545 0.91099 1.58717 1.18220 1.55367 1.03433 1.21399 1.01563 0.98431 0.93722 1.20458 0.99720 0.94704 0.97744 1.20974 0.98310 0.95098 0.97086 1.20848 0.98938 0.97954 0.92322 1.21011 1.01348 0.93905 0.99723 1.18356 0.99530 0.91434 0.85825 1.84876 1.42259 1.63827 1.40825 1.21123 0.99447 0.92546 0.98228 1.22355 0.98163 1.01120 0.93560 1.21153 0.99371 0.95391 0.95727 0.93174 0.99698 0.99967 0.84820 0.84534 0.85732 0.84347 0.74081 0.90004 0.88429 0.91135 0.87776 0.88608 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.69 13.29 21.45 0.28 -60.40 16 2 C -0.01 -0.55 5.46 84.66 0.46 -0.09 16 3 Si 0.97 46.94 29.54 68.60 2.03 48.96 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.50 -30.19 8.84 25.60 0.23 -29.96 16 8 H 0.06 3.65 7.74 -2.91 -0.02 3.62 16 9 C 0.05 2.95 4.60 29.85 0.14 3.09 16 10 C 0.16 6.82 2.65 44.17 0.12 6.94 16 11 H 0.07 3.12 7.70 -2.39 -0.02 3.11 16 12 N -0.83 -31.39 8.54 -171.80 -1.47 -32.85 16 13 C -0.15 -5.63 5.06 -19.80 -0.10 -5.73 16 14 C -0.11 -3.55 9.27 22.29 0.21 -3.34 16 15 C -0.11 -3.17 6.14 -19.57 -0.12 -3.29 16 16 C -0.10 -2.66 6.13 -19.60 -0.12 -2.79 16 17 C -0.14 -4.25 9.98 22.40 0.22 -4.03 16 18 C 0.09 3.36 6.67 22.48 0.15 3.51 16 19 O -0.51 -18.07 12.65 -92.39 -1.17 -19.24 16 20 C -0.08 -1.35 6.77 30.52 0.21 -1.14 16 21 C -0.11 -1.74 7.09 31.55 0.22 -1.52 16 22 C -0.08 -1.52 6.78 30.57 0.21 -1.32 16 23 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 25 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 26 H 0.34 12.36 7.21 -89.69 -0.65 11.71 16 27 H 0.34 10.51 9.06 -89.69 -0.81 9.69 16 28 H 0.12 3.81 6.28 -2.91 -0.02 3.79 16 29 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.40 9.85 9.06 -74.05 -0.67 9.18 16 31 H 0.08 1.32 8.14 -2.38 -0.02 1.31 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -75.23 299.32 0.48 -74.75 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -1.02 Total: 28.45 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 1.82 Total: -39.67 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -1.18 Total: -93.26 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -1.17 Total: -19.24 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -75.23 0.48 -74.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.226 kcal (2) G-P(sol) polarization free energy of solvation -75.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds