Wall clock time and date at job start Mon Mar 30 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48497 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47205 * 300.00210 * 3 2 1 6 6 H 1.48507 * 109.46836 * 59.99919 * 3 2 1 7 7 C 1.37880 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99589 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46864 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.46834 * 305.00065 * 10 9 7 12 12 N 1.46904 * 109.47220 * 64.99495 * 10 9 7 13 13 C 1.50700 * 109.47004 * 184.99741 * 10 9 7 14 14 C 1.38121 * 119.86254 * 265.01819 * 13 10 9 15 15 C 1.38212 * 119.85868 * 180.02562 * 14 13 10 16 16 C 1.38089 * 119.90187 * 0.10695 * 15 14 13 17 17 C 1.38606 * 120.29928 * 359.95172 * 16 15 14 18 18 C 1.37941 * 119.77698 * 359.86063 * 17 16 15 19 19 C 1.50738 * 121.34619 * 180.54256 * 18 17 16 20 20 C 1.52970 * 109.75081 * 342.87614 * 19 18 17 21 21 O 1.43215 * 108.47407 * 49.26739 * 20 19 18 22 22 C 1.42713 * 113.15327 * 289.32366 * 21 20 19 23 23 H 0.97002 * 120.00051 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.47495 * 59.99881 * 9 7 2 25 25 H 1.09003 * 109.46791 * 299.99475 * 9 7 2 26 26 H 1.00893 * 111.00167 * 296.05137 * 12 10 9 27 27 H 1.00903 * 110.99921 * 59.99944 * 12 10 9 28 28 H 1.07998 * 120.06735 * 359.97438 * 14 13 10 29 29 H 1.08007 * 120.04469 * 180.02562 * 15 14 13 30 30 H 1.07998 * 119.85150 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.42621 * 222.79148 * 19 18 17 32 32 H 1.08996 * 109.42774 * 102.96283 * 19 18 17 33 33 H 1.09000 * 109.63737 * 289.57431 * 20 19 18 34 34 H 1.09004 * 109.63998 * 168.96180 * 20 19 18 35 35 H 1.09004 * 109.33956 * 171.96821 * 22 21 20 36 36 H 1.09003 * 109.34135 * 291.64546 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0027 11 1 2.9295 -3.5544 -0.8444 12 7 3.0086 -3.6549 1.2525 13 6 1.4960 -4.9636 -0.1277 14 6 1.1650 -5.6782 1.0070 15 6 0.4782 -6.8721 0.8923 16 6 0.1274 -7.3473 -0.3559 17 6 0.4600 -6.6317 -1.4954 18 6 1.1420 -5.4383 -1.3802 19 6 1.5109 -4.6255 -2.5949 20 6 1.4143 -5.4966 -3.8486 21 8 0.1499 -6.1691 -3.8377 22 6 0.0634 -7.1853 -2.8394 23 1 -0.4850 0.8401 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6242 -2.5575 0.8881 26 1 3.5702 -2.8203 1.3294 27 1 2.3964 -3.7534 2.0485 28 1 1.4430 -5.3053 1.9816 29 1 0.2175 -7.4332 1.7776 30 1 -0.4089 -8.2805 -0.4446 31 1 2.5308 -4.2561 -2.4879 32 1 0.8282 -3.7808 -2.6869 33 1 2.2197 -6.2310 -3.8474 34 1 1.4878 -4.8694 -4.7371 35 1 -0.9604 -7.5559 -2.7892 36 1 0.7319 -8.0057 -3.1006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261028115.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:07 Heat of formation + Delta-G solvation = -35.842865 kcal Electronic energy + Delta-G solvation = -18045.090574 eV Core-core repulsion = 15300.137780 eV Total energy + Delta-G solvation = -2744.952794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13192 -37.60872 -35.45332 -32.73872 -32.37812 -30.94417 -28.97829 -27.99971 -25.29769 -24.51733 -23.59619 -21.89096 -19.91614 -19.25639 -17.03844 -16.41428 -16.16823 -15.55402 -15.17979 -14.65579 -14.57281 -14.19746 -13.54887 -13.38113 -12.88471 -12.70379 -12.52813 -12.26183 -12.11293 -11.78034 -11.53191 -11.27187 -11.05438 -10.82069 -10.57668 -10.37249 -10.12599 -9.95059 -9.49381 -9.13235 -8.50009 -8.25825 -8.22497 -7.67235 -6.10151 -4.15193 1.70138 1.77587 3.24086 3.32489 3.35332 3.96878 4.12435 4.36997 4.89677 4.96810 5.12519 5.23508 5.25532 5.36249 5.39922 5.44657 5.52376 5.56829 5.77584 5.79990 5.98847 6.09127 6.20759 6.27999 6.44869 6.54822 6.70718 6.77135 6.86646 7.11553 7.23423 7.37674 7.45783 7.56844 7.83624 8.02849 8.18015 8.30128 8.91812 9.50199 11.00287 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.006579 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.454666 B = 4254.794457 C = 4861.681420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.003 3.997 10 C 0.123 3.877 11 H 0.079 0.921 12 N -0.841 5.841 13 C -0.048 4.048 14 C -0.106 4.106 15 C -0.125 4.125 16 C -0.130 4.130 17 C -0.127 4.127 18 C -0.068 4.068 19 C -0.117 4.117 20 C 0.061 3.939 21 O -0.378 6.378 22 C 0.106 3.894 23 H 0.261 0.739 24 H 0.022 0.978 25 H 0.016 0.984 26 H 0.346 0.654 27 H 0.329 0.671 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -13.045 -2.875 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.035 4.035 10 C 0.012 3.988 11 H 0.097 0.903 12 N -0.370 5.370 13 C -0.049 4.049 14 C -0.125 4.125 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.127 4.127 18 C -0.069 4.069 19 C -0.154 4.154 20 C -0.016 4.016 21 O -0.297 6.297 22 C 0.030 3.970 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.034 0.966 26 H 0.160 0.840 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.977 -13.534 -3.295 14.070 hybrid contribution -0.065 1.837 0.600 1.933 sum 1.912 -11.697 -2.696 12.155 Atomic orbital electron populations 1.69985 1.06098 1.26660 1.50017 1.25020 0.94810 0.99301 0.95043 0.86543 0.80099 0.83753 0.77651 1.19659 1.20955 1.21026 1.21182 0.92877 0.90775 1.51608 0.92490 1.19758 0.94368 0.91475 0.97941 1.20579 0.94647 0.90810 0.92804 0.90284 1.59309 1.27981 1.45785 1.03940 1.20085 0.96610 0.96125 0.92045 1.20924 0.98157 0.94750 0.98637 1.20978 0.99587 0.96790 0.96938 1.20760 1.02018 0.99855 0.92140 1.20086 1.00698 0.96080 0.95879 1.19238 0.98657 0.94407 0.94596 1.21177 1.03495 0.98716 0.92037 1.22665 0.85469 0.95048 0.98391 1.88036 1.35455 1.51723 1.54447 1.21339 1.01700 0.89597 0.84389 0.92926 0.95999 0.96605 0.84032 0.85944 0.85957 0.86556 0.86687 0.89361 0.88847 0.93038 0.88459 0.88263 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.53 -14.06 8.55 -34.44 -0.29 -14.35 16 8 H 0.06 1.47 7.15 -52.49 -0.38 1.09 16 9 C 0.00 0.07 4.59 -27.88 -0.13 -0.05 16 10 C 0.12 2.50 2.45 -68.86 -0.17 2.33 16 11 H 0.08 1.63 6.28 -51.93 -0.33 1.30 16 12 N -0.84 -15.69 8.79 -5.65 -0.05 -15.74 16 13 C -0.05 -0.91 5.06 -104.55 -0.53 -1.44 16 14 C -0.11 -1.83 9.26 -39.63 -0.37 -2.20 16 15 C -0.12 -1.87 10.05 -39.65 -0.40 -2.27 16 16 C -0.13 -1.87 9.67 -39.50 -0.38 -2.25 16 17 C -0.13 -2.00 5.80 -104.61 -0.61 -2.61 16 18 C -0.07 -1.22 5.77 -104.60 -0.60 -1.82 16 19 C -0.12 -1.94 5.14 -27.88 -0.14 -2.09 16 20 C 0.06 0.84 6.85 37.14 0.25 1.09 16 21 O -0.38 -5.78 10.80 -35.23 -0.38 -6.16 16 22 C 0.11 1.42 6.66 35.99 0.24 1.66 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.02 0.59 7.19 -51.93 -0.37 0.22 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.35 6.56 7.90 -39.30 -0.31 6.25 16 27 H 0.33 5.87 7.20 -39.29 -0.28 5.59 16 28 H 0.12 1.98 6.28 -52.49 -0.33 1.65 16 29 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.09 1.41 6.48 -51.93 -0.34 1.08 16 32 H 0.09 1.75 7.37 -51.93 -0.38 1.36 16 33 H 0.05 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 289.94 15.07 4.37 4.37 Total: -1.00 -30.14 289.94 -8.38 -38.52 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.81 Total: 10.84 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -3.23 Total: -22.42 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.69 Total: -41.19 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.38 Total: -6.16 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.14 -8.38 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028115.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.679 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds