Wall clock time and date at job start Mon Mar 30 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35978 * 117.00260 * 2 1 4 4 C 1.39192 * 119.92133 * 0.02562 * 3 2 1 5 5 C 1.37770 * 120.64290 * 180.02562 * 4 3 2 6 6 C 1.38923 * 120.03446 * 359.97438 * 5 4 3 7 7 O 1.34920 * 133.34167 * 180.02562 * 6 5 4 8 8 C 1.34435 * 110.89127 * 179.97438 * 7 6 5 9 9 C 1.33999 * 110.14909 * 359.76309 * 8 7 6 10 10 C 1.50702 * 126.90334 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.46974 * 145.40766 * 10 9 8 12 12 N 1.46894 * 109.47032 * 25.40875 * 10 9 8 13 13 C 1.50698 * 109.47002 * 265.40799 * 10 9 8 14 14 H 1.07994 * 120.00400 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99758 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99740 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00029 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47001 * 60.00010 * 17 15 13 19 19 H 1.48500 * 109.47185 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47126 * 299.99851 * 17 15 13 21 21 C 1.40445 * 119.41032 * 0.02562 * 6 5 4 22 22 C 1.38164 * 119.92419 * 180.02562 * 3 2 1 23 23 H 1.09007 * 109.46660 * 300.00063 * 1 2 3 24 24 H 1.08997 * 109.46852 * 59.99924 * 1 2 3 25 25 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.68119 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.98697 * 180.02562 * 5 4 3 28 28 H 1.07997 * 124.92877 * 179.97438 * 8 7 6 29 29 H 1.00900 * 111.00363 * 176.04690 * 12 10 9 30 30 H 1.00905 * 111.00313 * 300.00105 * 12 10 9 31 31 H 0.97008 * 119.99703 * 179.97438 * 16 15 13 32 32 H 1.07991 * 120.22679 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2867 2.3779 0.0005 5 6 1.8968 3.6132 0.0000 6 6 3.2830 3.7041 -0.0005 7 8 4.1428 4.7439 -0.0007 8 6 5.4162 4.3129 -0.0007 9 6 5.4502 2.9734 0.0046 10 6 6.6778 2.0993 0.0069 11 1 6.4836 1.2017 0.5942 12 7 7.8028 2.8367 0.5972 13 6 7.0197 1.7097 -1.4081 14 1 6.4089 2.0595 -2.2271 15 6 8.1124 0.9064 -1.6571 16 7 8.8558 0.4799 -0.6596 17 14 8.5366 0.4240 -3.4111 18 1 8.8009 1.6471 -4.2107 19 1 9.7463 -0.4374 -3.4088 20 1 7.3996 -0.3218 -4.0082 21 6 4.0513 2.5284 -0.0011 22 6 3.4262 1.2820 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2086 2.3139 0.0005 27 1 1.2970 4.5114 0.0009 28 1 6.2858 4.9534 -0.0012 29 1 8.6212 2.2509 0.6693 30 1 8.0027 3.6739 0.0705 31 1 9.6244 -0.0855 -0.8347 32 1 4.0167 0.3778 -0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261030139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:24 Heat of formation + Delta-G solvation = -11.670843 kcal Electronic energy + Delta-G solvation = -17442.000899 eV Core-core repulsion = 14562.263188 eV Total energy + Delta-G solvation = -2879.737711 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.76582 -39.32920 -36.08112 -35.16533 -32.19736 -30.81337 -29.54497 -28.30174 -26.92057 -26.04850 -23.03406 -22.56853 -21.46863 -19.11502 -17.82027 -16.73301 -16.54355 -16.06441 -15.64923 -15.25477 -15.21726 -14.62295 -13.87605 -13.65754 -13.14542 -12.89303 -12.61686 -12.60325 -12.15967 -12.06667 -11.49810 -11.20290 -10.96175 -10.78113 -10.62324 -10.32242 -10.16867 -9.79600 -9.31131 -8.64249 -7.74350 -7.47079 -7.20248 -6.10188 -4.26476 1.33278 1.80189 3.14650 3.24362 3.29200 3.34023 3.35150 3.53652 4.11735 4.34335 4.93178 5.02924 5.11925 5.14617 5.16358 5.35817 5.45685 5.50000 5.81280 5.85267 6.17378 6.21016 6.50197 6.56835 6.68857 6.80363 6.88785 7.10297 7.55735 7.65850 7.73808 7.84428 8.07324 8.64814 8.89592 9.06164 9.45043 10.87623 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.007115 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.993205 B = 3934.342092 C = 4723.162381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.094 3.906 4 C -0.184 4.184 5 C -0.078 4.078 6 C 0.016 3.984 7 O -0.205 6.205 8 C -0.017 4.017 9 C -0.115 4.115 10 C 0.270 3.730 11 H 0.050 0.950 12 N -0.850 5.850 13 C -0.543 4.543 14 H 0.055 0.945 15 C 0.067 3.933 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.077 4.077 22 C -0.092 4.092 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.203 0.797 29 H 0.359 0.641 30 H 0.309 0.691 31 H 0.267 0.733 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.025 3.191 1.315 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.050 3.950 4 C -0.203 4.203 5 C -0.097 4.097 6 C -0.031 4.031 7 O -0.108 6.108 8 C -0.081 4.081 9 C -0.117 4.117 10 C 0.160 3.840 11 H 0.067 0.933 12 N -0.380 5.380 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.136 4.136 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.079 4.079 22 C -0.110 4.110 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.219 0.781 29 H 0.175 0.825 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.320 3.197 2.026 13.847 hybrid contribution 0.606 -0.520 -1.996 2.150 sum -12.714 2.678 0.030 12.993 Atomic orbital electron populations 1.22977 0.79157 1.03473 1.00964 1.86092 1.20660 1.26800 1.89602 1.18620 0.91808 0.83935 1.00687 1.20818 0.99471 0.91177 1.08809 1.19483 0.89108 0.97678 1.03413 1.19530 0.91712 0.85779 1.06117 1.83942 1.15624 1.33564 1.77665 1.23543 0.83396 0.95306 1.05841 1.21746 0.93698 0.93846 1.02408 1.17374 0.83224 0.89951 0.93451 0.93255 1.59482 1.12412 1.10484 1.55628 1.21773 1.11744 1.31480 0.93253 0.92670 1.25008 0.96084 0.94993 0.97476 1.69727 1.17573 1.35323 1.30711 0.86567 0.77827 0.78563 0.84567 1.20215 1.21141 1.20109 1.19662 0.93576 0.92588 1.02069 1.19743 0.90811 0.97586 1.02886 0.92981 0.92969 0.88633 0.85005 0.85436 0.78075 0.82471 0.88191 0.92347 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.89 10.49 -19.67 -0.21 -5.10 16 3 C 0.09 1.59 6.68 -39.25 -0.26 1.33 16 4 C -0.18 -2.67 9.01 -39.40 -0.36 -3.02 16 5 C -0.08 -1.21 10.05 -39.50 -0.40 -1.61 16 6 C 0.02 0.30 7.41 -38.50 -0.29 0.02 16 7 O -0.21 -3.95 10.59 3.63 0.04 -3.91 16 8 C -0.02 -0.34 11.27 29.24 0.33 -0.01 16 9 C -0.12 -2.59 5.40 -102.65 -0.55 -3.14 16 10 C 0.27 6.78 3.24 -70.02 -0.23 6.55 16 11 H 0.05 1.38 8.14 -51.92 -0.42 0.95 16 12 N -0.85 -19.88 8.96 -6.65 -0.06 -19.94 16 13 C -0.54 -14.67 8.71 -34.44 -0.30 -14.97 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.80 5.38 -17.82 -0.10 1.70 16 16 N -0.89 -24.51 11.54 55.43 0.64 -23.87 16 17 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.08 -1.64 6.38 -105.16 -0.67 -2.31 16 22 C -0.09 -1.83 10.03 -39.16 -0.39 -2.22 16 23 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 24 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.13 1.43 6.26 -52.48 -0.33 1.10 16 27 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.20 3.40 7.34 -52.49 -0.39 3.01 16 29 H 0.36 8.99 7.08 -39.29 -0.28 8.71 16 30 H 0.31 6.69 8.00 -39.29 -0.31 6.38 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.14 2.84 8.06 -52.49 -0.42 2.41 16 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -29.47 278.25 -5.97 -35.44 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -3.33 Total: 13.55 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -2.22 Total: -16.40 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.58 Total: -43.81 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.17 Total: -9.01 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.47 -5.97 -35.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.771 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds