Wall clock time and date at job start Mon Mar 30 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35978 * 117.00260 * 2 1 4 4 C 1.39192 * 119.92133 * 0.02562 * 3 2 1 5 5 C 1.37770 * 120.64290 * 180.02562 * 4 3 2 6 6 C 1.38923 * 120.03446 * 359.97438 * 5 4 3 7 7 O 1.34920 * 133.34167 * 180.02562 * 6 5 4 8 8 C 1.34435 * 110.89127 * 179.97438 * 7 6 5 9 9 C 1.33999 * 110.14909 * 359.76309 * 8 7 6 10 10 C 1.50702 * 126.90334 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.46974 * 145.40766 * 10 9 8 12 12 N 1.46894 * 109.47032 * 25.40875 * 10 9 8 13 13 C 1.50698 * 109.47002 * 265.40799 * 10 9 8 14 14 H 1.07994 * 120.00400 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99758 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99740 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00029 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47001 * 60.00010 * 17 15 13 19 19 H 1.48500 * 109.47185 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47126 * 299.99851 * 17 15 13 21 21 C 1.40445 * 119.41032 * 0.02562 * 6 5 4 22 22 C 1.38164 * 119.92419 * 180.02562 * 3 2 1 23 23 H 1.09007 * 109.46660 * 300.00063 * 1 2 3 24 24 H 1.08997 * 109.46852 * 59.99924 * 1 2 3 25 25 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.68119 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.98697 * 180.02562 * 5 4 3 28 28 H 1.07997 * 124.92877 * 179.97438 * 8 7 6 29 29 H 1.00900 * 111.00363 * 176.04690 * 12 10 9 30 30 H 1.00905 * 111.00313 * 300.00105 * 12 10 9 31 31 H 0.97008 * 119.99703 * 179.97438 * 16 15 13 32 32 H 1.07991 * 120.22679 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2867 2.3779 0.0005 5 6 1.8968 3.6132 0.0000 6 6 3.2830 3.7041 -0.0005 7 8 4.1428 4.7439 -0.0007 8 6 5.4162 4.3129 -0.0007 9 6 5.4502 2.9734 0.0046 10 6 6.6778 2.0993 0.0069 11 1 6.4836 1.2017 0.5942 12 7 7.8028 2.8367 0.5972 13 6 7.0197 1.7097 -1.4081 14 1 6.4089 2.0595 -2.2271 15 6 8.1124 0.9064 -1.6571 16 7 8.8558 0.4799 -0.6596 17 14 8.5366 0.4240 -3.4111 18 1 8.8009 1.6471 -4.2107 19 1 9.7463 -0.4374 -3.4088 20 1 7.3996 -0.3218 -4.0082 21 6 4.0513 2.5284 -0.0011 22 6 3.4262 1.2820 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2086 2.3139 0.0005 27 1 1.2970 4.5114 0.0009 28 1 6.2858 4.9534 -0.0012 29 1 8.6212 2.2509 0.6693 30 1 8.0027 3.6739 0.0705 31 1 9.6244 -0.0855 -0.8347 32 1 4.0167 0.3778 -0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261030139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:23 Heat of formation + Delta-G solvation = -32.106120 kcal Electronic energy + Delta-G solvation = -17442.887039 eV Core-core repulsion = 14562.263188 eV Total energy + Delta-G solvation = -2880.623851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.23806 -40.54603 -37.38089 -37.04971 -34.02997 -32.46554 -30.91535 -29.76735 -28.10228 -27.85977 -24.71669 -24.14546 -22.79508 -20.71096 -19.08677 -18.64562 -18.15520 -17.44487 -16.96192 -16.72454 -16.45632 -16.37321 -15.63799 -15.04980 -14.84413 -14.44089 -14.15038 -13.83273 -13.62523 -13.27566 -13.21839 -12.87055 -12.78069 -12.51877 -12.08525 -11.83760 -11.74255 -11.59559 -10.92405 -10.64367 -9.30105 -9.11738 -8.86407 -8.14302 -6.40910 -0.03569 0.42891 1.35082 1.36710 1.44413 1.61252 1.97229 2.35369 2.39458 2.72490 3.01429 3.69756 3.75205 3.95090 4.19327 4.32105 4.41922 4.47380 4.47874 4.55307 4.75450 4.83051 4.90044 5.07134 5.21403 5.38267 5.41999 5.49867 5.60902 5.74120 6.01137 6.25461 6.49204 6.61169 6.87231 7.08804 7.35519 8.79515 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.007115 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.993205 B = 3934.342092 C = 4723.162381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.340 6.340 3 C 0.107 3.893 4 C -0.169 4.169 5 C -0.061 4.061 6 C -0.005 4.005 7 O -0.199 6.199 8 C 0.003 3.997 9 C -0.162 4.162 10 C 0.280 3.720 11 H 0.004 0.996 12 N -0.840 5.840 13 C -0.559 4.559 14 H 0.042 0.958 15 C 0.024 3.976 16 N -0.915 5.915 17 Si 0.958 3.042 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.279 1.279 21 C -0.106 4.106 22 C -0.137 4.137 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.116 0.884 26 H 0.182 0.818 27 H 0.172 0.828 28 H 0.228 0.772 29 H 0.349 0.651 30 H 0.321 0.679 31 H 0.269 0.731 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.598 4.419 0.610 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.255 6.255 3 C 0.062 3.938 4 C -0.187 4.187 5 C -0.079 4.079 6 C -0.051 4.051 7 O -0.102 6.102 8 C -0.061 4.061 9 C -0.164 4.164 10 C 0.169 3.831 11 H 0.022 0.978 12 N -0.369 5.369 13 C -0.598 4.598 14 H 0.060 0.940 15 C -0.176 4.176 16 N -0.554 5.554 17 Si 0.783 3.217 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.108 4.108 22 C -0.156 4.156 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.199 0.801 27 H 0.189 0.811 28 H 0.244 0.756 29 H 0.163 0.837 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.916 4.434 1.325 16.575 hybrid contribution 1.233 -0.978 -1.733 2.341 sum -14.683 3.455 -0.408 15.090 Atomic orbital electron populations 1.23424 0.75943 1.05707 1.02781 1.86084 1.23976 1.26326 1.89101 1.18703 0.90862 0.85638 0.98587 1.21325 1.01591 0.89508 1.06306 1.20078 0.87631 0.99730 1.00477 1.19981 0.92997 0.84575 1.07586 1.83936 1.15287 1.33471 1.77481 1.23872 0.84417 0.94555 1.03222 1.21608 0.93645 0.94987 1.06190 1.17013 0.84973 0.89340 0.91758 0.97826 1.59417 1.11482 1.10413 1.55539 1.21946 1.11875 1.32131 0.93865 0.94005 1.25724 0.95908 0.94812 1.01167 1.69826 1.17777 1.35490 1.32327 0.85616 0.77491 0.78423 0.80141 1.19368 1.20228 1.20487 1.19822 0.93463 0.94011 1.03485 1.19676 0.92638 0.96370 1.06925 0.90927 0.91119 0.86546 0.80084 0.81079 0.75607 0.83656 0.86913 0.92136 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -10.06 10.49 -93.30 -0.98 -11.03 16 3 C 0.11 3.54 6.68 22.48 0.15 3.69 16 4 C -0.17 -4.25 9.01 22.39 0.20 -4.05 16 5 C -0.06 -1.67 10.05 22.32 0.22 -1.44 16 6 C 0.00 -0.17 7.41 22.97 0.17 0.00 16 7 O -0.20 -7.44 10.59 -9.93 -0.11 -7.54 16 8 C 0.00 0.13 11.27 66.85 0.75 0.89 16 9 C -0.16 -7.62 5.40 -18.59 -0.10 -7.72 16 10 C 0.28 14.88 3.24 43.42 0.14 15.02 16 11 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 12 N -0.84 -40.71 8.96 -174.96 -1.57 -42.27 16 13 C -0.56 -31.52 8.71 25.60 0.22 -31.30 16 14 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 15 C 0.02 1.34 5.38 84.66 0.46 1.80 16 16 N -0.91 -51.65 11.54 21.45 0.25 -51.40 16 17 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C -0.11 -4.68 6.38 -20.21 -0.13 -4.81 16 22 C -0.14 -5.79 10.03 22.54 0.23 -5.56 16 23 H 0.07 0.91 7.65 -2.38 -0.02 0.89 16 24 H 0.07 0.91 7.65 -2.39 -0.02 0.90 16 25 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.18 2.75 6.26 -2.91 -0.02 2.73 16 27 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 28 H 0.23 7.43 7.34 -2.91 -0.02 7.41 16 29 H 0.35 18.14 7.08 -89.69 -0.63 17.51 16 30 H 0.32 14.12 8.00 -89.69 -0.72 13.40 16 31 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 32 H 0.11 4.93 8.06 -2.92 -0.02 4.91 16 Total: -1.00 -67.66 278.25 2.86 -64.80 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.19 Total: 33.64 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 3.43 Total: -32.13 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -1.32 Total: -93.67 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -1.08 Total: -18.58 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -67.66 2.86 -64.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.691 kcal (2) G-P(sol) polarization free energy of solvation -67.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds