Wall clock time and date at job start Mon Mar 30 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35982 * 116.99779 * 2 1 4 4 C 1.39188 * 119.92218 * 359.97438 * 3 2 1 5 5 C 1.37773 * 120.64039 * 180.02562 * 4 3 2 6 6 C 1.38925 * 120.03150 * 359.97438 * 5 4 3 7 7 O 1.34931 * 133.33682 * 180.33457 * 6 5 4 8 8 C 1.34425 * 110.88640 * 180.13347 * 7 6 5 9 9 C 1.34005 * 110.15426 * 359.54845 * 8 7 6 10 10 C 1.50701 * 126.90403 * 180.28795 * 9 8 7 11 11 H 1.09001 * 109.47018 * 219.97145 * 10 9 8 12 12 N 1.46897 * 109.47064 * 339.97916 * 10 9 8 13 13 C 1.50702 * 109.46823 * 99.97747 * 10 9 8 14 14 H 1.07991 * 120.00454 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99519 * 180.02562 * 13 10 9 16 16 N 1.31519 * 120.00395 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99972 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46747 * 89.99711 * 17 15 13 19 19 H 1.48495 * 109.47116 * 210.00104 * 17 15 13 20 20 H 1.48499 * 109.46719 * 329.99998 * 17 15 13 21 21 C 1.40447 * 119.41388 * 0.02562 * 6 5 4 22 22 C 1.38162 * 119.92068 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.46871 * 60.00229 * 1 2 3 24 24 H 1.08995 * 109.46744 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47299 * 300.00050 * 1 2 3 26 26 H 1.08003 * 119.68026 * 0.02562 * 4 3 2 27 27 H 1.07997 * 119.98564 * 180.02562 * 5 4 3 28 28 H 1.08002 * 124.92616 * 179.81949 * 8 7 6 29 29 H 1.00909 * 110.99601 * 296.04362 * 12 10 9 30 30 H 1.00899 * 111.00497 * 59.99831 * 12 10 9 31 31 H 0.96993 * 120.00073 * 179.97438 * 16 15 13 32 32 H 1.07999 * 120.22177 * 0.05115 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2867 2.3779 -0.0005 5 6 1.8967 3.6132 -0.0011 6 6 3.2829 3.7041 -0.0005 7 8 4.1427 4.7440 0.0049 8 6 5.4160 4.3131 -0.0002 9 6 5.4501 2.9735 0.0007 10 6 6.6778 2.0995 0.0022 11 1 6.5175 1.2467 -0.6575 12 7 7.8317 2.8753 -0.4716 13 6 6.9431 1.6086 1.4021 14 1 6.2886 1.9006 2.2099 15 6 8.0223 0.7875 1.6516 16 7 8.8197 0.4322 0.6680 17 14 8.3517 0.1795 3.3870 18 1 7.6398 -1.1054 3.6048 19 1 9.8109 -0.0257 3.5709 20 1 7.8663 1.1863 4.3647 21 6 4.0513 2.5285 0.0000 22 6 3.4262 1.2821 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2085 2.3138 -0.0005 27 1 1.2969 4.5114 -0.0011 28 1 6.2856 4.9536 -0.0003 29 1 7.7057 3.1613 -1.4311 30 1 8.0010 3.6720 0.1239 31 1 9.5791 -0.1451 0.8436 32 1 4.0167 0.3778 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261030141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:27 Heat of formation + Delta-G solvation = -25.621231 kcal Electronic energy + Delta-G solvation = -17455.110624 eV Core-core repulsion = 14574.767979 eV Total energy + Delta-G solvation = -2880.342645 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.29082 -40.56443 -37.39906 -36.96938 -33.99440 -32.55763 -30.91471 -29.74722 -28.16194 -27.87748 -24.65467 -24.11979 -22.80711 -20.77008 -19.07146 -18.57508 -18.15033 -17.50457 -17.00969 -16.52621 -16.47797 -16.40257 -15.96436 -15.06953 -14.73357 -14.34149 -14.18444 -13.97140 -13.77430 -13.29073 -13.20096 -12.81129 -12.68616 -12.52436 -11.92815 -11.76422 -11.69826 -11.54646 -10.72183 -10.53479 -9.20086 -9.01955 -8.86370 -7.99942 -6.21691 -0.07595 0.40262 1.39964 1.40560 1.48584 1.55107 1.92034 2.37960 2.45621 2.70276 3.22179 3.65995 3.74423 3.91932 4.17652 4.23941 4.40351 4.45304 4.46392 4.53290 4.63360 4.75992 4.89692 5.03194 5.19879 5.33468 5.41061 5.47656 5.54590 5.73306 6.14825 6.21332 6.47540 6.63772 7.06942 7.24513 7.50506 9.03054 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.007323 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.641665 B = 3822.825872 C = 4684.508818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.340 6.340 3 C 0.107 3.893 4 C -0.168 4.168 5 C -0.063 4.063 6 C -0.005 4.005 7 O -0.199 6.199 8 C -0.011 4.011 9 C -0.196 4.196 10 C 0.294 3.706 11 H 0.005 0.995 12 N -0.818 5.818 13 C -0.540 4.540 14 H 0.039 0.961 15 C 0.038 3.962 16 N -0.879 5.879 17 Si 0.946 3.054 18 H -0.279 1.279 19 H -0.279 1.279 20 H -0.272 1.272 21 C -0.105 4.105 22 C -0.134 4.134 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.070 0.930 26 H 0.182 0.818 27 H 0.171 0.829 28 H 0.227 0.773 29 H 0.316 0.684 30 H 0.327 0.673 31 H 0.257 0.743 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.771 5.393 -1.941 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.254 6.254 3 C 0.061 3.939 4 C -0.186 4.186 5 C -0.081 4.081 6 C -0.052 4.052 7 O -0.101 6.101 8 C -0.075 4.075 9 C -0.200 4.200 10 C 0.183 3.817 11 H 0.023 0.977 12 N -0.345 5.345 13 C -0.579 4.579 14 H 0.057 0.943 15 C -0.166 4.166 16 N -0.514 5.514 17 Si 0.771 3.229 18 H -0.205 1.205 19 H -0.204 1.204 20 H -0.197 1.197 21 C -0.107 4.107 22 C -0.153 4.153 23 H 0.091 0.909 24 H 0.135 0.865 25 H 0.089 0.911 26 H 0.199 0.801 27 H 0.188 0.812 28 H 0.243 0.757 29 H 0.127 0.873 30 H 0.140 0.860 31 H 0.066 0.934 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.173 4.690 -1.867 16.943 hybrid contribution -0.004 0.040 0.710 0.711 sum -16.178 4.730 -1.157 16.895 Atomic orbital electron populations 1.23422 0.75946 1.05728 1.02762 1.86093 1.23968 1.26302 1.89075 1.18723 0.90929 0.85628 0.98571 1.21331 1.01605 0.89529 1.06145 1.20074 0.87699 0.99703 1.00645 1.20020 0.93006 0.84634 1.07555 1.83926 1.15216 1.33478 1.77517 1.23870 0.84839 0.94380 1.04379 1.22961 0.95583 0.95661 1.05792 1.17123 0.80823 0.89136 0.94585 0.97697 1.58909 1.43703 1.27614 1.04284 1.21029 1.11947 1.31444 0.93484 0.94311 1.25637 0.95585 0.95522 0.99881 1.70212 1.15044 1.33813 1.32379 0.85781 0.77338 0.78572 0.81167 1.20498 1.20417 1.19701 1.19850 0.93601 0.93863 1.03360 1.19705 0.92584 0.96515 1.06492 0.90914 0.86535 0.91150 0.80121 0.81190 0.75658 0.87289 0.86012 0.93413 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -9.94 10.49 -93.34 -0.98 -10.92 16 3 C 0.11 3.47 6.68 22.48 0.15 3.62 16 4 C -0.17 -4.15 9.01 22.39 0.20 -3.94 16 5 C -0.06 -1.68 10.05 22.32 0.22 -1.46 16 6 C -0.01 -0.19 7.41 22.97 0.17 -0.02 16 7 O -0.20 -7.15 10.59 -9.94 -0.11 -7.26 16 8 C -0.01 -0.40 11.23 66.86 0.75 0.35 16 9 C -0.20 -8.81 5.43 -18.59 -0.10 -8.91 16 10 C 0.29 15.30 3.14 43.42 0.14 15.44 16 11 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 12 N -0.82 -38.27 8.24 -174.95 -1.44 -39.71 16 13 C -0.54 -31.04 8.71 25.60 0.22 -30.82 16 14 H 0.04 2.28 7.74 -2.92 -0.02 2.25 16 15 C 0.04 2.15 5.39 84.65 0.46 2.61 16 16 N -0.88 -52.54 12.77 21.45 0.27 -52.26 16 17 Si 0.95 45.18 29.54 68.60 2.03 47.20 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 21 C -0.11 -4.50 6.38 -20.21 -0.13 -4.63 16 22 C -0.13 -5.56 10.03 22.54 0.23 -5.34 16 23 H 0.07 0.89 7.65 -2.39 -0.02 0.87 16 24 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 26 H 0.18 2.69 6.26 -2.91 -0.02 2.67 16 27 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 28 H 0.23 6.72 7.34 -2.91 -0.02 6.70 16 29 H 0.32 12.98 9.06 -89.69 -0.81 12.17 16 30 H 0.33 13.98 8.03 -89.69 -0.72 13.26 16 31 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -71.85 280.67 2.83 -69.02 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.37 Total: 25.66 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 3.42 Total: -31.75 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -1.17 Total: -91.97 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -1.08 Total: -18.17 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -71.85 2.83 -69.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.403 kcal (2) G-P(sol) polarization free energy of solvation -71.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds