Wall clock time and date at job start Mon Mar 30 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48506 * 109.47078 * 179.72185 * 3 2 1 5 5 H 1.48499 * 109.47430 * 299.72387 * 3 2 1 6 6 H 1.48500 * 109.47362 * 59.72579 * 3 2 1 7 7 C 1.37876 * 120.00046 * 179.72130 * 2 1 3 8 8 H 1.08001 * 120.00061 * 180.27404 * 7 2 1 9 9 C 1.50694 * 120.00076 * 0.27990 * 7 2 1 10 10 H 1.09004 * 109.47231 * 59.99836 * 9 7 2 11 11 N 1.46901 * 109.47113 * 299.99843 * 9 7 2 12 12 C 1.50703 * 109.47165 * 179.97438 * 9 7 2 13 13 C 1.38263 * 119.94501 * 79.72890 * 12 9 7 14 14 C 1.38151 * 120.05591 * 179.72927 * 13 12 9 15 15 C 1.38736 * 119.93968 * 0.55929 * 14 13 12 16 16 O 1.35896 * 120.05140 * 179.68349 * 15 14 13 17 17 C 1.42897 * 116.99858 * 186.02049 * 16 15 14 18 18 C 1.53789 * 113.61590 * 255.99693 * 17 16 15 19 19 C 1.53957 * 87.01788 * 220.04771 * 18 17 16 20 20 C 1.53776 * 87.11216 * 25.36626 * 19 18 17 21 21 C 1.38733 * 119.88916 * 359.71354 * 15 14 13 22 22 C 1.38142 * 119.94427 * 359.97438 * 21 15 14 23 23 H 0.96997 * 119.99771 * 179.97438 * 1 2 3 24 24 H 1.00903 * 110.99772 * 176.04710 * 11 9 7 25 25 H 1.00901 * 111.00005 * 300.00012 * 11 9 7 26 26 H 1.07995 * 119.97392 * 359.97361 * 13 12 9 27 27 H 1.08000 * 120.02862 * 180.24666 * 14 13 12 28 28 H 1.09001 * 112.85283 * 27.19655 * 17 16 15 29 29 H 1.08997 * 113.61159 * 334.57090 * 18 17 16 30 30 H 1.08996 * 113.61194 * 105.46891 * 18 17 16 31 31 H 1.08999 * 113.53467 * 270.80537 * 19 18 17 32 32 H 1.09005 * 113.66005 * 139.93275 * 19 18 17 33 33 H 1.09006 * 113.61159 * 220.09245 * 20 19 18 34 34 H 1.08992 * 113.69432 * 89.19792 * 20 19 18 35 35 H 1.08000 * 120.02192 * 179.97438 * 21 15 14 36 36 H 1.08004 * 119.96814 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0068 5 1 1.8954 2.3936 -1.2158 6 1 1.8853 2.3994 1.2091 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1940 0.0103 9 6 1.2511 -2.4991 0.0058 10 1 0.6281 -2.5590 -0.8867 11 7 0.4015 -2.5741 1.2018 12 6 2.2304 -3.6445 0.0121 13 6 2.8367 -4.0277 1.1941 14 6 3.7306 -5.0810 1.2035 15 6 4.0284 -5.7469 0.0234 16 8 4.9123 -6.7792 0.0289 17 6 5.2717 -7.3322 -1.2387 18 6 4.5955 -8.6809 -1.5366 19 6 5.9392 -9.1303 -2.1390 20 6 6.6083 -8.0926 -1.2224 21 6 3.4229 -5.3569 -1.1623 22 6 2.5249 -4.3071 -1.1652 23 1 -0.4850 -0.8400 -0.0004 24 1 -0.1624 -3.4108 1.1929 25 1 0.9559 -2.5206 2.0432 26 1 2.6084 -3.5057 2.1115 27 1 4.2009 -5.3825 2.1278 28 1 5.1886 -6.6128 -2.0533 29 1 4.3115 -9.2341 -0.6414 30 1 3.7893 -8.6132 -2.2670 31 1 6.0378 -8.9034 -3.2006 32 1 6.2037 -10.1601 -1.8988 33 1 7.4248 -7.5505 -1.6996 34 1 6.8764 -8.4834 -0.2409 35 1 3.6535 -5.8735 -2.0823 36 1 2.0530 -4.0034 -2.0880 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261036564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:17 Heat of formation + Delta-G solvation = 2.982892 kcal Electronic energy + Delta-G solvation = -17398.468877 eV Core-core repulsion = 14655.199695 eV Total energy + Delta-G solvation = -2743.269183 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22101 -38.47986 -36.45045 -34.28735 -31.29499 -30.58538 -28.67375 -25.94031 -25.84444 -25.03051 -22.52709 -22.20168 -20.35417 -19.54332 -18.22413 -16.83458 -15.97862 -15.61309 -15.26295 -14.73848 -14.49481 -14.05880 -13.73641 -13.55646 -13.02230 -12.71627 -12.65196 -12.52416 -11.99416 -11.83826 -11.56444 -11.30237 -11.01848 -10.72196 -10.67031 -10.37329 -10.28290 -10.11335 -10.03289 -8.73754 -8.52160 -8.30182 -7.59422 -7.33471 -6.15152 -3.98339 1.82668 1.99112 3.40257 3.49552 3.52964 3.66689 4.23969 4.32732 4.37422 4.58877 4.62001 4.63983 5.05328 5.28065 5.33023 5.40716 5.48236 5.49632 5.59039 5.67368 5.74278 5.81945 5.86037 5.98652 6.03391 6.12659 6.27043 6.45667 6.74969 6.91722 6.97242 7.27509 7.43958 7.78635 8.02344 8.33358 8.69265 8.79540 9.08758 9.85328 11.24411 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.040646 B = 0.004571 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.708243 B = 6123.600511 C = 6316.002739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.037 3.963 3 Si 1.068 2.932 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.607 4.607 8 H 0.047 0.953 9 C 0.239 3.761 10 H 0.036 0.964 11 N -0.830 5.830 12 C -0.099 4.099 13 C -0.083 4.083 14 C -0.152 4.152 15 C 0.099 3.901 16 O -0.309 6.309 17 C 0.056 3.944 18 C -0.157 4.157 19 C -0.140 4.140 20 C -0.132 4.132 21 C -0.207 4.207 22 C -0.085 4.085 23 H 0.290 0.710 24 H 0.302 0.698 25 H 0.325 0.675 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.681 -16.039 -2.604 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.172 4.172 3 Si 0.898 3.102 4 H -0.218 1.218 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.646 4.646 8 H 0.065 0.935 9 C 0.130 3.870 10 H 0.054 0.946 11 N -0.357 5.357 12 C -0.102 4.102 13 C -0.102 4.102 14 C -0.171 4.171 15 C 0.055 3.945 16 O -0.223 6.223 17 C -0.001 4.001 18 C -0.195 4.195 19 C -0.178 4.178 20 C -0.169 4.169 21 C -0.225 4.225 22 C -0.104 4.104 23 H 0.103 0.897 24 H 0.112 0.888 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.214 -13.805 -2.711 16.818 hybrid contribution 0.798 -2.501 -0.025 2.625 sum 10.012 -16.306 -2.737 19.329 Atomic orbital electron populations 1.70491 1.06835 1.32837 1.42557 1.25624 0.96618 1.01820 0.93177 0.83579 0.74505 0.75318 0.76805 1.21792 1.21530 1.21465 1.21750 0.93446 0.90457 1.58934 0.93514 1.18319 0.87981 0.90601 0.90123 0.94625 1.59464 1.28618 1.42262 1.05360 1.21413 0.99249 0.97253 0.92254 1.20786 0.95547 0.95149 0.98695 1.20338 1.02424 0.98209 0.96138 1.18846 0.91955 0.89187 0.94492 1.86088 1.58961 1.46447 1.30826 1.24069 0.96313 0.93613 0.86067 1.23540 0.97441 0.96930 1.01602 1.22680 0.96448 0.99369 0.99268 1.23168 0.95916 0.96907 1.00945 1.21118 1.02604 1.02069 0.96736 1.20881 0.96876 0.94294 0.98323 0.89711 0.88796 0.86145 0.85902 0.86212 0.88465 0.89123 0.90989 0.89814 0.90555 0.90672 0.89008 0.86423 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.50 55.43 0.75 -26.24 16 2 C 0.04 1.07 5.39 -17.82 -0.10 0.97 16 3 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.61 -16.97 8.70 -34.44 -0.30 -17.27 16 8 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 9 C 0.24 5.89 2.46 -70.02 -0.17 5.71 16 10 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 11 N -0.83 -19.01 7.61 -6.65 -0.05 -19.06 16 12 C -0.10 -2.12 4.88 -104.60 -0.51 -2.63 16 13 C -0.08 -1.63 9.28 -39.60 -0.37 -1.99 16 14 C -0.15 -2.71 9.99 -39.43 -0.39 -3.10 16 15 C 0.10 1.71 6.68 -39.21 -0.26 1.45 16 16 O -0.31 -4.76 10.15 -19.41 -0.20 -4.96 16 17 C 0.06 0.66 3.61 -25.91 -0.09 0.57 16 18 C -0.16 -1.56 7.93 -25.82 -0.20 -1.76 16 19 C -0.14 -1.10 8.09 -25.83 -0.21 -1.31 16 20 C -0.13 -1.23 7.91 -25.92 -0.21 -1.44 16 21 C -0.21 -3.52 9.01 -39.43 -0.36 -3.88 16 22 C -0.08 -1.65 9.66 -39.61 -0.38 -2.03 16 23 H 0.29 8.76 6.39 -40.82 -0.26 8.50 16 24 H 0.30 6.12 9.06 -39.29 -0.36 5.77 16 25 H 0.33 7.16 7.34 -39.29 -0.29 6.88 16 26 H 0.12 2.31 6.67 -52.49 -0.35 1.96 16 27 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.10 1.13 6.08 -51.93 -0.32 0.82 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 1.68 5.96 -52.49 -0.31 1.37 16 36 H 0.12 2.20 8.03 -52.48 -0.42 1.78 16 LS Contribution 298.13 15.07 4.49 4.49 Total: -1.00 -30.93 298.13 -8.52 -39.45 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -4.88 Total: 12.57 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -3.55 Total: -26.72 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.70 Total: -45.30 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.96 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.93 -8.52 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.430 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds