Wall clock time and date at job start Mon Mar 30 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48506 * 109.47078 * 179.72185 * 3 2 1 5 5 H 1.48499 * 109.47430 * 299.72387 * 3 2 1 6 6 H 1.48500 * 109.47362 * 59.72579 * 3 2 1 7 7 C 1.37876 * 120.00046 * 179.72130 * 2 1 3 8 8 H 1.08001 * 120.00061 * 180.27404 * 7 2 1 9 9 C 1.50694 * 120.00076 * 0.27990 * 7 2 1 10 10 H 1.09004 * 109.47231 * 59.99836 * 9 7 2 11 11 N 1.46901 * 109.47113 * 299.99843 * 9 7 2 12 12 C 1.50703 * 109.47165 * 179.97438 * 9 7 2 13 13 C 1.38263 * 119.94501 * 79.72890 * 12 9 7 14 14 C 1.38151 * 120.05591 * 179.72927 * 13 12 9 15 15 C 1.38736 * 119.93968 * 0.55929 * 14 13 12 16 16 O 1.35896 * 120.05140 * 179.68349 * 15 14 13 17 17 C 1.42897 * 116.99858 * 186.02049 * 16 15 14 18 18 C 1.53789 * 113.61590 * 255.99693 * 17 16 15 19 19 C 1.53957 * 87.01788 * 220.04771 * 18 17 16 20 20 C 1.53776 * 87.11216 * 25.36626 * 19 18 17 21 21 C 1.38733 * 119.88916 * 359.71354 * 15 14 13 22 22 C 1.38142 * 119.94427 * 359.97438 * 21 15 14 23 23 H 0.96997 * 119.99771 * 179.97438 * 1 2 3 24 24 H 1.00903 * 110.99772 * 176.04710 * 11 9 7 25 25 H 1.00901 * 111.00005 * 300.00012 * 11 9 7 26 26 H 1.07995 * 119.97392 * 359.97361 * 13 12 9 27 27 H 1.08000 * 120.02862 * 180.24666 * 14 13 12 28 28 H 1.09001 * 112.85283 * 27.19655 * 17 16 15 29 29 H 1.08997 * 113.61159 * 334.57090 * 18 17 16 30 30 H 1.08996 * 113.61194 * 105.46891 * 18 17 16 31 31 H 1.08999 * 113.53467 * 270.80537 * 19 18 17 32 32 H 1.09005 * 113.66005 * 139.93275 * 19 18 17 33 33 H 1.09006 * 113.61159 * 220.09245 * 20 19 18 34 34 H 1.08992 * 113.69432 * 89.19792 * 20 19 18 35 35 H 1.08000 * 120.02192 * 179.97438 * 21 15 14 36 36 H 1.08004 * 119.96814 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0068 5 1 1.8954 2.3936 -1.2158 6 1 1.8853 2.3994 1.2091 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1940 0.0103 9 6 1.2511 -2.4991 0.0058 10 1 0.6281 -2.5590 -0.8867 11 7 0.4015 -2.5741 1.2018 12 6 2.2304 -3.6445 0.0121 13 6 2.8367 -4.0277 1.1941 14 6 3.7306 -5.0810 1.2035 15 6 4.0284 -5.7469 0.0234 16 8 4.9123 -6.7792 0.0289 17 6 5.2717 -7.3322 -1.2387 18 6 4.5955 -8.6809 -1.5366 19 6 5.9392 -9.1303 -2.1390 20 6 6.6083 -8.0926 -1.2224 21 6 3.4229 -5.3569 -1.1623 22 6 2.5249 -4.3071 -1.1652 23 1 -0.4850 -0.8400 -0.0004 24 1 -0.1624 -3.4108 1.1929 25 1 0.9559 -2.5206 2.0432 26 1 2.6084 -3.5057 2.1115 27 1 4.2009 -5.3825 2.1278 28 1 5.1886 -6.6128 -2.0533 29 1 4.3115 -9.2341 -0.6414 30 1 3.7893 -8.6132 -2.2670 31 1 6.0378 -8.9034 -3.2006 32 1 6.2037 -10.1601 -1.8988 33 1 7.4248 -7.5505 -1.6996 34 1 6.8764 -8.4834 -0.2409 35 1 3.6535 -5.8735 -2.0823 36 1 2.0530 -4.0034 -2.0880 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:16 Heat of formation + Delta-G solvation = -16.059039 kcal Electronic energy + Delta-G solvation = -17399.294597 eV Core-core repulsion = 14655.199695 eV Total energy + Delta-G solvation = -2744.094903 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39293 -39.72824 -37.68268 -36.03515 -33.30807 -32.03197 -30.24330 -27.55842 -26.66481 -26.33298 -24.21975 -23.60673 -21.88181 -20.48296 -19.44193 -18.86505 -17.17306 -16.93255 -16.54146 -16.25129 -15.80466 -15.55632 -15.35382 -15.12553 -14.54051 -14.28850 -13.90859 -13.56981 -13.43690 -13.11243 -12.95111 -12.57402 -12.43497 -12.21277 -12.09235 -11.90643 -11.73929 -11.34804 -11.22495 -10.71153 -10.47216 -9.97082 -9.40410 -8.89831 -8.36901 -6.23977 0.37553 0.51029 1.55689 1.64483 1.80492 2.27724 2.61948 2.84041 3.32116 3.53874 3.56941 3.77638 3.82680 3.90173 3.96928 4.19838 4.23581 4.28030 4.47523 4.56047 4.72236 4.76150 4.76911 4.93062 4.96182 5.01490 5.07473 5.16884 5.28492 5.39043 5.43070 5.79624 5.82527 5.96361 6.23793 6.51600 6.68994 6.78714 7.05528 7.67180 8.98446 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.040646 B = 0.004571 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.708243 B = 6123.600511 C = 6316.002739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 1.114 2.886 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.615 4.615 8 H 0.033 0.967 9 C 0.243 3.757 10 H 0.007 0.993 11 N -0.836 5.836 12 C -0.128 4.128 13 C -0.088 4.088 14 C -0.156 4.156 15 C 0.108 3.892 16 O -0.315 6.315 17 C 0.033 3.967 18 C -0.158 4.158 19 C -0.126 4.126 20 C -0.129 4.129 21 C -0.200 4.200 22 C -0.096 4.096 23 H 0.279 0.721 24 H 0.317 0.683 25 H 0.330 0.670 26 H 0.123 0.877 27 H 0.141 0.859 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.535 -17.474 -2.996 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.214 4.214 3 Si 0.938 3.062 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.653 4.653 8 H 0.052 0.948 9 C 0.134 3.866 10 H 0.024 0.976 11 N -0.364 5.364 12 C -0.130 4.130 13 C -0.106 4.106 14 C -0.175 4.175 15 C 0.063 3.937 16 O -0.230 6.230 17 C -0.022 4.022 18 C -0.196 4.196 19 C -0.163 4.163 20 C -0.166 4.166 21 C -0.218 4.218 22 C -0.114 4.114 23 H 0.091 0.909 24 H 0.129 0.871 25 H 0.144 0.856 26 H 0.141 0.859 27 H 0.159 0.841 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.164 0.836 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.077 -15.272 -3.107 19.120 hybrid contribution 0.295 -2.228 0.071 2.248 sum 11.372 -17.500 -3.036 21.090 Atomic orbital electron populations 1.70609 1.07683 1.32201 1.45047 1.26958 0.96721 1.05385 0.92379 0.82970 0.73962 0.72001 0.77276 1.20559 1.20637 1.20740 1.22026 0.92984 0.92255 1.58051 0.94847 1.17991 0.88215 0.90951 0.89451 0.97561 1.59227 1.28789 1.43424 1.04986 1.21118 1.00342 0.97623 0.93965 1.20786 0.95958 0.95859 0.98004 1.20539 1.01873 0.97589 0.97461 1.18965 0.91472 0.89071 0.94210 1.86107 1.58114 1.45548 1.33195 1.24577 0.98590 0.94332 0.84727 1.23554 0.98686 0.95618 1.01731 1.22677 0.94240 0.99773 0.99646 1.23209 0.95011 0.96918 1.01492 1.21320 1.01351 1.01090 0.98071 1.20967 0.97648 0.95101 0.97720 0.90944 0.87138 0.85609 0.85894 0.84117 0.88220 0.89637 0.90569 0.88410 0.89048 0.89640 0.89117 0.83566 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.62 13.50 21.45 0.29 -56.33 16 2 C -0.01 -0.63 5.39 84.66 0.46 -0.17 16 3 Si 1.11 51.61 29.90 68.60 2.05 53.66 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.61 -35.03 8.70 25.60 0.22 -34.81 16 8 H 0.03 1.95 7.74 -2.91 -0.02 1.92 16 9 C 0.24 12.35 2.46 43.42 0.11 12.46 16 10 H 0.01 0.36 7.87 -2.38 -0.02 0.34 16 11 N -0.84 -39.17 7.61 -174.95 -1.33 -40.50 16 12 C -0.13 -5.54 4.88 -19.85 -0.10 -5.64 16 13 C -0.09 -3.40 9.28 22.26 0.21 -3.20 16 14 C -0.16 -5.34 9.99 22.37 0.22 -5.11 16 15 C 0.11 3.52 6.68 22.51 0.15 3.67 16 16 O -0.32 -9.00 10.15 -92.38 -0.94 -9.94 16 17 C 0.03 0.71 3.61 31.12 0.11 0.82 16 18 C -0.16 -2.70 7.93 31.18 0.25 -2.45 16 19 C -0.13 -1.54 8.09 31.18 0.25 -1.29 16 20 C -0.13 -2.02 7.91 31.12 0.25 -1.78 16 21 C -0.20 -6.51 9.01 22.37 0.20 -6.31 16 22 C -0.10 -3.71 9.66 22.25 0.21 -3.49 16 23 H 0.28 17.34 6.39 -92.71 -0.59 16.75 16 24 H 0.32 13.13 9.06 -89.69 -0.81 12.32 16 25 H 0.33 14.80 7.34 -89.69 -0.66 14.14 16 26 H 0.12 4.65 6.67 -2.91 -0.02 4.63 16 27 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 28 H 0.10 2.04 6.08 -2.39 -0.01 2.03 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.15 3.83 5.96 -2.91 -0.02 3.81 16 36 H 0.12 4.46 8.03 -2.91 -0.02 4.44 16 Total: -1.00 -66.56 298.13 2.42 -64.14 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -0.20 Total: 36.27 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 2.54 Total: -47.29 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -1.04 Total: -96.83 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.94 Total: -9.94 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Total: -66.56 2.42 -64.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.086 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds