Wall clock time and date at job start Mon Mar 30 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47536 * 2 1 4 4 N 1.46499 * 109.47187 * 120.00245 * 2 1 3 5 5 C 1.35587 * 124.69894 * 299.97248 * 4 2 1 6 6 C 1.38901 * 109.28398 * 179.76306 * 5 4 2 7 7 C 1.40890 * 126.93519 * 180.29482 * 6 5 4 8 8 H 1.08000 * 120.00588 * 161.34990 * 7 6 5 9 9 C 1.39732 * 119.99511 * 341.35921 * 7 6 5 10 10 N 1.31066 * 120.00104 * 164.15867 * 9 7 6 11 11 Si 1.86797 * 120.00064 * 344.14927 * 9 7 6 12 12 H 1.48506 * 109.47104 * 91.11880 * 11 9 7 13 13 H 1.48503 * 109.47266 * 211.11420 * 11 9 7 14 14 H 1.48496 * 109.47231 * 331.11705 * 11 9 7 15 15 C 1.47677 * 106.14341 * 0.39455 * 6 5 4 16 16 C 1.39247 * 133.75940 * 179.89305 * 15 6 5 17 17 C 1.37864 * 119.74063 * 179.68832 * 16 15 6 18 18 C 1.38659 * 120.27034 * 359.97438 * 17 16 15 19 19 C 1.38070 * 120.59472 * 359.97438 * 18 17 16 20 20 F 1.35106 * 120.03514 * 179.97438 * 19 18 17 21 21 C 1.38218 * 124.69523 * 120.00068 * 4 2 1 22 22 H 1.09001 * 109.47468 * 59.99617 * 1 2 3 23 23 H 1.08999 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47412 * 299.99850 * 1 2 3 25 25 H 1.09005 * 109.47412 * 240.00150 * 2 1 3 26 26 H 1.08993 * 109.47305 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47055 * 300.00636 * 3 2 1 28 28 H 1.09005 * 109.46648 * 59.99682 * 3 2 1 29 29 H 1.08002 * 125.35521 * 0.02562 * 5 4 2 30 30 H 0.96996 * 120.00081 * 179.97438 * 10 9 7 31 31 H 1.08008 * 120.12648 * 359.71239 * 16 15 6 32 32 H 1.07999 * 119.86344 * 180.02562 * 17 16 15 33 33 H 1.08006 * 119.70393 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7505 -0.3111 2.4700 6 6 2.3663 -1.1917 3.3501 7 6 2.3266 -1.1480 4.7577 8 1 2.5773 -2.0272 5.3327 9 6 1.9627 0.0329 5.4100 10 7 1.6237 0.0048 6.6757 11 14 1.9595 1.6518 4.4780 12 1 0.6150 1.8825 3.8911 13 1 2.2895 2.7601 5.4097 14 1 2.9712 1.6000 3.3923 15 6 3.0732 -2.1818 2.5128 16 6 3.8606 -3.2950 2.7953 17 6 4.3871 -4.0403 1.7619 18 6 4.1351 -3.6856 0.4453 19 6 3.3552 -2.5849 0.1509 20 9 3.1173 -2.2494 -1.1360 21 6 2.8163 -1.8191 1.1823 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.1492 0.5394 2.7553 30 1 1.3715 0.8246 7.1286 31 1 4.0577 -3.5737 3.8200 32 1 4.9977 -4.9043 1.9787 33 1 4.5519 -4.2762 -0.3572 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261050039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:28 Heat of formation + Delta-G solvation = -13.279684 kcal Electronic energy + Delta-G solvation = -18005.226001 eV Core-core repulsion = 15137.791315 eV Total energy + Delta-G solvation = -2867.434686 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.75139 -41.82704 -38.11779 -36.11517 -34.75743 -32.19842 -30.21209 -29.76067 -28.25724 -26.84078 -23.67446 -23.34174 -21.98024 -20.95942 -19.14802 -17.97954 -17.63962 -16.84716 -16.64982 -16.47140 -15.90219 -15.74014 -15.38396 -15.21292 -14.88995 -14.16032 -13.88948 -13.49372 -13.30778 -13.21610 -13.17256 -12.87556 -12.52208 -12.47355 -12.40992 -11.97980 -11.84275 -11.74254 -11.51797 -11.13848 -10.18134 -8.98830 -8.75665 -8.59084 -6.12448 0.19988 0.73145 1.16136 1.30559 1.44981 1.83227 2.10580 2.17827 2.83553 3.36382 3.43012 3.67437 3.84597 3.99425 4.09635 4.12553 4.20924 4.55848 4.57376 4.60196 4.66671 4.73594 4.81871 4.88377 5.02102 5.12749 5.16502 5.25638 5.33006 5.48506 5.77798 5.81108 6.05167 6.32518 6.47210 6.65219 6.87662 6.96537 8.35097 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.010793 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.207378 B = 2593.599744 C = 3690.222051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.117 3.883 3 C -0.157 4.157 4 N -0.460 5.460 5 C -0.140 4.140 6 C 0.001 3.999 7 C -0.448 4.448 8 H 0.055 0.945 9 C 0.041 3.959 10 N -0.871 5.871 11 Si 0.958 3.042 12 H -0.259 1.259 13 H -0.284 1.284 14 H -0.252 1.252 15 C -0.142 4.142 16 C -0.072 4.072 17 C -0.149 4.149 18 C -0.120 4.120 19 C 0.042 3.958 20 F -0.151 7.151 21 C 0.061 3.939 22 H 0.104 0.896 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.103 0.897 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.144 0.856 30 H 0.287 0.713 31 H 0.119 0.881 32 H 0.161 0.839 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -0.235 -13.875 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.015 3.985 3 C -0.215 4.215 4 N -0.143 5.143 5 C -0.262 4.262 6 C -0.005 4.005 7 C -0.481 4.481 8 H 0.073 0.927 9 C -0.170 4.170 10 N -0.501 5.501 11 Si 0.784 3.216 12 H -0.186 1.186 13 H -0.211 1.211 14 H -0.176 1.176 15 C -0.149 4.149 16 C -0.090 4.090 17 C -0.168 4.168 18 C -0.140 4.140 19 C 0.019 3.981 20 F -0.130 7.130 21 C -0.050 4.050 22 H 0.122 0.878 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.125 0.875 28 H 0.066 0.934 29 H 0.161 0.839 30 H 0.097 0.903 31 H 0.137 0.863 32 H 0.178 0.822 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.193 0.114 -13.898 13.950 hybrid contribution -0.270 0.802 0.322 0.906 sum 0.923 0.916 -13.576 13.638 Atomic orbital electron populations 1.22124 0.92978 1.02515 1.03552 1.21667 0.96163 0.94305 0.86353 1.22161 1.01253 0.94508 1.03542 1.43432 1.42816 1.22394 1.05691 1.21481 1.14642 1.07314 0.82745 1.18362 0.96146 0.93769 0.92262 1.18519 1.41669 0.98296 0.89591 0.92684 1.26541 0.91442 1.03441 0.95547 1.69799 1.36510 1.31364 1.12389 0.85635 0.80184 0.77256 0.78536 1.18557 1.21096 1.17634 1.19439 1.03830 0.99945 0.91690 1.20754 0.95357 0.92877 1.00038 1.20864 1.03645 1.01823 0.90511 1.21005 0.98756 0.95359 0.98848 1.16846 1.06264 0.99342 0.75616 1.91340 1.93723 1.92414 1.35473 1.18428 0.99848 0.91974 0.94760 0.87761 0.92984 0.93118 0.87894 0.93148 0.87545 0.93350 0.83919 0.90267 0.86291 0.82164 0.81924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.22 71.98 0.66 -3.61 16 2 C 0.12 3.76 3.52 44.99 0.16 3.91 16 3 C -0.16 -4.43 9.22 71.98 0.66 -3.77 16 4 N -0.46 -19.39 2.64 -490.16 -1.29 -20.68 16 5 C -0.14 -6.68 7.49 84.27 0.63 -6.04 16 6 C 0.00 0.04 5.67 -19.98 -0.11 -0.07 16 7 C -0.45 -25.88 9.94 23.28 0.23 -25.65 16 8 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 9 C 0.04 2.26 5.50 85.17 0.47 2.73 16 10 N -0.87 -49.59 13.94 21.80 0.30 -49.29 16 11 Si 0.96 43.72 24.54 68.60 1.68 45.40 16 12 H -0.26 -11.06 6.70 99.48 0.67 -10.39 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.25 -11.68 6.56 99.48 0.65 -11.03 16 15 C -0.14 -6.73 6.33 -20.05 -0.13 -6.85 16 16 C -0.07 -2.87 10.09 22.42 0.23 -2.64 16 17 C -0.15 -4.64 10.03 22.28 0.22 -4.41 16 18 C -0.12 -3.67 9.99 22.33 0.22 -3.45 16 19 C 0.04 1.53 7.32 22.49 0.16 1.69 16 20 F -0.15 -5.08 15.23 44.97 0.69 -4.39 16 21 C 0.06 2.62 6.78 38.89 0.26 2.89 16 22 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.53 7.87 -2.38 -0.02 1.51 16 25 H 0.10 3.14 5.95 -2.38 -0.01 3.12 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.48 7.87 -2.38 -0.02 1.46 16 29 H 0.14 6.67 4.16 -2.91 -0.01 6.66 16 30 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 31 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 32 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -64.10 276.78 6.08 -58.02 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 1.02 Total: 16.23 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 3.68 Total: -45.29 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -0.99 Total: -69.97 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.69 Total: -4.39 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.68 Total: 45.40 kcal Total: -64.10 6.08 -58.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.739 kcal (2) G-P(sol) polarization free energy of solvation -64.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds