Wall clock time and date at job start Mon Mar 30 2020 06:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99657 * 2 1 4 4 H 1.48502 * 109.47408 * 269.99641 * 3 2 1 5 5 H 1.48497 * 109.47243 * 29.99743 * 3 2 1 6 6 H 1.48499 * 109.47362 * 149.99805 * 3 2 1 7 7 C 1.37879 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99715 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47011 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47110 * 55.00212 * 10 9 7 12 12 N 1.46901 * 109.47214 * 295.00127 * 10 9 7 13 13 C 1.50701 * 109.47213 * 174.99862 * 10 9 7 14 14 C 1.38270 * 120.04610 * 80.28157 * 13 10 9 15 15 C 1.38071 * 119.85531 * 180.32105 * 14 13 10 16 16 C 1.38596 * 120.27548 * 359.40453 * 15 14 13 17 17 C 1.37903 * 119.88883 * 0.20945 * 16 15 14 18 18 C 1.38050 * 120.05396 * 260.00239 * 13 10 9 19 19 C 1.50658 * 121.50671 * 180.31641 * 17 16 15 20 20 O 1.42728 * 110.26513 * 343.95839 * 19 17 16 21 21 C 1.43216 * 113.13468 * 51.75415 * 20 19 17 22 22 C 1.50753 * 118.76122 * 180.02562 * 16 15 14 23 23 H 0.96999 * 120.00316 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47072 * 59.99767 * 9 7 2 25 25 H 1.09000 * 109.46934 * 300.00299 * 9 7 2 26 26 H 1.00904 * 110.99651 * 176.04805 * 12 10 9 27 27 H 1.00898 * 111.00320 * 299.99829 * 12 10 9 28 28 H 1.07995 * 120.07188 * 0.07531 * 14 13 10 29 29 H 1.08002 * 119.86352 * 179.68850 * 15 14 13 30 30 H 1.07994 * 119.84440 * 0.08280 * 18 13 10 31 31 H 1.09002 * 109.33411 * 223.72119 * 19 17 16 32 32 H 1.08997 * 109.20945 * 104.12102 * 19 17 16 33 33 H 1.09002 * 109.63184 * 169.62435 * 21 20 19 34 34 H 1.08999 * 109.80147 * 49.11152 * 21 20 19 35 35 H 1.08996 * 109.42123 * 283.24896 * 22 16 15 36 36 H 1.09006 * 109.41769 * 43.13199 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9296 -3.5551 0.8424 12 7 3.0086 -3.6538 -1.2547 13 6 1.4961 -4.9636 0.1244 14 6 0.8990 -5.5273 -0.9881 15 6 0.2078 -6.7165 -0.8688 16 6 0.1206 -7.3539 0.3588 17 6 0.7228 -6.7963 1.4670 18 6 1.4098 -5.5980 1.3475 19 6 0.6569 -7.4613 2.8173 20 8 -0.3695 -8.4530 2.8303 21 6 -0.2705 -9.3797 1.7429 22 6 -0.6421 -8.6511 0.4501 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.7163 -4.3730 -1.2522 27 1 2.3964 -3.7516 -2.0507 28 1 0.9696 -5.0363 -1.9473 29 1 -0.2630 -7.1543 -1.7366 30 1 1.8793 -5.1586 2.2151 31 1 0.4438 -6.7113 3.5790 32 1 1.6163 -7.9319 3.0324 33 1 -0.9574 -10.2101 1.9057 34 1 0.7497 -9.7568 1.6708 35 1 -1.7121 -8.4436 0.4455 36 1 -0.3911 -9.2799 -0.4043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261054699.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:21 Heat of formation + Delta-G solvation = -35.282502 kcal Electronic energy + Delta-G solvation = -17536.083174 eV Core-core repulsion = 14791.154680 eV Total energy + Delta-G solvation = -2744.928495 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21666 -37.95754 -35.28883 -32.82810 -32.34270 -31.09230 -29.26612 -28.14229 -25.42531 -24.70302 -23.04924 -22.05030 -20.83515 -18.99772 -16.82256 -16.45165 -16.17118 -15.79399 -15.20792 -14.89462 -14.60056 -14.30440 -14.06715 -13.56044 -13.14427 -13.00703 -12.62704 -12.39666 -12.02947 -11.75029 -11.57284 -11.08932 -11.00880 -10.79800 -10.68124 -10.49484 -10.20370 -9.76471 -9.54909 -9.07986 -8.52825 -8.29158 -8.15255 -7.90090 -5.90288 -3.89435 1.52972 1.60586 3.39299 3.44914 3.49152 3.75376 3.92787 4.55019 4.65767 4.74867 4.81539 5.05060 5.10911 5.26708 5.33648 5.36491 5.40431 5.49023 5.51839 5.53389 5.78029 5.80977 5.86551 6.05532 6.26388 6.34809 6.60523 6.69328 6.75645 6.94785 7.02509 7.24076 7.55220 7.71075 7.98648 8.09875 8.17495 8.53454 9.16798 9.72592 11.21443 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.038883 B = 0.004766 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.935496 B = 5873.436343 C = 6075.475809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.495 4.495 8 H 0.062 0.938 9 C 0.037 3.963 10 C 0.131 3.869 11 H 0.077 0.923 12 N -0.821 5.821 13 C -0.095 4.095 14 C -0.115 4.115 15 C -0.116 4.116 16 C -0.092 4.092 17 C -0.122 4.122 18 C -0.108 4.108 19 C 0.103 3.897 20 O -0.377 6.377 21 C 0.059 3.941 22 C -0.111 4.111 23 H 0.258 0.742 24 H 0.016 0.984 25 H 0.020 0.980 26 H 0.321 0.679 27 H 0.333 0.667 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 -18.418 1.256 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.149 4.149 3 Si 0.722 3.278 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.000 4.000 10 C 0.019 3.981 11 H 0.095 0.905 12 N -0.348 5.348 13 C -0.097 4.097 14 C -0.133 4.133 15 C -0.134 4.134 16 C -0.093 4.093 17 C -0.122 4.122 18 C -0.126 4.126 19 C 0.027 3.973 20 O -0.295 6.295 21 C -0.017 4.017 22 C -0.148 4.148 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.038 0.962 26 H 0.132 0.868 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.881 -17.540 1.606 17.635 hybrid contribution 0.104 0.098 -0.499 0.519 sum 0.985 -17.442 1.107 17.505 Atomic orbital electron populations 1.69976 1.06030 1.26367 1.51921 1.25027 0.94798 0.99191 0.95898 0.86575 0.79748 0.83553 0.77952 1.20858 1.21562 1.19961 1.21163 0.93369 0.90065 1.48730 0.91952 1.19126 0.92843 0.90697 0.97307 1.20823 0.94761 0.90245 0.92255 0.90475 1.58871 1.17813 1.54072 1.03997 1.21351 0.97598 0.97780 0.92971 1.20945 0.98066 0.95481 0.98841 1.20953 0.99848 0.95987 0.96627 1.19306 0.99812 0.97018 0.93119 1.20135 0.99915 0.96581 0.95561 1.20889 0.99736 0.94220 0.97803 1.21424 0.91144 0.90443 0.94293 1.88056 1.51683 1.42022 1.47766 1.22594 1.01236 0.91678 0.86228 1.21061 1.00562 0.94371 0.98807 0.93238 0.96583 0.96212 0.86789 0.85302 0.86219 0.86483 0.85944 0.87678 0.92031 0.88622 0.92823 0.90016 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.49 -14.03 8.84 -34.44 -0.30 -14.34 16 8 H 0.06 1.76 7.74 -52.49 -0.41 1.36 16 9 C 0.04 0.96 4.60 -27.89 -0.13 0.84 16 10 C 0.13 2.64 2.93 -68.87 -0.20 2.44 16 11 H 0.08 1.58 8.00 -51.93 -0.42 1.17 16 12 N -0.82 -15.11 8.77 -5.65 -0.05 -15.16 16 13 C -0.09 -1.68 4.94 -104.68 -0.52 -2.19 16 14 C -0.11 -1.87 9.30 -39.63 -0.37 -2.24 16 15 C -0.12 -1.68 9.67 -39.51 -0.38 -2.06 16 16 C -0.09 -1.30 5.78 -104.59 -0.60 -1.91 16 17 C -0.12 -1.79 5.80 -104.62 -0.61 -2.40 16 18 C -0.11 -1.75 9.30 -39.50 -0.37 -2.12 16 19 C 0.10 1.28 6.66 35.99 0.24 1.52 16 20 O -0.38 -4.88 10.80 -35.23 -0.38 -5.26 16 21 C 0.06 0.60 6.85 37.14 0.25 0.85 16 22 C -0.11 -1.20 6.00 -27.87 -0.17 -1.37 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.32 4.99 9.06 -39.29 -0.36 4.63 16 27 H 0.33 5.87 7.35 -39.29 -0.29 5.58 16 28 H 0.12 1.85 6.66 -52.49 -0.35 1.50 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.84 8.03 -52.49 -0.42 1.41 16 31 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 298.13 15.07 4.49 4.49 Total: -1.00 -31.99 298.13 -8.65 -40.64 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.17 Total: 6.50 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -3.25 Total: -21.60 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.69 Total: -41.96 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.38 Total: -5.26 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.99 -8.65 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054699.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.360 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds