Wall clock time and date at job start Mon Mar 30 2020 06:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99657 * 2 1 4 4 H 1.48502 * 109.47408 * 269.99641 * 3 2 1 5 5 H 1.48497 * 109.47243 * 29.99743 * 3 2 1 6 6 H 1.48499 * 109.47362 * 149.99805 * 3 2 1 7 7 C 1.37879 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99715 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47011 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47110 * 55.00212 * 10 9 7 12 12 N 1.46901 * 109.47214 * 295.00127 * 10 9 7 13 13 C 1.50701 * 109.47213 * 174.99862 * 10 9 7 14 14 C 1.38270 * 120.04610 * 80.28157 * 13 10 9 15 15 C 1.38071 * 119.85531 * 180.32105 * 14 13 10 16 16 C 1.38596 * 120.27548 * 359.40453 * 15 14 13 17 17 C 1.37903 * 119.88883 * 0.20945 * 16 15 14 18 18 C 1.38050 * 120.05396 * 260.00239 * 13 10 9 19 19 C 1.50658 * 121.50671 * 180.31641 * 17 16 15 20 20 O 1.42728 * 110.26513 * 343.95839 * 19 17 16 21 21 C 1.43216 * 113.13468 * 51.75415 * 20 19 17 22 22 C 1.50753 * 118.76122 * 180.02562 * 16 15 14 23 23 H 0.96999 * 120.00316 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47072 * 59.99767 * 9 7 2 25 25 H 1.09000 * 109.46934 * 300.00299 * 9 7 2 26 26 H 1.00904 * 110.99651 * 176.04805 * 12 10 9 27 27 H 1.00898 * 111.00320 * 299.99829 * 12 10 9 28 28 H 1.07995 * 120.07188 * 0.07531 * 14 13 10 29 29 H 1.08002 * 119.86352 * 179.68850 * 15 14 13 30 30 H 1.07994 * 119.84440 * 0.08280 * 18 13 10 31 31 H 1.09002 * 109.33411 * 223.72119 * 19 17 16 32 32 H 1.08997 * 109.20945 * 104.12102 * 19 17 16 33 33 H 1.09002 * 109.63184 * 169.62435 * 21 20 19 34 34 H 1.08999 * 109.80147 * 49.11152 * 21 20 19 35 35 H 1.08996 * 109.42123 * 283.24896 * 22 16 15 36 36 H 1.09006 * 109.41769 * 43.13199 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9296 -3.5551 0.8424 12 7 3.0086 -3.6538 -1.2547 13 6 1.4961 -4.9636 0.1244 14 6 0.8990 -5.5273 -0.9881 15 6 0.2078 -6.7165 -0.8688 16 6 0.1206 -7.3539 0.3588 17 6 0.7228 -6.7963 1.4670 18 6 1.4098 -5.5980 1.3475 19 6 0.6569 -7.4613 2.8173 20 8 -0.3695 -8.4530 2.8303 21 6 -0.2705 -9.3797 1.7429 22 6 -0.6421 -8.6511 0.4501 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.7163 -4.3730 -1.2522 27 1 2.3964 -3.7516 -2.0507 28 1 0.9696 -5.0363 -1.9473 29 1 -0.2630 -7.1543 -1.7366 30 1 1.8793 -5.1586 2.2151 31 1 0.4438 -6.7113 3.5790 32 1 1.6163 -7.9319 3.0324 33 1 -0.9574 -10.2101 1.9057 34 1 0.7497 -9.7568 1.6708 35 1 -1.7121 -8.4436 0.4455 36 1 -0.3911 -9.2799 -0.4043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261054699.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:21 Heat of formation + Delta-G solvation = -56.559402 kcal Electronic energy + Delta-G solvation = -17537.005810 eV Core-core repulsion = 14791.154680 eV Total energy + Delta-G solvation = -2745.851130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30663 -39.10583 -36.76218 -34.62851 -33.65788 -32.27967 -30.51690 -29.99656 -26.52143 -26.26464 -24.48703 -23.21295 -22.31993 -20.27319 -18.57892 -17.62703 -17.46656 -16.99019 -16.58308 -16.35739 -16.08255 -15.66981 -15.27009 -14.65588 -14.52285 -14.32633 -14.13629 -13.66542 -13.43406 -13.19325 -12.93970 -12.74052 -12.60667 -12.39199 -12.22549 -11.88323 -11.70083 -11.37206 -11.23395 -10.67836 -10.53516 -9.69954 -9.56837 -9.26459 -8.13425 -6.20617 0.33343 0.39982 1.41735 1.43180 1.54319 2.45370 2.69917 2.93760 3.19492 3.65430 3.71512 3.87790 3.91467 4.01168 4.11184 4.29665 4.39063 4.39673 4.45919 4.60206 4.63968 4.75691 4.87219 4.90460 4.98329 5.07540 5.16667 5.39812 5.46139 5.52905 5.57674 5.73599 5.85181 6.04107 6.13709 6.27286 6.47897 6.79023 6.93740 7.46406 8.98488 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.038883 B = 0.004766 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.935496 B = 5873.436343 C = 6075.475809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.006 4.006 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.047 3.953 10 C 0.147 3.853 11 H 0.070 0.930 12 N -0.827 5.827 13 C -0.118 4.118 14 C -0.127 4.127 15 C -0.117 4.117 16 C -0.095 4.095 17 C -0.128 4.128 18 C -0.120 4.120 19 C 0.104 3.896 20 O -0.394 6.394 21 C 0.054 3.946 22 C -0.110 4.110 23 H 0.260 0.740 24 H -0.011 1.011 25 H -0.012 1.012 26 H 0.340 0.660 27 H 0.338 0.662 28 H 0.121 0.879 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -19.983 1.139 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.009 3.991 10 C 0.035 3.965 11 H 0.088 0.912 12 N -0.356 5.356 13 C -0.120 4.120 14 C -0.146 4.146 15 C -0.135 4.135 16 C -0.096 4.096 17 C -0.128 4.128 18 C -0.139 4.139 19 C 0.028 3.972 20 O -0.313 6.313 21 C -0.022 4.022 22 C -0.147 4.147 23 H 0.069 0.931 24 H 0.007 0.993 25 H 0.006 0.994 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.163 0.837 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.409 -19.128 1.487 19.237 hybrid contribution -0.099 0.491 -0.471 0.688 sum 1.310 -18.637 1.016 18.710 Atomic orbital electron populations 1.70113 1.07735 1.27373 1.52984 1.25934 0.95661 1.03143 0.95473 0.85469 0.78621 0.78796 0.78239 1.20131 1.21100 1.18882 1.21509 0.93483 0.91393 1.48250 0.92031 1.18917 0.93191 0.92581 0.94372 1.20324 0.93612 0.89736 0.92854 0.91164 1.58747 1.18219 1.55260 1.03387 1.21087 0.99289 0.97276 0.94382 1.21062 0.98594 0.96454 0.98458 1.21278 0.99100 0.95190 0.97956 1.19812 0.98961 0.98180 0.92607 1.20455 0.99231 0.96011 0.97138 1.21021 1.00357 0.95104 0.97391 1.21474 0.92163 0.90702 0.92909 1.88040 1.51938 1.42389 1.48946 1.22853 1.02761 0.91633 0.84973 1.21164 1.00007 0.93029 1.00463 0.93138 0.99264 0.99418 0.84672 0.84859 0.86155 0.83744 0.85625 0.87511 0.90018 0.86044 0.91681 0.89847 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.76 13.29 21.45 0.28 -58.48 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.51 -29.46 8.84 25.60 0.23 -29.23 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.05 2.51 4.60 29.85 0.14 2.65 16 10 C 0.15 6.09 2.93 44.17 0.13 6.22 16 11 H 0.07 2.96 8.00 -2.39 -0.02 2.94 16 12 N -0.83 -30.65 8.77 -171.80 -1.51 -32.15 16 13 C -0.12 -4.26 4.94 -19.90 -0.10 -4.35 16 14 C -0.13 -4.13 9.30 22.24 0.21 -3.92 16 15 C -0.12 -3.20 9.67 22.32 0.22 -2.99 16 16 C -0.10 -2.51 5.78 -19.84 -0.11 -2.62 16 17 C -0.13 -3.63 5.80 -19.86 -0.12 -3.75 16 18 C -0.12 -3.92 9.30 22.32 0.21 -3.72 16 19 C 0.10 2.42 6.66 71.22 0.47 2.89 16 20 O -0.39 -9.31 10.80 -148.98 -1.61 -10.92 16 21 C 0.05 0.91 6.85 71.97 0.49 1.40 16 22 C -0.11 -2.03 6.00 29.86 0.18 -1.85 16 23 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 24 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.34 10.40 9.06 -89.69 -0.81 9.58 16 27 H 0.34 12.03 7.35 -89.70 -0.66 11.37 16 28 H 0.12 3.76 6.66 -2.91 -0.02 3.74 16 29 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.13 3.86 8.03 -2.91 -0.02 3.84 16 31 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -69.65 298.13 1.21 -68.44 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.38 Total: 24.34 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 2.40 Total: -39.15 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -1.22 Total: -90.63 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -1.61 Total: -10.92 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -69.65 1.21 -68.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054699.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.876 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds