Wall clock time and date at job start Mon Mar 30 2020 06:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00260 * 2 1 4 4 H 1.48501 * 109.46823 * 269.99482 * 3 2 1 5 5 H 1.48498 * 109.47169 * 29.99187 * 3 2 1 6 6 H 1.48500 * 109.47582 * 149.99882 * 3 2 1 7 7 C 1.37880 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00196 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00003 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47115 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46975 * 304.99878 * 10 9 7 12 12 N 1.46895 * 109.47071 * 64.99952 * 10 9 7 13 13 C 1.50693 * 109.46924 * 185.00005 * 10 9 7 14 14 C 1.38094 * 119.85372 * 264.99991 * 13 10 9 15 15 C 1.38212 * 119.90400 * 179.97438 * 14 13 10 16 16 C 1.38115 * 119.85906 * 0.09195 * 15 14 13 17 17 C 1.38548 * 120.27757 * 0.02562 * 16 15 14 18 18 C 1.37954 * 119.88743 * 359.83931 * 17 16 15 19 19 C 1.50651 * 121.50742 * 180.27374 * 18 17 16 20 20 O 1.42722 * 110.13404 * 344.16933 * 19 18 17 21 21 C 1.42883 * 113.34270 * 51.76419 * 20 19 18 22 22 C 1.50746 * 118.76504 * 179.75648 * 17 16 15 23 23 H 0.97000 * 119.99676 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46885 * 60.00167 * 9 7 2 25 25 H 1.09000 * 109.47177 * 300.00014 * 9 7 2 26 26 H 1.00907 * 110.99952 * 59.99853 * 12 10 9 27 27 H 1.00896 * 111.00216 * 183.95366 * 12 10 9 28 28 H 1.08007 * 120.04781 * 359.95866 * 14 13 10 29 29 H 1.08005 * 120.07374 * 180.11253 * 15 14 13 30 30 H 1.08001 * 119.86302 * 179.97438 * 16 15 14 31 31 H 1.09002 * 109.33956 * 104.33308 * 19 18 17 32 32 H 1.09003 * 109.33955 * 224.00795 * 19 18 17 33 33 H 1.08998 * 109.70742 * 169.51750 * 21 20 19 34 34 H 1.09002 * 109.80602 * 48.96465 * 21 20 19 35 35 H 1.09003 * 109.42440 * 283.21005 * 22 17 16 36 36 H 1.08997 * 109.42468 * 43.10090 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 1 3.5865 -3.1758 0.8425 12 7 3.6333 -3.2931 -1.2545 13 6 5.5233 -2.6385 0.1254 14 6 6.3070 -2.7088 -1.0094 15 6 7.6845 -2.7100 -0.8966 16 6 8.2722 -2.6428 0.3515 17 6 7.4867 -2.5748 1.4908 18 6 6.1118 -2.5707 1.3785 19 6 5.2230 -2.4917 2.5924 20 8 5.9712 -2.7938 3.7696 21 6 7.1689 -2.0244 3.8922 22 6 8.1639 -2.5082 2.8359 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6802 0.8911 25 1 3.8752 -0.6805 -0.8888 26 1 4.0245 -2.8116 -2.0503 27 1 3.9022 -4.2656 -1.2523 28 1 5.8441 -2.7630 -1.9838 29 1 8.3000 -2.7630 -1.7824 30 1 9.3486 -2.6442 0.4398 31 1 4.8122 -1.4853 2.6741 32 1 4.4072 -3.2073 2.4896 33 1 7.5940 -2.1621 4.8863 34 1 6.9480 -0.9691 3.7313 35 1 8.5281 -3.4990 3.1078 36 1 9.0033 -1.8148 2.7852 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:25 Heat of formation + Delta-G solvation = -26.958502 kcal Electronic energy + Delta-G solvation = -18136.012945 eV Core-core repulsion = 15391.445406 eV Total energy + Delta-G solvation = -2744.567539 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36375 -37.73230 -35.70655 -32.70863 -32.09648 -31.51204 -29.02589 -28.78362 -25.43514 -24.51853 -23.72353 -21.61475 -20.21443 -19.25511 -17.09058 -16.64453 -16.37021 -15.66805 -15.31714 -15.15246 -14.36805 -14.18568 -13.86967 -13.54322 -13.39669 -13.06523 -12.73114 -12.48653 -12.17356 -11.78540 -11.71305 -11.35906 -11.19067 -10.85532 -10.65958 -10.21198 -10.13787 -9.78819 -9.54979 -9.13742 -8.48450 -8.46587 -8.32311 -8.02634 -5.95709 -3.91084 1.45144 1.50502 3.32309 3.40201 3.42245 3.82207 3.94640 4.49607 4.66066 4.80625 4.87091 5.05034 5.14165 5.17078 5.19548 5.39446 5.43242 5.45848 5.59585 5.62466 5.70030 5.85843 5.93215 6.05379 6.13257 6.19539 6.43262 6.57170 6.64342 6.76763 7.06269 7.11953 7.21372 7.26863 7.76047 7.90827 8.06888 8.65428 9.16854 9.66336 11.17960 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.007466 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.814954 B = 3749.345923 C = 4226.127156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.002 3.998 10 C 0.137 3.863 11 H 0.087 0.913 12 N -0.819 5.819 13 C -0.093 4.093 14 C -0.129 4.129 15 C -0.115 4.115 16 C -0.133 4.133 17 C -0.076 4.076 18 C -0.112 4.112 19 C 0.097 3.903 20 O -0.377 6.377 21 C 0.057 3.943 22 C -0.112 4.112 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.011 0.989 26 H 0.334 0.666 27 H 0.326 0.674 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.759 -4.967 3.069 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.699 3.301 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.534 4.534 8 H 0.100 0.900 9 C -0.035 4.035 10 C 0.026 3.974 11 H 0.105 0.895 12 N -0.346 5.346 13 C -0.095 4.095 14 C -0.147 4.147 15 C -0.133 4.133 16 C -0.151 4.151 17 C -0.076 4.076 18 C -0.113 4.113 19 C 0.021 3.979 20 O -0.295 6.295 21 C -0.020 4.020 22 C -0.150 4.150 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.029 0.971 26 H 0.148 0.852 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.760 -4.800 3.407 17.764 hybrid contribution 1.687 1.083 -0.600 2.093 sum 18.448 -3.717 2.807 19.026 Atomic orbital electron populations 1.69904 1.06102 1.26494 1.51871 1.24989 0.94671 0.98665 0.95257 0.86925 0.80304 0.84489 0.78382 1.20508 1.21446 1.19368 1.21021 0.88604 0.94638 1.49114 0.90044 1.19598 0.97983 0.89656 0.96300 1.20640 0.84956 0.98866 0.92984 0.89523 1.58764 1.67170 1.05018 1.03677 1.21292 0.99426 0.96617 0.92182 1.20935 0.93631 1.01889 0.98272 1.21008 0.94826 1.00372 0.97130 1.20915 0.99100 1.02930 0.92168 1.19440 0.92800 1.00429 0.94955 1.20076 0.93676 1.01935 0.95627 1.21628 0.92483 1.02665 0.81105 1.87975 1.35836 1.63526 1.42192 1.22535 0.85465 0.95195 0.98783 1.21105 0.98593 1.02656 0.92609 0.92930 0.96361 0.97100 0.85201 0.86251 0.86154 0.86383 0.86540 0.90723 0.87004 0.88615 0.92692 0.90012 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.50 -13.94 9.39 -34.44 -0.32 -14.26 16 8 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 9 C 0.00 0.05 3.65 -27.88 -0.10 -0.05 16 10 C 0.14 2.64 2.39 -68.87 -0.16 2.48 16 11 H 0.09 1.71 6.29 -51.93 -0.33 1.38 16 12 N -0.82 -14.71 8.54 -5.66 -0.05 -14.76 16 13 C -0.09 -1.57 5.05 -104.54 -0.53 -2.10 16 14 C -0.13 -1.94 9.26 -39.64 -0.37 -2.30 16 15 C -0.12 -1.53 10.05 -39.64 -0.40 -1.93 16 16 C -0.13 -1.74 9.67 -39.51 -0.38 -2.12 16 17 C -0.08 -1.09 5.78 -104.59 -0.60 -1.69 16 18 C -0.11 -1.83 5.80 -104.61 -0.61 -2.44 16 19 C 0.10 1.58 5.80 35.98 0.21 1.78 16 20 O -0.38 -5.76 10.77 -35.23 -0.38 -6.14 16 21 C 0.06 0.69 6.84 37.15 0.25 0.94 16 22 C -0.11 -1.28 6.00 -27.87 -0.17 -1.45 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.02 0.43 6.22 -51.93 -0.32 0.11 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 26 H 0.33 5.61 7.20 -39.29 -0.28 5.33 16 27 H 0.33 4.96 9.06 -39.29 -0.36 4.61 16 28 H 0.12 1.64 6.27 -52.48 -0.33 1.32 16 29 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.07 1.28 7.32 -51.93 -0.38 0.90 16 32 H 0.11 1.80 6.53 -51.93 -0.34 1.47 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -31.93 288.03 -8.11 -40.04 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.85 Total: 7.96 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -3.28 Total: -21.36 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.73 Total: -42.04 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.38 Total: -6.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.93 -8.11 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.077 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds