Wall clock time and date at job start Mon Mar 30 2020 06:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00260 * 2 1 4 4 H 1.48501 * 109.46823 * 269.99482 * 3 2 1 5 5 H 1.48498 * 109.47169 * 29.99187 * 3 2 1 6 6 H 1.48500 * 109.47582 * 149.99882 * 3 2 1 7 7 C 1.37880 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00196 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00003 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47115 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46975 * 304.99878 * 10 9 7 12 12 N 1.46895 * 109.47071 * 64.99952 * 10 9 7 13 13 C 1.50693 * 109.46924 * 185.00005 * 10 9 7 14 14 C 1.38094 * 119.85372 * 264.99991 * 13 10 9 15 15 C 1.38212 * 119.90400 * 179.97438 * 14 13 10 16 16 C 1.38115 * 119.85906 * 0.09195 * 15 14 13 17 17 C 1.38548 * 120.27757 * 0.02562 * 16 15 14 18 18 C 1.37954 * 119.88743 * 359.83931 * 17 16 15 19 19 C 1.50651 * 121.50742 * 180.27374 * 18 17 16 20 20 O 1.42722 * 110.13404 * 344.16933 * 19 18 17 21 21 C 1.42883 * 113.34270 * 51.76419 * 20 19 18 22 22 C 1.50746 * 118.76504 * 179.75648 * 17 16 15 23 23 H 0.97000 * 119.99676 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46885 * 60.00167 * 9 7 2 25 25 H 1.09000 * 109.47177 * 300.00014 * 9 7 2 26 26 H 1.00907 * 110.99952 * 59.99853 * 12 10 9 27 27 H 1.00896 * 111.00216 * 183.95366 * 12 10 9 28 28 H 1.08007 * 120.04781 * 359.95866 * 14 13 10 29 29 H 1.08005 * 120.07374 * 180.11253 * 15 14 13 30 30 H 1.08001 * 119.86302 * 179.97438 * 16 15 14 31 31 H 1.09002 * 109.33956 * 104.33308 * 19 18 17 32 32 H 1.09003 * 109.33955 * 224.00795 * 19 18 17 33 33 H 1.08998 * 109.70742 * 169.51750 * 21 20 19 34 34 H 1.09002 * 109.80602 * 48.96465 * 21 20 19 35 35 H 1.09003 * 109.42440 * 283.21005 * 22 17 16 36 36 H 1.08997 * 109.42468 * 43.10090 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 1 3.5865 -3.1758 0.8425 12 7 3.6333 -3.2931 -1.2545 13 6 5.5233 -2.6385 0.1254 14 6 6.3070 -2.7088 -1.0094 15 6 7.6845 -2.7100 -0.8966 16 6 8.2722 -2.6428 0.3515 17 6 7.4867 -2.5748 1.4908 18 6 6.1118 -2.5707 1.3785 19 6 5.2230 -2.4917 2.5924 20 8 5.9712 -2.7938 3.7696 21 6 7.1689 -2.0244 3.8922 22 6 8.1639 -2.5082 2.8359 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6802 0.8911 25 1 3.8752 -0.6805 -0.8888 26 1 4.0245 -2.8116 -2.0503 27 1 3.9022 -4.2656 -1.2523 28 1 5.8441 -2.7630 -1.9838 29 1 8.3000 -2.7630 -1.7824 30 1 9.3486 -2.6442 0.4398 31 1 4.8122 -1.4853 2.6741 32 1 4.4072 -3.2073 2.4896 33 1 7.5940 -2.1621 4.8863 34 1 6.9480 -0.9691 3.7313 35 1 8.5281 -3.4990 3.1078 36 1 9.0033 -1.8148 2.7852 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:24 Heat of formation + Delta-G solvation = -49.127559 kcal Electronic energy + Delta-G solvation = -18136.974268 eV Core-core repulsion = 15391.445406 eV Total energy + Delta-G solvation = -2745.528861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.49159 -38.90091 -37.10649 -34.64812 -33.35933 -32.68650 -30.82585 -29.99606 -26.62468 -26.15918 -24.75190 -23.25997 -21.38915 -20.57727 -18.95601 -17.90116 -17.70003 -16.81586 -16.75272 -16.32334 -16.10125 -15.49499 -15.15543 -14.91608 -14.56831 -14.51442 -14.28342 -13.75642 -13.51175 -13.38770 -13.04720 -12.67180 -12.58700 -12.26238 -12.07856 -11.87120 -11.69332 -11.50123 -11.31631 -10.72965 -10.65575 -9.59796 -9.55080 -9.38785 -8.21917 -6.22020 0.35827 0.38434 1.32925 1.34392 1.45049 2.37088 2.71807 2.88340 3.11347 3.65436 3.70626 3.81978 3.84549 4.00295 4.14512 4.23279 4.28410 4.41336 4.44363 4.57145 4.63134 4.73142 4.76765 4.88162 4.95729 5.04228 5.14189 5.15254 5.33744 5.51217 5.57618 5.64095 5.69356 6.05322 6.11284 6.33788 6.48312 6.75708 6.86821 7.38982 8.95265 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.007466 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.814954 B = 3749.345923 C = 4226.127156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.496 4.496 8 H 0.039 0.961 9 C 0.010 3.990 10 C 0.148 3.852 11 H 0.070 0.930 12 N -0.832 5.832 13 C -0.112 4.112 14 C -0.138 4.138 15 C -0.112 4.112 16 C -0.127 4.127 17 C -0.085 4.085 18 C -0.133 4.133 19 C 0.102 3.898 20 O -0.392 6.392 21 C 0.047 3.953 22 C -0.108 4.108 23 H 0.263 0.737 24 H 0.017 0.983 25 H 0.011 0.989 26 H 0.341 0.659 27 H 0.342 0.658 28 H 0.129 0.871 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.621 -4.442 2.882 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.193 4.193 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.535 4.535 8 H 0.058 0.942 9 C -0.028 4.028 10 C 0.036 3.964 11 H 0.088 0.912 12 N -0.363 5.363 13 C -0.114 4.114 14 C -0.156 4.156 15 C -0.130 4.130 16 C -0.145 4.145 17 C -0.085 4.085 18 C -0.134 4.134 19 C 0.025 3.975 20 O -0.311 6.311 21 C -0.030 4.030 22 C -0.145 4.145 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 20.648 -4.294 3.219 21.334 hybrid contribution 0.513 0.819 -0.521 1.098 sum 21.161 -3.476 2.698 21.614 Atomic orbital electron populations 1.70066 1.08048 1.27615 1.53746 1.25892 0.95501 1.02842 0.95110 0.85809 0.79366 0.79419 0.78913 1.19522 1.21056 1.17727 1.21255 0.91174 0.93013 1.48010 0.94235 1.19447 0.94637 0.92786 0.95902 1.20208 0.87164 0.96049 0.92972 0.91220 1.58671 1.67875 1.06176 1.03533 1.20979 0.97581 0.99359 0.93487 1.21121 0.94686 1.01877 0.97891 1.21399 0.94173 0.98787 0.98664 1.21357 1.00800 1.00876 0.91427 1.19848 0.92047 0.99548 0.97095 1.20155 0.94935 1.03298 0.94982 1.21401 0.92755 1.01142 0.82178 1.87946 1.37204 1.64300 1.41634 1.22860 0.84517 0.94708 1.00871 1.21173 0.98748 1.04072 0.90535 0.92831 0.96514 0.97055 0.84392 0.84493 0.85318 0.83218 0.83061 0.92591 0.88349 0.85710 0.93063 0.88794 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 2 C 0.00 0.13 5.47 84.66 0.46 0.60 16 3 Si 0.94 45.52 27.47 68.60 1.88 47.40 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 7 C -0.50 -28.95 9.39 25.60 0.24 -28.71 16 8 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 9 C 0.01 0.47 3.65 29.85 0.11 0.58 16 10 C 0.15 5.83 2.39 44.17 0.11 5.93 16 11 H 0.07 2.92 6.29 -2.39 -0.02 2.91 16 12 N -0.83 -30.35 8.54 -171.82 -1.47 -31.81 16 13 C -0.11 -3.71 5.05 -19.81 -0.10 -3.81 16 14 C -0.14 -3.84 9.26 22.23 0.21 -3.63 16 15 C -0.11 -2.54 10.05 22.23 0.22 -2.32 16 16 C -0.13 -2.75 9.67 22.31 0.22 -2.54 16 17 C -0.09 -2.19 5.78 -19.84 -0.11 -2.31 16 18 C -0.13 -4.22 5.80 -19.86 -0.12 -4.34 16 19 C 0.10 3.38 5.80 71.22 0.41 3.79 16 20 O -0.39 -11.81 10.77 -148.98 -1.60 -13.41 16 21 C 0.05 1.01 6.84 71.97 0.49 1.50 16 22 C -0.11 -2.07 6.00 29.85 0.18 -1.89 16 23 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 24 H 0.02 0.80 6.22 -2.39 -0.01 0.78 16 25 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 26 H 0.34 11.38 7.20 -89.69 -0.65 10.74 16 27 H 0.34 10.47 9.06 -89.70 -0.81 9.65 16 28 H 0.13 3.27 6.27 -2.91 -0.02 3.25 16 29 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.06 2.01 7.32 -2.39 -0.02 1.99 16 32 H 0.10 3.41 6.53 -2.39 -0.02 3.39 16 33 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.14 8.08 -2.39 -0.02 1.12 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -70.92 288.03 1.02 -69.90 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.41 Total: 25.88 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 2.32 Total: -37.14 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -1.17 Total: -92.62 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.60 Total: -13.41 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -70.92 1.02 -69.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.770 kcal (2) G-P(sol) polarization free energy of solvation -70.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds