Wall clock time and date at job start Mon Mar 30 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38098 * 119.85266 * 99.99972 * 13 10 9 15 15 C 1.38208 * 119.90120 * 180.02562 * 14 13 10 16 16 C 1.38119 * 119.86214 * 0.10584 * 15 14 13 17 17 C 1.38545 * 120.27336 * 359.93507 * 16 15 14 18 18 C 1.37952 * 119.88731 * 359.62452 * 17 16 15 19 19 C 1.50661 * 121.50326 * 180.29915 * 18 17 16 20 20 O 1.42727 * 110.31073 * 344.26111 * 19 18 17 21 21 C 1.43213 * 113.14693 * 51.58907 * 20 19 18 22 22 C 1.50742 * 118.77228 * 179.73047 * 17 16 15 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 27 27 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 28 28 H 1.08004 * 120.04696 * 359.97438 * 14 13 10 29 29 H 1.08000 * 120.07459 * 180.12935 * 15 14 13 30 30 H 1.08001 * 119.86685 * 179.97438 * 16 15 14 31 31 H 1.08996 * 109.47861 * 223.89970 * 19 18 17 32 32 H 1.08995 * 109.01237 * 104.33040 * 19 18 17 33 33 H 1.08989 * 109.63339 * 169.63644 * 21 20 19 34 34 H 1.08999 * 109.79727 * 49.12846 * 21 20 19 35 35 H 1.09004 * 109.42444 * 283.10439 * 22 17 16 36 36 H 1.08998 * 109.42152 * 42.98375 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5904 -3.1773 -0.8317 12 7 3.6277 -3.2908 1.2658 13 6 5.5239 -2.6387 -0.1068 14 6 6.3015 -2.8109 1.0214 15 6 7.6794 -2.8124 0.9148 16 6 8.2739 -2.6395 -0.3198 17 6 7.4946 -2.4658 -1.4521 18 6 6.1190 -2.4732 -1.3475 19 6 5.2367 -2.2944 -2.5556 20 8 5.9928 -1.7743 -3.6487 21 6 7.1839 -2.5232 -3.9162 22 6 8.1788 -2.2738 -2.7814 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 4.0152 -2.8079 2.0625 27 1 2.6236 -3.3597 1.3379 28 1 5.8334 -2.9433 1.9857 29 1 8.2902 -2.9490 1.7950 30 1 9.3507 -2.6403 -0.4031 31 1 4.4276 -1.6046 -2.3158 32 1 4.8166 -3.2606 -2.8346 33 1 7.6171 -2.1969 -4.8616 34 1 6.9476 -3.5860 -3.9691 35 1 8.5584 -1.2543 -2.8498 36 1 9.0082 -2.9758 -2.8669 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:28 Heat of formation + Delta-G solvation = -31.722754 kcal Electronic energy + Delta-G solvation = -18159.766724 eV Core-core repulsion = 15414.992591 eV Total energy + Delta-G solvation = -2744.774132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24040 -37.59136 -35.74765 -32.76490 -32.09574 -31.42601 -29.04973 -28.53701 -25.36711 -24.55809 -23.66994 -21.58009 -20.07338 -19.32479 -17.28704 -16.61692 -16.34043 -15.52935 -15.26783 -14.73806 -14.41967 -14.02516 -13.76945 -13.52789 -13.23565 -13.04627 -12.61747 -12.33317 -12.11559 -11.97148 -11.78028 -11.37661 -11.07221 -10.89132 -10.59269 -10.50397 -10.18426 -9.81869 -9.47763 -9.26854 -8.64684 -8.38486 -8.31970 -7.83408 -6.15304 -4.15527 1.58944 1.65420 3.25906 3.33615 3.37827 3.94727 4.04970 4.36905 4.74649 4.87451 4.96632 5.12772 5.17872 5.22441 5.30044 5.43872 5.50846 5.54299 5.64007 5.72456 5.87830 5.91717 6.04418 6.09459 6.23413 6.38655 6.44348 6.72202 6.75845 6.88045 7.01765 7.18083 7.25234 7.30245 7.63418 7.88026 8.14876 8.38318 8.86771 9.46876 10.97096 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.007610 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.187189 B = 3678.474613 C = 4221.666014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.038 4.038 10 C 0.132 3.868 11 H 0.084 0.916 12 N -0.839 5.839 13 C -0.048 4.048 14 C -0.110 4.110 15 C -0.120 4.120 16 C -0.134 4.134 17 C -0.079 4.079 18 C -0.117 4.117 19 C 0.092 3.908 20 O -0.374 6.374 21 C 0.057 3.943 22 C -0.111 4.111 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.018 0.982 26 H 0.329 0.671 27 H 0.352 0.648 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.895 -5.387 -2.776 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.077 4.077 10 C 0.020 3.980 11 H 0.102 0.898 12 N -0.368 5.368 13 C -0.048 4.048 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.152 4.152 17 C -0.079 4.079 18 C -0.118 4.118 19 C 0.016 3.984 20 O -0.293 6.293 21 C -0.020 4.020 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.141 0.859 27 H 0.167 0.833 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.050 -5.750 -3.166 17.340 hybrid contribution 0.048 1.684 0.514 1.761 sum 16.098 -4.066 -2.652 16.814 Atomic orbital electron populations 1.69901 1.06252 1.27078 1.50242 1.24980 0.94673 0.99116 0.94185 0.86840 0.80319 0.83733 0.78824 1.20010 1.21314 1.19119 1.21020 0.88867 0.94575 1.52033 0.90680 1.20331 0.97640 0.92629 0.97085 1.20329 0.88211 0.95784 0.93635 0.89835 1.59270 1.17654 1.56386 1.03513 1.20050 0.96565 0.96220 0.92007 1.20940 0.93104 1.00034 0.98790 1.21043 0.94966 1.00715 0.97107 1.20886 0.98981 1.02954 0.92402 1.19348 0.92672 1.00823 0.95082 1.20014 0.93714 1.02398 0.95629 1.21734 0.93018 1.00529 0.83103 1.88098 1.36104 1.54519 1.50546 1.22580 0.85891 0.96078 0.97491 1.21077 0.98440 1.02811 0.92526 0.92575 0.96322 0.96414 0.85912 0.83326 0.85576 0.86478 0.86689 0.86003 0.91811 0.88755 0.92835 0.90063 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.53 -14.16 9.10 -34.44 -0.31 -14.47 16 8 H 0.08 2.14 7.39 -52.49 -0.39 1.75 16 9 C -0.04 -0.88 3.43 -27.88 -0.10 -0.97 16 10 C 0.13 2.57 2.35 -68.86 -0.16 2.41 16 11 H 0.08 1.68 7.33 -51.93 -0.38 1.30 16 12 N -0.84 -15.19 8.67 -5.65 -0.05 -15.24 16 13 C -0.05 -0.85 5.09 -104.54 -0.53 -1.39 16 14 C -0.11 -1.78 9.24 -39.64 -0.37 -2.15 16 15 C -0.12 -1.70 10.05 -39.64 -0.40 -2.09 16 16 C -0.13 -1.84 9.67 -39.51 -0.38 -2.23 16 17 C -0.08 -1.19 5.78 -104.59 -0.60 -1.79 16 18 C -0.12 -2.00 5.80 -104.61 -0.61 -2.60 16 19 C 0.09 1.56 5.52 35.99 0.20 1.76 16 20 O -0.37 -6.11 10.80 -35.23 -0.38 -6.49 16 21 C 0.06 0.69 6.84 37.14 0.25 0.95 16 22 C -0.11 -1.33 6.00 -27.88 -0.17 -1.50 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.44 5.63 -51.93 -0.29 0.15 16 25 H 0.02 0.42 7.19 -51.93 -0.37 0.05 16 26 H 0.33 5.58 7.28 -39.29 -0.29 5.30 16 27 H 0.35 6.72 7.90 -39.29 -0.31 6.41 16 28 H 0.13 1.90 6.23 -52.48 -0.33 1.57 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 2.31 5.40 -51.93 -0.28 2.03 16 32 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.09 0.92 8.14 -51.94 -0.42 0.49 16 34 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -30.12 285.41 -8.06 -38.18 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.76 Total: 10.49 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -3.27 Total: -22.11 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.72 Total: -41.31 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.38 Total: -6.49 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.12 -8.06 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.454 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds