Wall clock time and date at job start Mon Mar 30 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38098 * 119.85266 * 99.99972 * 13 10 9 15 15 C 1.38208 * 119.90120 * 180.02562 * 14 13 10 16 16 C 1.38119 * 119.86214 * 0.10584 * 15 14 13 17 17 C 1.38545 * 120.27336 * 359.93507 * 16 15 14 18 18 C 1.37952 * 119.88731 * 359.62452 * 17 16 15 19 19 C 1.50661 * 121.50326 * 180.29915 * 18 17 16 20 20 O 1.42727 * 110.31073 * 344.26111 * 19 18 17 21 21 C 1.43213 * 113.14693 * 51.58907 * 20 19 18 22 22 C 1.50742 * 118.77228 * 179.73047 * 17 16 15 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 27 27 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 28 28 H 1.08004 * 120.04696 * 359.97438 * 14 13 10 29 29 H 1.08000 * 120.07459 * 180.12935 * 15 14 13 30 30 H 1.08001 * 119.86685 * 179.97438 * 16 15 14 31 31 H 1.08996 * 109.47861 * 223.89970 * 19 18 17 32 32 H 1.08995 * 109.01237 * 104.33040 * 19 18 17 33 33 H 1.08989 * 109.63339 * 169.63644 * 21 20 19 34 34 H 1.08999 * 109.79727 * 49.12846 * 21 20 19 35 35 H 1.09004 * 109.42444 * 283.10439 * 22 17 16 36 36 H 1.08998 * 109.42152 * 42.98375 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5904 -3.1773 -0.8317 12 7 3.6277 -3.2908 1.2658 13 6 5.5239 -2.6387 -0.1068 14 6 6.3015 -2.8109 1.0214 15 6 7.6794 -2.8124 0.9148 16 6 8.2739 -2.6395 -0.3198 17 6 7.4946 -2.4658 -1.4521 18 6 6.1190 -2.4732 -1.3475 19 6 5.2367 -2.2944 -2.5556 20 8 5.9928 -1.7743 -3.6487 21 6 7.1839 -2.5232 -3.9162 22 6 8.1788 -2.2738 -2.7814 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 4.0152 -2.8079 2.0625 27 1 2.6236 -3.3597 1.3379 28 1 5.8334 -2.9433 1.9857 29 1 8.2902 -2.9490 1.7950 30 1 9.3507 -2.6403 -0.4031 31 1 4.4276 -1.6046 -2.3158 32 1 4.8166 -3.2606 -2.8346 33 1 7.6171 -2.1969 -4.8616 34 1 6.9476 -3.5860 -3.9691 35 1 8.5584 -1.2543 -2.8498 36 1 9.0082 -2.9758 -2.8669 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:27 Heat of formation + Delta-G solvation = -52.000360 kcal Electronic energy + Delta-G solvation = -18160.646027 eV Core-core repulsion = 15414.992591 eV Total energy + Delta-G solvation = -2745.653435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42185 -38.81474 -37.21420 -34.67183 -33.38367 -32.65477 -30.62895 -29.98317 -26.62012 -26.18374 -24.72268 -23.24605 -21.30133 -20.64694 -19.18704 -17.91132 -17.65641 -16.73979 -16.57413 -16.26273 -15.95304 -15.36816 -15.13980 -14.95111 -14.67822 -14.48372 -14.07934 -13.80481 -13.63248 -13.15470 -13.07197 -12.90743 -12.53472 -12.33671 -12.25429 -11.86281 -11.75351 -11.53686 -11.24152 -10.82924 -10.60493 -9.72066 -9.46805 -9.29676 -8.34787 -6.38157 0.41866 0.48089 1.28789 1.30991 1.40843 2.28943 2.77867 2.94635 3.00376 3.61929 3.76828 3.82847 4.01113 4.05791 4.21576 4.28813 4.32640 4.43248 4.47328 4.59783 4.69498 4.70476 4.78353 4.91843 4.99399 5.08879 5.13502 5.19152 5.33780 5.53510 5.61039 5.63558 5.72496 6.10736 6.16101 6.17980 6.34149 6.64098 6.68747 7.26927 8.80732 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.007610 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.187189 B = 3678.474613 C = 4221.666014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.524 4.524 8 H 0.046 0.954 9 C -0.028 4.028 10 C 0.143 3.857 11 H 0.068 0.932 12 N -0.829 5.829 13 C -0.073 4.073 14 C -0.123 4.123 15 C -0.117 4.117 16 C -0.128 4.128 17 C -0.088 4.088 18 C -0.137 4.137 19 C 0.097 3.903 20 O -0.396 6.396 21 C 0.047 3.953 22 C -0.108 4.108 23 H 0.266 0.734 24 H 0.014 0.986 25 H 0.013 0.987 26 H 0.337 0.663 27 H 0.345 0.655 28 H 0.131 0.869 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.516 -5.295 -2.753 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.562 4.562 8 H 0.065 0.935 9 C -0.067 4.067 10 C 0.031 3.969 11 H 0.086 0.914 12 N -0.358 5.358 13 C -0.073 4.073 14 C -0.142 4.142 15 C -0.135 4.135 16 C -0.145 4.145 17 C -0.088 4.088 18 C -0.138 4.138 19 C 0.021 3.979 20 O -0.315 6.315 21 C -0.029 4.029 22 C -0.145 4.145 23 H 0.075 0.925 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.150 0.850 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.696 -5.670 -3.138 20.735 hybrid contribution -1.022 1.558 0.476 1.924 sum 18.674 -4.112 -2.662 19.305 Atomic orbital electron populations 1.70029 1.07872 1.28026 1.52205 1.25795 0.95401 1.02725 0.94249 0.85864 0.79373 0.79647 0.78992 1.19655 1.20713 1.18060 1.21291 0.90989 0.93390 1.50483 0.93532 1.20213 0.94849 0.95265 0.96399 1.20065 0.90113 0.93174 0.93572 0.91380 1.59256 1.16999 1.56094 1.03486 1.19909 0.95116 0.98929 0.93382 1.21114 0.94336 1.00394 0.98315 1.21427 0.94205 0.99192 0.98685 1.21337 1.00748 1.00864 0.91587 1.19782 0.91913 0.99840 0.97235 1.20120 0.95023 1.03609 0.95031 1.21484 0.92795 0.99687 0.83969 1.88053 1.37714 1.55629 1.50117 1.22921 0.84597 0.96294 0.99080 1.21158 0.98811 1.04081 0.90457 0.92459 0.96751 0.96824 0.84994 0.84224 0.85146 0.83289 0.83080 0.89049 0.91580 0.85990 0.92178 0.89459 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 2 C 0.02 0.95 5.47 84.66 0.46 1.41 16 3 Si 0.94 45.06 27.47 68.60 1.88 46.94 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.26 -11.82 6.54 99.48 0.65 -11.17 16 7 C -0.52 -29.09 9.10 25.60 0.23 -28.86 16 8 H 0.05 2.79 7.39 -2.91 -0.02 2.77 16 9 C -0.03 -1.33 3.43 29.85 0.10 -1.23 16 10 C 0.14 5.70 2.35 44.16 0.10 5.81 16 11 H 0.07 2.88 7.33 -2.39 -0.02 2.86 16 12 N -0.83 -30.53 8.67 -171.80 -1.49 -32.01 16 13 C -0.07 -2.57 5.09 -19.81 -0.10 -2.67 16 14 C -0.12 -3.76 9.24 22.23 0.21 -3.55 16 15 C -0.12 -2.88 10.05 22.23 0.22 -2.65 16 16 C -0.13 -2.96 9.67 22.31 0.22 -2.74 16 17 C -0.09 -2.37 5.78 -19.85 -0.11 -2.49 16 18 C -0.14 -4.58 5.80 -19.86 -0.12 -4.69 16 19 C 0.10 3.34 5.52 71.22 0.39 3.74 16 20 O -0.40 -12.67 10.80 -148.98 -1.61 -14.28 16 21 C 0.05 1.03 6.84 71.97 0.49 1.52 16 22 C -0.11 -2.17 6.00 29.85 0.18 -2.00 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.01 0.69 5.63 -2.38 -0.01 0.68 16 25 H 0.01 0.64 7.19 -2.39 -0.02 0.63 16 26 H 0.34 11.41 7.28 -89.69 -0.65 10.76 16 27 H 0.34 13.62 7.90 -89.69 -0.71 12.92 16 28 H 0.13 3.72 6.23 -2.91 -0.02 3.71 16 29 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.09 3.64 5.40 -2.39 -0.01 3.63 16 32 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 33 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -66.18 285.41 1.05 -65.12 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.31 Total: 30.31 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 2.28 Total: -38.40 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -1.19 Total: -89.70 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.61 Total: -14.28 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -66.18 1.05 -65.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.123 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds