Wall clock time and date at job start Mon Mar 30 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 N 1.46499 * 109.46805 * 119.99792 * 2 1 3 5 5 C 1.38315 * 125.61051 * 299.94329 * 4 2 1 6 6 C 1.39915 * 125.69241 * 0.07700 * 5 4 2 7 7 H 1.07992 * 120.00144 * 352.78969 * 6 5 4 8 8 C 1.40190 * 119.99579 * 172.79736 * 6 5 4 9 9 N 1.30747 * 120.00432 * 6.84087 * 8 6 5 10 10 Si 1.86808 * 119.99772 * 186.84338 * 8 6 5 11 11 H 1.48494 * 109.46993 * 94.98579 * 10 8 6 12 12 H 1.48498 * 109.46789 * 214.98915 * 10 8 6 13 13 H 1.48500 * 109.46886 * 334.98343 * 10 8 6 14 14 C 1.39138 * 108.60906 * 180.02562 * 5 4 2 15 15 C 1.40925 * 107.51338 * 0.02562 * 14 5 4 16 16 C 1.40506 * 133.06347 * 180.02562 * 15 14 5 17 17 C 1.36597 * 119.78600 * 179.97438 * 16 15 14 18 18 F 1.35096 * 119.72830 * 180.02562 * 17 16 15 19 19 C 1.39139 * 120.54479 * 359.97438 * 17 16 15 20 20 C 1.37952 * 120.66986 * 359.81610 * 19 17 16 21 21 C 1.38142 * 125.61318 * 120.00809 * 4 2 1 22 22 H 1.08992 * 109.47558 * 300.00182 * 1 2 3 23 23 H 1.09007 * 109.47182 * 60.00542 * 1 2 3 24 24 H 1.09002 * 109.46831 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47732 * 239.99540 * 2 1 3 26 26 H 1.08999 * 109.47150 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47247 * 299.99636 * 3 2 1 28 28 H 1.09001 * 109.47713 * 59.99528 * 3 2 1 29 29 H 0.97002 * 120.00327 * 180.02562 * 9 8 6 30 30 H 1.07992 * 126.23805 * 180.02562 * 14 5 4 31 31 H 1.07998 * 120.10908 * 0.02562 * 16 15 14 32 32 H 1.07994 * 119.66377 * 180.02562 * 19 17 16 33 33 H 1.08004 * 120.03634 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.7574 -0.3199 2.5030 6 6 0.9830 0.7750 2.9019 7 1 0.6264 1.4808 2.1664 8 6 0.6702 0.9559 4.2564 9 7 1.2099 0.1816 5.1611 10 14 -0.5181 2.3033 4.7687 11 1 -1.8849 1.7366 4.8938 12 1 -0.0940 2.8665 6.0756 13 1 -0.5196 3.3778 3.7437 14 6 2.3928 -1.2182 3.3546 15 6 3.0610 -2.1639 2.5513 16 6 3.8535 -3.2856 2.8479 17 6 4.3802 -4.0320 1.8324 18 9 5.1416 -5.1106 2.1189 19 6 4.1382 -3.6912 0.5053 20 6 3.3596 -2.5968 0.1905 21 6 2.8159 -1.8184 1.2047 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 0.9931 0.3065 6.0983 30 1 2.3768 -1.1949 4.4341 31 1 4.0449 -3.5573 3.8755 32 1 4.5613 -4.2916 -0.2864 33 1 3.1787 -2.3413 -0.8431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261061777.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:12 Heat of formation + Delta-G solvation = -5.705179 kcal Electronic energy + Delta-G solvation = -17764.164286 eV Core-core repulsion = 14897.058055 eV Total energy + Delta-G solvation = -2867.106231 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.91229 -40.00457 -36.23638 -34.28041 -33.13863 -30.35064 -28.63085 -27.30612 -26.76528 -25.30236 -21.85492 -21.32326 -20.34816 -18.77475 -17.11797 -16.43043 -15.96578 -15.32197 -14.73534 -14.64487 -13.91741 -13.78997 -13.77244 -12.91582 -12.72560 -12.25133 -12.20472 -12.09192 -11.73260 -11.72188 -11.44000 -11.17053 -11.08820 -10.90995 -10.89386 -10.37212 -10.10747 -9.78273 -9.55487 -9.33527 -8.53603 -7.10583 -6.82884 -6.44155 -4.49419 2.14618 2.55935 2.90049 2.94564 2.97818 3.69243 3.96071 4.02482 4.85673 5.21888 5.23092 5.36234 5.55539 5.58864 5.70564 5.87632 5.95455 6.04344 6.17486 6.26521 6.32729 6.50699 6.56660 6.68538 6.75247 6.91214 6.96630 7.11927 7.27117 7.50934 7.66175 7.72616 7.89616 8.20836 8.53568 8.63692 8.85911 9.05377 10.01493 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.007944 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.523026 B = 3523.996756 C = 4465.466927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 C -0.169 4.169 4 N -0.507 5.507 5 C 0.277 3.723 6 C -0.439 4.439 7 H 0.087 0.913 8 C 0.072 3.928 9 N -0.771 5.771 10 Si 0.923 3.077 11 H -0.268 1.268 12 H -0.274 1.274 13 H -0.261 1.261 14 C -0.325 4.325 15 C -0.022 4.022 16 C -0.174 4.174 17 C 0.074 3.926 18 F -0.164 7.164 19 C -0.217 4.217 20 C -0.090 4.090 21 C 0.033 3.967 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.282 0.718 30 H 0.165 0.835 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 2.065 -5.570 6.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.047 3.953 3 C -0.227 4.227 4 N -0.198 5.198 5 C 0.172 3.828 6 C -0.471 4.471 7 H 0.105 0.895 8 C -0.149 4.149 9 N -0.396 5.396 10 Si 0.747 3.253 11 H -0.193 1.193 12 H -0.199 1.199 13 H -0.185 1.185 14 C -0.348 4.348 15 C -0.027 4.027 16 C -0.194 4.194 17 C 0.053 3.947 18 F -0.144 7.144 19 C -0.237 4.237 20 C -0.112 4.112 21 C -0.070 4.070 22 H 0.100 0.900 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.182 0.818 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.625 2.147 -5.551 6.169 hybrid contribution -0.331 0.285 0.186 0.475 sum -1.956 2.432 -5.364 6.206 Atomic orbital electron populations 1.22242 0.95000 1.02422 1.02902 1.20832 0.94429 0.93049 0.86953 1.22289 1.01424 0.96073 1.02915 1.44430 1.45900 1.24087 1.05345 1.18117 0.91933 0.93440 0.79294 1.18907 1.28013 1.07073 0.93149 0.89507 1.25855 0.95999 0.96969 0.96032 1.69715 1.34057 1.33138 1.02672 0.86043 0.80102 0.80226 0.78933 1.19278 1.19878 1.18495 1.21764 1.12600 1.00466 0.99945 1.18230 0.96996 0.94737 0.92750 1.20004 1.04125 0.97793 0.97480 1.16950 0.97175 0.86727 0.93814 1.91352 1.74493 1.53920 1.94587 1.20096 1.07962 1.01711 0.93907 1.19501 1.00025 0.95559 0.96112 1.18240 1.01312 0.92203 0.95205 0.90044 0.92429 0.92709 0.90678 0.92693 0.92370 0.90083 0.90621 0.81762 0.86863 0.87043 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.18 37.16 0.34 -2.39 16 2 C 0.15 2.68 3.41 -67.93 -0.23 2.45 16 3 C -0.17 -2.75 9.18 37.16 0.34 -2.41 16 4 N -0.51 -11.33 2.70 -104.46 -0.28 -11.61 16 5 C 0.28 6.89 6.22 -83.98 -0.52 6.37 16 6 C -0.44 -10.34 7.33 -38.22 -0.28 -10.62 16 7 H 0.09 1.88 4.40 -52.49 -0.23 1.65 16 8 C 0.07 1.65 5.49 -17.28 -0.09 1.56 16 9 N -0.77 -18.60 10.22 55.56 0.57 -18.03 16 10 Si 0.92 17.07 29.57 -169.99 -5.03 12.04 16 11 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 12 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 13 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 14 C -0.33 -8.59 9.80 -38.23 -0.37 -8.96 16 15 C -0.02 -0.55 6.14 -106.91 -0.66 -1.20 16 16 C -0.17 -4.06 10.04 -39.32 -0.39 -4.45 16 17 C 0.07 1.61 7.24 -39.84 -0.29 1.32 16 18 F -0.16 -3.43 17.25 2.25 0.04 -3.39 16 19 C -0.22 -4.41 10.00 -39.35 -0.39 -4.80 16 20 C -0.09 -1.86 9.81 -39.43 -0.39 -2.25 16 21 C 0.03 0.77 6.81 -83.65 -0.57 0.20 16 22 H 0.08 1.45 5.61 -51.93 -0.29 1.16 16 23 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 1.22 7.34 -51.93 -0.38 0.84 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.44 5.33 -51.93 -0.28 1.17 16 29 H 0.28 6.16 8.29 -40.82 -0.34 5.83 16 30 H 0.17 4.52 5.62 -52.49 -0.30 4.22 16 31 H 0.11 2.49 8.06 -52.49 -0.42 2.06 16 32 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.10 1.82 7.54 -52.48 -0.40 1.43 16 LS Contribution 274.55 15.07 4.14 4.14 Total: -1.00 -26.32 274.55 -7.62 -33.94 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.54 Total: 8.10 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -3.51 Total: -25.19 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: 0.29 Total: -29.64 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.04 Total: -3.39 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.32 -7.62 -33.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061777.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.235 kcal (2) G-P(sol) polarization free energy of solvation -26.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds