Wall clock time and date at job start Mon Mar 30 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 N 1.46499 * 109.46805 * 119.99792 * 2 1 3 5 5 C 1.38315 * 125.61051 * 299.94329 * 4 2 1 6 6 C 1.39915 * 125.69241 * 0.07700 * 5 4 2 7 7 H 1.07992 * 120.00144 * 352.78969 * 6 5 4 8 8 C 1.40190 * 119.99579 * 172.79736 * 6 5 4 9 9 N 1.30747 * 120.00432 * 6.84087 * 8 6 5 10 10 Si 1.86808 * 119.99772 * 186.84338 * 8 6 5 11 11 H 1.48494 * 109.46993 * 94.98579 * 10 8 6 12 12 H 1.48498 * 109.46789 * 214.98915 * 10 8 6 13 13 H 1.48500 * 109.46886 * 334.98343 * 10 8 6 14 14 C 1.39138 * 108.60906 * 180.02562 * 5 4 2 15 15 C 1.40925 * 107.51338 * 0.02562 * 14 5 4 16 16 C 1.40506 * 133.06347 * 180.02562 * 15 14 5 17 17 C 1.36597 * 119.78600 * 179.97438 * 16 15 14 18 18 F 1.35096 * 119.72830 * 180.02562 * 17 16 15 19 19 C 1.39139 * 120.54479 * 359.97438 * 17 16 15 20 20 C 1.37952 * 120.66986 * 359.81610 * 19 17 16 21 21 C 1.38142 * 125.61318 * 120.00809 * 4 2 1 22 22 H 1.08992 * 109.47558 * 300.00182 * 1 2 3 23 23 H 1.09007 * 109.47182 * 60.00542 * 1 2 3 24 24 H 1.09002 * 109.46831 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47732 * 239.99540 * 2 1 3 26 26 H 1.08999 * 109.47150 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47247 * 299.99636 * 3 2 1 28 28 H 1.09001 * 109.47713 * 59.99528 * 3 2 1 29 29 H 0.97002 * 120.00327 * 180.02562 * 9 8 6 30 30 H 1.07992 * 126.23805 * 180.02562 * 14 5 4 31 31 H 1.07998 * 120.10908 * 0.02562 * 16 15 14 32 32 H 1.07994 * 119.66377 * 180.02562 * 19 17 16 33 33 H 1.08004 * 120.03634 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.7574 -0.3199 2.5030 6 6 0.9830 0.7750 2.9019 7 1 0.6264 1.4808 2.1664 8 6 0.6702 0.9559 4.2564 9 7 1.2099 0.1816 5.1611 10 14 -0.5181 2.3033 4.7687 11 1 -1.8849 1.7366 4.8938 12 1 -0.0940 2.8665 6.0756 13 1 -0.5196 3.3778 3.7437 14 6 2.3928 -1.2182 3.3546 15 6 3.0610 -2.1639 2.5513 16 6 3.8535 -3.2856 2.8479 17 6 4.3802 -4.0320 1.8324 18 9 5.1416 -5.1106 2.1189 19 6 4.1382 -3.6912 0.5053 20 6 3.3596 -2.5968 0.1905 21 6 2.8159 -1.8184 1.2047 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 0.9931 0.3065 6.0983 30 1 2.3768 -1.1949 4.4341 31 1 4.0449 -3.5573 3.8755 32 1 4.5613 -4.2916 -0.2864 33 1 3.1787 -2.3413 -0.8431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261061777.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:12 Heat of formation + Delta-G solvation = -17.704618 kcal Electronic energy + Delta-G solvation = -17764.684621 eV Core-core repulsion = 14897.058055 eV Total energy + Delta-G solvation = -2867.626565 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.61780 -41.71093 -37.87142 -35.91685 -34.77348 -32.04732 -30.40282 -28.98848 -28.03407 -27.07168 -23.46543 -22.99096 -22.07891 -20.44969 -18.83977 -18.10682 -17.59984 -17.03260 -16.37365 -16.35354 -15.38881 -15.34842 -15.31845 -14.53672 -14.24471 -13.91329 -13.82646 -13.66803 -13.32521 -13.07764 -12.89756 -12.83326 -12.72004 -12.36122 -12.28634 -11.87050 -11.70618 -11.49257 -11.18364 -11.01302 -10.30100 -8.88566 -8.55151 -8.20259 -6.33451 0.41584 0.82173 1.41126 1.42286 1.56422 2.13614 2.22259 2.43723 3.11655 3.40426 3.64841 3.88464 3.98856 4.23286 4.28100 4.31849 4.56056 4.75322 4.79418 4.82112 4.85534 4.95457 5.03674 5.11100 5.23121 5.38992 5.40345 5.43484 5.54228 5.76651 5.89077 5.97238 6.12556 6.40737 6.74649 6.76074 7.09113 7.27975 8.32066 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.007944 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.523026 B = 3523.996756 C = 4465.466927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 C -0.162 4.162 4 N -0.507 5.507 5 C 0.263 3.737 6 C -0.454 4.454 7 H 0.104 0.896 8 C 0.027 3.973 9 N -0.808 5.808 10 Si 0.996 3.004 11 H -0.264 1.264 12 H -0.272 1.272 13 H -0.247 1.247 14 C -0.375 4.375 15 C -0.054 4.054 16 C -0.195 4.195 17 C 0.068 3.932 18 F -0.159 7.159 19 C -0.203 4.203 20 C -0.084 4.084 21 C 0.019 3.981 22 H 0.061 0.939 23 H 0.097 0.903 24 H 0.043 0.957 25 H 0.098 0.902 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.287 0.713 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 2.932 -8.333 9.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C -0.220 4.220 4 N -0.197 5.197 5 C 0.157 3.843 6 C -0.486 4.486 7 H 0.122 0.878 8 C -0.190 4.190 9 N -0.433 5.433 10 Si 0.816 3.184 11 H -0.189 1.189 12 H -0.197 1.197 13 H -0.170 1.170 14 C -0.398 4.398 15 C -0.059 4.059 16 C -0.215 4.215 17 C 0.048 3.952 18 F -0.138 7.138 19 C -0.223 4.223 20 C -0.105 4.105 21 C -0.084 4.084 22 H 0.080 0.920 23 H 0.116 0.884 24 H 0.062 0.938 25 H 0.116 0.884 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.158 0.842 31 H 0.127 0.873 32 H 0.167 0.833 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.300 3.006 -8.345 9.163 hybrid contribution -0.039 -0.088 1.000 1.005 sum -2.339 2.918 -7.345 8.242 Atomic orbital electron populations 1.22191 0.93814 1.02034 1.03859 1.21286 0.95467 0.93765 0.85813 1.22230 1.00729 0.95184 1.03838 1.44670 1.45382 1.23875 1.05786 1.18322 0.91922 0.93576 0.80482 1.19302 1.28054 1.07199 0.94090 0.87797 1.26921 0.97259 0.99050 0.95776 1.69855 1.35391 1.34832 1.03235 0.84956 0.77409 0.77332 0.78689 1.18931 1.19676 1.16991 1.21719 1.15578 1.02961 0.99509 1.18455 0.97974 0.95387 0.94076 1.20113 1.04971 0.98272 0.98103 1.17085 0.97092 0.86680 0.94346 1.91363 1.74250 1.53500 1.94667 1.20542 1.06473 1.01365 0.93893 1.19906 0.98695 0.94584 0.97320 1.18617 1.01735 0.92976 0.95108 0.92026 0.88415 0.93771 0.88391 0.93710 0.88371 0.92090 0.90197 0.84199 0.87295 0.83320 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 9.18 71.98 0.66 -4.19 16 2 C 0.14 4.59 3.41 44.99 0.15 4.74 16 3 C -0.16 -4.86 9.18 71.98 0.66 -4.20 16 4 N -0.51 -22.53 2.70 -484.39 -1.31 -23.84 16 5 C 0.26 13.53 6.22 38.74 0.24 13.77 16 6 C -0.45 -21.80 7.33 23.15 0.17 -21.63 16 7 H 0.10 4.47 4.40 -2.91 -0.01 4.45 16 8 C 0.03 1.26 5.49 85.33 0.47 1.73 16 9 N -0.81 -40.97 10.22 21.87 0.22 -40.74 16 10 Si 1.00 34.89 29.57 68.60 2.03 36.92 16 11 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 12 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 13 H -0.25 -8.01 7.11 99.48 0.71 -7.30 16 14 C -0.37 -21.05 9.80 23.14 0.23 -20.83 16 15 C -0.05 -2.80 6.14 -21.35 -0.13 -2.93 16 16 C -0.19 -9.37 10.04 22.44 0.23 -9.15 16 17 C 0.07 2.93 7.24 22.10 0.16 3.09 16 18 F -0.16 -6.43 17.25 44.97 0.78 -5.65 16 19 C -0.20 -7.66 10.00 22.42 0.22 -7.43 16 20 C -0.08 -3.22 9.81 22.37 0.22 -3.00 16 21 C 0.02 0.87 6.81 39.03 0.27 1.14 16 22 H 0.06 2.10 5.61 -2.39 -0.01 2.09 16 23 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.10 2.79 7.34 -2.39 -0.02 2.78 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.08 5.33 -2.39 -0.01 2.07 16 29 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 30 H 0.14 8.38 5.62 -2.91 -0.02 8.36 16 31 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 32 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.14 4.32 7.54 -2.91 -0.02 4.30 16 Total: -1.00 -59.88 274.55 6.40 -53.48 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 1.13 Total: 28.71 kcal Atomic # 6 Polarization: -52.42 SS G_CDS: 3.54 Total: -48.88 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -1.08 Total: -64.58 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.78 Total: -5.65 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Total: -59.88 6.40 -53.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061777.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.780 kcal (2) G-P(sol) polarization free energy of solvation -59.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds