Wall clock time and date at job start Mon Mar 30 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48505 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47012 * 299.99759 * 3 2 1 6 6 H 1.48498 * 109.47373 * 59.99378 * 3 2 1 7 7 C 1.37877 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99796 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47066 * 299.99884 * 9 7 2 11 11 N 1.46903 * 109.47128 * 59.99979 * 9 7 2 12 12 C 1.50701 * 109.46916 * 179.97438 * 9 7 2 13 13 C 1.38164 * 120.02697 * 264.99969 * 12 9 7 14 14 C 1.38243 * 120.05688 * 180.02562 * 13 12 9 15 15 C 1.38285 * 120.11029 * 359.97302 * 14 13 12 16 16 C 1.38120 * 120.05713 * 0.02618 * 15 14 13 17 17 C 1.38705 * 120.02906 * 84.72213 * 12 9 7 18 18 O 1.35898 * 120.05782 * 359.97438 * 17 12 9 19 19 C 1.42897 * 117.00557 * 185.79949 * 18 17 12 20 20 C 1.53784 * 113.61678 * 255.34436 * 19 18 17 21 21 C 1.53779 * 87.08034 * 220.01661 * 20 19 18 22 22 C 1.53777 * 113.61710 * 157.84258 * 19 18 17 23 23 H 0.96998 * 119.99690 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99657 * 296.04549 * 11 9 7 25 25 H 1.00893 * 111.00227 * 59.99715 * 11 9 7 26 26 H 1.07997 * 119.97537 * 359.97438 * 13 12 9 27 27 H 1.08002 * 119.94319 * 179.97438 * 14 13 12 28 28 H 1.08000 * 119.97295 * 179.97438 * 15 14 13 29 29 H 1.08005 * 120.02917 * 179.97438 * 16 15 14 30 30 H 1.08997 * 112.84726 * 26.64760 * 19 18 17 31 31 H 1.08994 * 113.60889 * 334.56251 * 20 19 18 32 32 H 1.08994 * 113.61107 * 105.46890 * 20 19 18 33 33 H 1.09006 * 113.61960 * 270.88425 * 21 20 19 34 34 H 1.08997 * 113.61785 * 139.97666 * 21 20 19 35 35 H 1.09004 * 113.61909 * 254.53256 * 22 19 18 36 36 H 1.09004 * 113.61338 * 25.35346 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1992 12 6 2.2305 -3.6446 0.0005 13 6 2.6005 -4.2378 -1.1911 14 6 3.4984 -5.2889 -1.1918 15 6 4.0289 -5.7489 -0.0005 16 6 3.6622 -5.1593 1.1935 17 6 2.7655 -4.1004 1.1963 18 8 2.4078 -3.5145 2.3692 19 6 3.0919 -3.9485 3.5464 20 6 2.2502 -4.8718 4.4430 21 6 2.8468 -4.1190 5.6439 22 6 3.0511 -2.9265 4.6947 23 1 -0.4849 0.8400 -0.0004 24 1 -0.3003 -1.8577 -1.1911 25 1 0.9653 -2.5260 -2.0381 26 1 2.1873 -3.8807 -2.1228 27 1 3.7861 -5.7516 -2.1243 28 1 4.7299 -6.5705 -0.0035 29 1 4.0765 -5.5192 2.1237 30 1 4.0908 -4.3318 3.3383 31 1 1.1755 -4.7299 4.3290 32 1 2.5477 -5.9191 4.3926 33 1 3.7786 -4.5500 6.0103 34 1 2.1272 -3.9256 6.4394 35 1 3.9952 -2.4034 4.8475 36 1 2.1961 -2.2519 4.6487 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:20 Heat of formation + Delta-G solvation = 6.434879 kcal Electronic energy + Delta-G solvation = -18078.615857 eV Core-core repulsion = 15335.496363 eV Total energy + Delta-G solvation = -2743.119493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90498 -38.14474 -35.66811 -34.58870 -31.56221 -29.34934 -29.01565 -25.87375 -25.53654 -25.09047 -22.96105 -21.44836 -20.13935 -19.12444 -17.78935 -16.44189 -15.88189 -15.37416 -14.97806 -14.58825 -14.28294 -14.10121 -13.63248 -13.35457 -12.78909 -12.31559 -12.14868 -11.99118 -11.72995 -11.49268 -11.29914 -11.11644 -10.99192 -10.82167 -10.59453 -10.35730 -10.19280 -9.96533 -9.93133 -9.42077 -8.59323 -8.06864 -7.41843 -7.07669 -5.99769 -4.14535 2.07903 2.18030 3.25265 3.33659 3.38997 3.86623 4.36166 4.53796 4.69084 4.72095 4.94608 4.96349 5.21499 5.33973 5.42830 5.56416 5.70860 5.74455 5.88716 5.91862 5.99008 6.06738 6.18343 6.22550 6.37583 6.50302 6.67140 6.75622 7.04252 7.05996 7.27877 7.56441 7.80778 7.83359 8.18567 8.23463 8.76994 9.01582 9.18704 9.55108 10.97926 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.009064 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.632333 B = 3088.344361 C = 4218.290443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.248 3.752 10 H 0.053 0.947 11 N -0.852 5.852 12 C -0.058 4.058 13 C -0.079 4.079 14 C -0.164 4.164 15 C -0.111 4.111 16 C -0.217 4.217 17 C 0.125 3.875 18 O -0.281 6.281 19 C 0.054 3.946 20 C -0.157 4.157 21 C -0.141 4.141 22 C -0.131 4.131 23 H 0.263 0.737 24 H 0.355 0.645 25 H 0.309 0.691 26 H 0.126 0.874 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -8.737 5.800 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.138 3.862 10 H 0.071 0.929 11 N -0.382 5.382 12 C -0.059 4.059 13 C -0.098 4.098 14 C -0.182 4.182 15 C -0.129 4.129 16 C -0.236 4.236 17 C 0.079 3.921 18 O -0.193 6.193 19 C -0.003 4.003 20 C -0.194 4.194 21 C -0.178 4.178 22 C -0.168 4.168 23 H 0.073 0.927 24 H 0.172 0.828 25 H 0.119 0.881 26 H 0.144 0.856 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.751 -9.182 6.128 12.447 hybrid contribution 1.123 1.759 -0.100 2.090 sum 6.875 -7.423 6.028 11.777 Atomic orbital electron populations 1.69758 1.05753 1.26816 1.51190 1.24988 0.94908 0.99098 0.94704 0.86508 0.80175 0.83567 0.77564 1.19847 1.21051 1.20937 1.21784 0.93450 0.90956 1.50678 0.92894 1.17802 0.88975 0.87820 0.91599 0.92920 1.59582 1.18497 1.56049 1.04035 1.19943 0.98846 0.97695 0.89395 1.20819 0.96117 0.95007 0.97836 1.20935 1.00523 0.99446 0.97343 1.20631 1.00259 0.99786 0.92268 1.21044 1.03695 1.00189 0.98694 1.18880 0.94923 0.92173 0.86093 1.86338 1.59155 1.60970 1.12877 1.24015 0.96074 0.96671 0.83528 1.23506 1.01494 0.98735 0.95689 1.22649 1.01162 0.97417 0.96607 1.23154 1.03418 0.96983 0.93281 0.92699 0.82841 0.88099 0.85602 0.87081 0.87178 0.86584 0.88984 0.88934 0.91406 0.90193 0.90734 0.90944 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 11.54 55.43 0.64 -24.60 16 2 C 0.06 1.78 5.38 -17.82 -0.10 1.69 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.53 -14.71 8.71 -34.44 -0.30 -15.01 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.25 6.45 2.67 -70.01 -0.19 6.26 16 10 H 0.05 1.55 7.70 -51.93 -0.40 1.15 16 11 N -0.85 -20.86 8.79 -6.65 -0.06 -20.92 16 12 C -0.06 -1.32 5.01 -104.48 -0.52 -1.85 16 13 C -0.08 -1.61 9.27 -39.61 -0.37 -1.98 16 14 C -0.16 -2.85 10.04 -39.56 -0.40 -3.25 16 15 C -0.11 -1.84 10.04 -39.61 -0.40 -2.24 16 16 C -0.22 -3.86 9.01 -39.43 -0.36 -4.21 16 17 C 0.12 2.64 6.65 -39.22 -0.26 2.38 16 18 O -0.28 -5.89 9.29 -19.42 -0.18 -6.08 16 19 C 0.05 0.85 3.63 -25.92 -0.09 0.76 16 20 C -0.16 -2.07 7.91 -25.92 -0.21 -2.27 16 21 C -0.14 -1.57 8.08 -25.92 -0.21 -1.78 16 22 C -0.13 -1.82 7.91 -25.92 -0.21 -2.03 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.36 9.29 7.08 -39.29 -0.28 9.01 16 25 H 0.31 7.11 7.20 -39.30 -0.28 6.82 16 26 H 0.13 2.44 6.29 -52.49 -0.33 2.11 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.12 1.74 5.96 -52.48 -0.31 1.43 16 30 H 0.09 1.32 6.05 -51.93 -0.31 1.00 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 296.07 15.07 4.46 4.46 Total: -1.00 -29.43 296.07 -8.60 -38.02 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -4.84 Total: 16.13 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -3.60 Total: -23.51 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.58 Total: -45.51 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.18 Total: -6.08 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.43 -8.60 -38.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.458 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds