Wall clock time and date at job start Mon Mar 30 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48505 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47012 * 299.99759 * 3 2 1 6 6 H 1.48498 * 109.47373 * 59.99378 * 3 2 1 7 7 C 1.37877 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99796 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47066 * 299.99884 * 9 7 2 11 11 N 1.46903 * 109.47128 * 59.99979 * 9 7 2 12 12 C 1.50701 * 109.46916 * 179.97438 * 9 7 2 13 13 C 1.38164 * 120.02697 * 264.99969 * 12 9 7 14 14 C 1.38243 * 120.05688 * 180.02562 * 13 12 9 15 15 C 1.38285 * 120.11029 * 359.97302 * 14 13 12 16 16 C 1.38120 * 120.05713 * 0.02618 * 15 14 13 17 17 C 1.38705 * 120.02906 * 84.72213 * 12 9 7 18 18 O 1.35898 * 120.05782 * 359.97438 * 17 12 9 19 19 C 1.42897 * 117.00557 * 185.79949 * 18 17 12 20 20 C 1.53784 * 113.61678 * 255.34436 * 19 18 17 21 21 C 1.53779 * 87.08034 * 220.01661 * 20 19 18 22 22 C 1.53777 * 113.61710 * 157.84258 * 19 18 17 23 23 H 0.96998 * 119.99690 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99657 * 296.04549 * 11 9 7 25 25 H 1.00893 * 111.00227 * 59.99715 * 11 9 7 26 26 H 1.07997 * 119.97537 * 359.97438 * 13 12 9 27 27 H 1.08002 * 119.94319 * 179.97438 * 14 13 12 28 28 H 1.08000 * 119.97295 * 179.97438 * 15 14 13 29 29 H 1.08005 * 120.02917 * 179.97438 * 16 15 14 30 30 H 1.08997 * 112.84726 * 26.64760 * 19 18 17 31 31 H 1.08994 * 113.60889 * 334.56251 * 20 19 18 32 32 H 1.08994 * 113.61107 * 105.46890 * 20 19 18 33 33 H 1.09006 * 113.61960 * 270.88425 * 21 20 19 34 34 H 1.08997 * 113.61785 * 139.97666 * 21 20 19 35 35 H 1.09004 * 113.61909 * 254.53256 * 22 19 18 36 36 H 1.09004 * 113.61338 * 25.35346 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1992 12 6 2.2305 -3.6446 0.0005 13 6 2.6005 -4.2378 -1.1911 14 6 3.4984 -5.2889 -1.1918 15 6 4.0289 -5.7489 -0.0005 16 6 3.6622 -5.1593 1.1935 17 6 2.7655 -4.1004 1.1963 18 8 2.4078 -3.5145 2.3692 19 6 3.0919 -3.9485 3.5464 20 6 2.2502 -4.8718 4.4430 21 6 2.8468 -4.1190 5.6439 22 6 3.0511 -2.9265 4.6947 23 1 -0.4849 0.8400 -0.0004 24 1 -0.3003 -1.8577 -1.1911 25 1 0.9653 -2.5260 -2.0381 26 1 2.1873 -3.8807 -2.1228 27 1 3.7861 -5.7516 -2.1243 28 1 4.7299 -6.5705 -0.0035 29 1 4.0765 -5.5192 2.1237 30 1 4.0908 -4.3318 3.3383 31 1 1.1755 -4.7299 4.3290 32 1 2.5477 -5.9191 4.3926 33 1 3.7786 -4.5500 6.0103 34 1 2.1272 -3.9256 6.4394 35 1 3.9952 -2.4034 4.8475 36 1 2.1961 -2.2519 4.6487 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261062162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:19 Heat of formation + Delta-G solvation = -11.960206 kcal Electronic energy + Delta-G solvation = -18079.413527 eV Core-core repulsion = 15335.496363 eV Total energy + Delta-G solvation = -2743.917164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27438 -39.45578 -37.03374 -36.48033 -33.56036 -30.87354 -30.61825 -27.92299 -26.63085 -26.24412 -24.72502 -22.82237 -21.73965 -20.34665 -19.19377 -18.58724 -17.39793 -16.72098 -16.44511 -16.23869 -15.76058 -15.66188 -15.04326 -14.80209 -14.71448 -13.82742 -13.59979 -13.44503 -13.16986 -13.00025 -12.94330 -12.81674 -12.50513 -12.34886 -12.14069 -11.92031 -11.79719 -11.42363 -11.17487 -11.06827 -10.71024 -9.58785 -9.24107 -8.82369 -8.08982 -6.34731 0.61697 0.72019 1.32623 1.34696 1.46594 2.35683 2.55496 3.05152 3.07033 3.60590 3.63801 3.83980 3.88574 4.07063 4.16287 4.33082 4.36737 4.54686 4.71912 4.77867 4.79317 4.84991 4.93741 4.97551 5.02598 5.14634 5.16177 5.38730 5.44945 5.60069 5.64195 5.77282 5.91903 6.05280 6.17907 6.66799 6.80804 6.93428 7.12021 7.39759 8.84617 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.009064 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.632333 B = 3088.344361 C = 4218.290443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.019 3.981 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.038 0.962 9 C 0.258 3.742 10 H 0.002 0.998 11 N -0.842 5.842 12 C -0.104 4.104 13 C -0.091 4.091 14 C -0.161 4.161 15 C -0.098 4.098 16 C -0.214 4.214 17 C 0.104 3.896 18 O -0.320 6.320 19 C 0.034 3.966 20 C -0.154 4.154 21 C -0.118 4.118 22 C -0.141 4.141 23 H 0.266 0.734 24 H 0.344 0.656 25 H 0.318 0.682 26 H 0.124 0.876 27 H 0.147 0.853 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -10.329 6.228 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.056 0.944 9 C 0.148 3.852 10 H 0.020 0.980 11 N -0.371 5.371 12 C -0.106 4.106 13 C -0.110 4.110 14 C -0.179 4.179 15 C -0.115 4.115 16 C -0.232 4.232 17 C 0.059 3.941 18 O -0.234 6.234 19 C -0.021 4.021 20 C -0.192 4.192 21 C -0.155 4.155 22 C -0.178 4.178 23 H 0.076 0.924 24 H 0.158 0.842 25 H 0.129 0.871 26 H 0.142 0.858 27 H 0.165 0.835 28 H 0.174 0.826 29 H 0.164 0.836 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.156 -10.789 6.555 15.029 hybrid contribution 0.396 2.185 -0.214 2.230 sum 8.552 -8.604 6.341 13.688 Atomic orbital electron populations 1.69863 1.06873 1.27694 1.51399 1.25739 0.95780 1.02237 0.94277 0.85522 0.78715 0.79565 0.77881 1.19892 1.19920 1.20539 1.21931 0.92756 0.92459 1.51095 0.94389 1.17449 0.88819 0.89112 0.89838 0.97972 1.59532 1.18188 1.55221 1.04185 1.19845 1.00455 0.98527 0.91724 1.20936 0.97176 0.96133 0.96728 1.21313 0.99050 0.98074 0.99498 1.21189 0.99445 0.99773 0.91126 1.21392 1.02336 0.98734 1.00782 1.19135 0.95887 0.93430 0.85694 1.86298 1.60637 1.62211 1.14216 1.24532 0.97092 0.98270 0.82246 1.23462 1.00006 0.99743 0.95994 1.22634 1.02518 0.94734 0.95584 1.23215 1.02892 0.97637 0.94069 0.92445 0.84177 0.87127 0.85842 0.83507 0.82631 0.83592 0.87196 0.91100 0.89248 0.87219 0.89600 0.89788 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.55 11.54 21.45 0.25 -53.30 16 2 C 0.02 1.08 5.38 84.65 0.46 1.54 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.54 -31.54 8.71 25.60 0.22 -31.32 16 8 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 9 C 0.26 14.22 2.67 43.42 0.12 14.34 16 10 H 0.00 0.15 7.70 -2.39 -0.02 0.13 16 11 N -0.84 -43.29 8.79 -174.94 -1.54 -44.83 16 12 C -0.10 -4.96 5.01 -19.77 -0.10 -5.06 16 13 C -0.09 -3.69 9.27 22.25 0.21 -3.49 16 14 C -0.16 -5.13 10.04 22.28 0.22 -4.91 16 15 C -0.10 -2.83 10.04 22.25 0.22 -2.61 16 16 C -0.21 -7.09 9.01 22.37 0.20 -6.89 16 17 C 0.10 4.47 6.65 22.51 0.15 4.62 16 18 O -0.32 -14.03 9.29 -92.40 -0.86 -14.89 16 19 C 0.03 1.07 3.63 31.12 0.11 1.18 16 20 C -0.15 -3.90 7.91 31.12 0.25 -3.65 16 21 C -0.12 -2.35 8.08 31.12 0.25 -2.10 16 22 C -0.14 -3.90 7.91 31.12 0.25 -3.66 16 23 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 24 H 0.34 18.88 7.08 -89.69 -0.63 18.24 16 25 H 0.32 15.19 7.20 -89.70 -0.65 14.55 16 26 H 0.12 4.85 6.29 -2.91 -0.02 4.83 16 27 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.15 3.84 5.96 -2.91 -0.02 3.82 16 30 H 0.11 2.91 6.05 -2.39 -0.01 2.90 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -67.56 296.07 2.25 -65.31 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -0.18 Total: 42.61 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 2.56 Total: -41.99 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -1.29 Total: -98.12 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.86 Total: -14.89 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.56 2.25 -65.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.353 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds