Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99805 * 2 1 4 4 H 1.48500 * 109.47121 * 270.00195 * 3 2 1 5 5 H 1.48499 * 109.47241 * 30.00359 * 3 2 1 6 6 H 1.48498 * 109.46938 * 150.00183 * 3 2 1 7 7 C 1.37877 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99861 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00326 * 179.97438 * 7 2 1 10 10 H 1.09010 * 109.46770 * 60.00434 * 9 7 2 11 11 N 1.46906 * 109.47349 * 300.00745 * 9 7 2 12 12 C 1.50692 * 109.47304 * 180.02562 * 9 7 2 13 13 C 1.38174 * 120.02782 * 100.00219 * 12 9 7 14 14 C 1.38241 * 120.05621 * 179.97438 * 13 12 9 15 15 C 1.38290 * 120.11360 * 0.03073 * 14 13 12 16 16 C 1.38125 * 120.05372 * 359.97438 * 15 14 13 17 17 C 1.38714 * 120.03154 * 280.29854 * 12 9 7 18 18 O 1.35906 * 120.05509 * 0.02562 * 17 12 9 19 19 C 1.42897 * 116.99905 * 186.34827 * 18 17 12 20 20 C 1.53779 * 113.61290 * 255.34453 * 19 18 17 21 21 C 1.53784 * 87.08287 * 220.02065 * 20 19 18 22 22 C 1.53778 * 113.61234 * 157.84727 * 19 18 17 23 23 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 24 24 H 1.00893 * 110.99471 * 176.04074 * 11 9 7 25 25 H 1.00897 * 110.99825 * 299.99515 * 11 9 7 26 26 H 1.08000 * 119.96815 * 0.02562 * 13 12 9 27 27 H 1.08001 * 119.94281 * 179.97438 * 14 13 12 28 28 H 1.08000 * 119.97220 * 179.97438 * 15 14 13 29 29 H 1.07996 * 120.02585 * 180.02562 * 16 15 14 30 30 H 1.08997 * 112.85369 * 26.64903 * 19 18 17 31 31 H 1.09002 * 113.61377 * 334.56761 * 20 19 18 32 32 H 1.08997 * 113.61739 * 105.47470 * 20 19 18 33 33 H 1.09002 * 113.61425 * 270.88789 * 21 20 19 34 34 H 1.08997 * 113.62012 * 139.97730 * 21 20 19 35 35 H 1.08994 * 113.61290 * 254.52760 * 22 19 18 36 36 H 1.09001 * 113.61607 * 25.34696 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8752 -0.6796 0.8896 11 7 4.0008 -0.5022 -1.2001 12 6 4.0138 -2.6148 0.0001 13 6 4.4398 -3.1977 -1.1781 14 6 4.9012 -4.5008 -1.1785 15 6 4.9372 -5.2245 -0.0007 16 6 4.5124 -4.6464 1.1797 17 6 4.0433 -3.3406 1.1818 18 8 3.6188 -2.7717 2.3408 19 6 3.8065 -3.5255 3.5402 20 6 2.5129 -4.1596 4.0780 21 6 3.0056 -3.7817 5.4849 22 6 3.8203 -2.6634 4.8136 23 1 -0.4850 0.8400 0.0004 24 1 5.0073 -0.4321 -1.1918 25 1 3.6770 -0.9602 -2.0388 26 1 4.4129 -2.6344 -2.0992 27 1 5.2333 -4.9547 -2.1005 28 1 5.2977 -6.2425 -0.0037 29 1 4.5412 -5.2119 2.0993 30 1 4.6419 -4.2225 3.4757 31 1 1.6089 -3.6310 3.7754 32 1 2.4515 -5.2350 3.9111 33 1 3.6214 -4.5499 5.9528 34 1 2.2160 -3.4137 6.1400 35 1 4.8144 -2.5310 5.2404 36 1 3.2750 -1.7251 4.7116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = 13.941252 kcal Electronic energy + Delta-G solvation = -18152.053567 eV Core-core repulsion = 15409.259574 eV Total energy + Delta-G solvation = -2742.793993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04651 -38.31500 -35.80601 -34.76317 -31.80198 -29.59328 -29.31102 -26.26919 -25.56527 -25.14867 -22.84873 -21.57811 -20.13701 -19.17627 -17.91451 -16.80853 -15.86584 -15.41888 -15.23490 -14.61078 -14.45875 -14.14027 -13.81142 -13.56404 -13.26269 -12.34238 -12.26752 -12.23587 -11.94062 -11.81657 -11.37497 -11.06573 -11.04312 -10.67948 -10.54569 -10.35059 -10.05545 -10.02690 -9.72534 -9.23463 -8.44189 -8.25378 -7.64766 -7.45851 -5.91028 -3.98727 1.84891 1.99101 3.63322 3.66983 3.75033 3.80850 4.28234 4.66280 4.67667 4.73685 4.88723 4.92896 5.22259 5.27864 5.33083 5.41104 5.56244 5.69608 5.80658 5.87103 5.91518 5.97825 6.04463 6.06746 6.10771 6.20085 6.44757 6.54303 6.77280 6.84110 6.96141 7.18373 7.33355 7.73730 8.04734 8.21660 8.39834 8.76611 9.09313 9.72566 11.18808 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.009671 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.900457 B = 2894.515054 C = 4060.139612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.080 3.920 3 Si 0.936 3.064 4 H -0.282 1.282 5 H -0.320 1.320 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.068 0.932 9 C 0.223 3.777 10 H 0.055 0.945 11 N -0.842 5.842 12 C -0.097 4.097 13 C -0.097 4.097 14 C -0.160 4.160 15 C -0.105 4.105 16 C -0.215 4.215 17 C 0.136 3.864 18 O -0.277 6.277 19 C 0.051 3.949 20 C -0.155 4.155 21 C -0.141 4.141 22 C -0.131 4.131 23 H 0.262 0.738 24 H 0.311 0.689 25 H 0.334 0.666 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.363 -9.024 5.918 14.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.123 4.123 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.250 1.250 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.114 3.886 10 H 0.073 0.927 11 N -0.373 5.373 12 C -0.100 4.100 13 C -0.115 4.115 14 C -0.178 4.178 15 C -0.124 4.124 16 C -0.234 4.234 17 C 0.090 3.910 18 O -0.189 6.189 19 C -0.006 4.006 20 C -0.193 4.193 21 C -0.178 4.178 22 C -0.169 4.169 23 H 0.071 0.929 24 H 0.122 0.878 25 H 0.148 0.852 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.691 -8.096 6.212 14.073 hybrid contribution 0.861 -0.473 -0.253 1.014 sum 10.551 -8.569 5.959 14.842 Atomic orbital electron populations 1.69961 1.06743 1.27102 1.50303 1.24993 0.94576 0.99925 0.92827 0.85874 0.78491 0.80925 0.77860 1.20809 1.24993 1.19999 1.20646 0.87050 0.94329 1.51892 0.91380 1.18541 0.96392 0.83591 0.90072 0.92725 1.59370 1.12920 1.58654 1.06312 1.20683 0.98713 1.00385 0.90228 1.20810 0.98570 0.94959 0.97195 1.20886 1.04161 0.95134 0.97666 1.20690 1.00299 0.98980 0.92388 1.21133 1.07844 0.95309 0.99112 1.18857 0.94289 0.91133 0.86686 1.86385 1.76393 1.43723 1.12428 1.24079 0.98102 0.94883 0.83528 1.23501 0.99290 1.00973 0.95541 1.22646 1.00145 0.98562 0.96475 1.23161 1.00956 0.99133 0.93606 0.92913 0.87797 0.85159 0.86030 0.86872 0.86889 0.86304 0.89061 0.88346 0.91432 0.90237 0.90577 0.91045 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 2 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 3 Si 0.94 24.57 26.03 -169.99 -4.43 20.14 16 4 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.32 -8.47 7.11 56.52 0.40 -8.07 16 6 H -0.27 -7.05 6.54 56.52 0.37 -6.68 16 7 C -0.50 -14.43 9.28 -34.44 -0.32 -14.75 16 8 H 0.07 2.18 7.98 -52.49 -0.42 1.76 16 9 C 0.22 5.37 1.99 -70.02 -0.14 5.23 16 10 H 0.06 1.42 6.92 -51.92 -0.36 1.06 16 11 N -0.84 -18.07 6.24 -6.65 -0.04 -18.11 16 12 C -0.10 -2.07 5.03 -104.47 -0.53 -2.59 16 13 C -0.10 -1.78 9.25 -39.60 -0.37 -2.14 16 14 C -0.16 -2.56 10.04 -39.56 -0.40 -2.96 16 15 C -0.11 -1.63 10.04 -39.60 -0.40 -2.02 16 16 C -0.22 -3.61 9.01 -39.43 -0.36 -3.97 16 17 C 0.14 2.74 6.64 -39.22 -0.26 2.48 16 18 O -0.28 -5.61 9.39 -19.44 -0.18 -5.80 16 19 C 0.05 0.77 3.63 -25.92 -0.09 0.68 16 20 C -0.16 -2.16 7.91 -25.92 -0.21 -2.36 16 21 C -0.14 -1.57 8.08 -25.91 -0.21 -1.78 16 22 C -0.13 -1.72 7.91 -25.92 -0.21 -1.92 16 23 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 24 H 0.31 5.72 9.06 -39.30 -0.36 5.36 16 25 H 0.33 6.79 7.28 -39.29 -0.29 6.51 16 26 H 0.12 2.04 6.24 -52.49 -0.33 1.71 16 27 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 28 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.69 5.96 -52.49 -0.31 1.38 16 30 H 0.09 1.20 6.05 -51.93 -0.31 0.89 16 31 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -32.79 293.43 -7.95 -40.74 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -4.92 Total: 10.07 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -3.57 Total: -23.83 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.73 Total: -45.75 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.18 Total: -5.80 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.43 Total: 20.14 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.79 -7.95 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.681 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds