Wall clock time and date at job start Mon Mar 30 2020 06:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99805 * 2 1 4 4 H 1.48500 * 109.47121 * 270.00195 * 3 2 1 5 5 H 1.48499 * 109.47241 * 30.00359 * 3 2 1 6 6 H 1.48498 * 109.46938 * 150.00183 * 3 2 1 7 7 C 1.37877 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99861 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00326 * 179.97438 * 7 2 1 10 10 H 1.09010 * 109.46770 * 60.00434 * 9 7 2 11 11 N 1.46906 * 109.47349 * 300.00745 * 9 7 2 12 12 C 1.50692 * 109.47304 * 180.02562 * 9 7 2 13 13 C 1.38174 * 120.02782 * 100.00219 * 12 9 7 14 14 C 1.38241 * 120.05621 * 179.97438 * 13 12 9 15 15 C 1.38290 * 120.11360 * 0.03073 * 14 13 12 16 16 C 1.38125 * 120.05372 * 359.97438 * 15 14 13 17 17 C 1.38714 * 120.03154 * 280.29854 * 12 9 7 18 18 O 1.35906 * 120.05509 * 0.02562 * 17 12 9 19 19 C 1.42897 * 116.99905 * 186.34827 * 18 17 12 20 20 C 1.53779 * 113.61290 * 255.34453 * 19 18 17 21 21 C 1.53784 * 87.08287 * 220.02065 * 20 19 18 22 22 C 1.53778 * 113.61234 * 157.84727 * 19 18 17 23 23 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 24 24 H 1.00893 * 110.99471 * 176.04074 * 11 9 7 25 25 H 1.00897 * 110.99825 * 299.99515 * 11 9 7 26 26 H 1.08000 * 119.96815 * 0.02562 * 13 12 9 27 27 H 1.08001 * 119.94281 * 179.97438 * 14 13 12 28 28 H 1.08000 * 119.97220 * 179.97438 * 15 14 13 29 29 H 1.07996 * 120.02585 * 180.02562 * 16 15 14 30 30 H 1.08997 * 112.85369 * 26.64903 * 19 18 17 31 31 H 1.09002 * 113.61377 * 334.56761 * 20 19 18 32 32 H 1.08997 * 113.61739 * 105.47470 * 20 19 18 33 33 H 1.09002 * 113.61425 * 270.88789 * 21 20 19 34 34 H 1.08997 * 113.62012 * 139.97730 * 21 20 19 35 35 H 1.08994 * 113.61290 * 254.52760 * 22 19 18 36 36 H 1.09001 * 113.61607 * 25.34696 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8752 -0.6796 0.8896 11 7 4.0008 -0.5022 -1.2001 12 6 4.0138 -2.6148 0.0001 13 6 4.4398 -3.1977 -1.1781 14 6 4.9012 -4.5008 -1.1785 15 6 4.9372 -5.2245 -0.0007 16 6 4.5124 -4.6464 1.1797 17 6 4.0433 -3.3406 1.1818 18 8 3.6188 -2.7717 2.3408 19 6 3.8065 -3.5255 3.5402 20 6 2.5129 -4.1596 4.0780 21 6 3.0056 -3.7817 5.4849 22 6 3.8203 -2.6634 4.8136 23 1 -0.4850 0.8400 0.0004 24 1 5.0073 -0.4321 -1.1918 25 1 3.6770 -0.9602 -2.0388 26 1 4.4129 -2.6344 -2.0992 27 1 5.2333 -4.9547 -2.1005 28 1 5.2977 -6.2425 -0.0037 29 1 4.5412 -5.2119 2.0993 30 1 4.6419 -4.2225 3.4757 31 1 1.6089 -3.6310 3.7754 32 1 2.4515 -5.2350 3.9111 33 1 3.6214 -4.5499 5.9528 34 1 2.2160 -3.4137 6.1400 35 1 4.8144 -2.5310 5.2404 36 1 3.2750 -1.7251 4.7116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261062163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:22 Heat of formation + Delta-G solvation = -8.557789 kcal Electronic energy + Delta-G solvation = -18153.029198 eV Core-core repulsion = 15409.259574 eV Total energy + Delta-G solvation = -2743.769624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36182 -39.56862 -37.11673 -36.49753 -33.99690 -30.99930 -30.74396 -28.30053 -26.65219 -26.27213 -24.55211 -22.86793 -21.71409 -20.37422 -19.25284 -18.98171 -17.22316 -16.90470 -16.56629 -16.25893 -15.98655 -15.75169 -15.11030 -14.97616 -14.89150 -14.28585 -13.63809 -13.52744 -13.43431 -13.23565 -12.72661 -12.69361 -12.47041 -12.18262 -12.09628 -11.79718 -11.62230 -11.46898 -11.28942 -11.13086 -10.73657 -9.67259 -9.39294 -8.88436 -8.22846 -6.33129 0.49247 0.63516 1.47589 1.55264 1.69062 2.49977 2.53054 2.92313 3.11503 3.58309 3.62455 3.80401 3.86594 4.01432 4.05990 4.15962 4.26230 4.34012 4.57943 4.64549 4.73619 4.78939 4.82133 4.95783 5.00664 5.02527 5.11203 5.19566 5.38437 5.48457 5.51410 5.62930 5.77776 6.03166 6.14695 6.46485 6.74759 6.78163 6.99036 7.41204 8.90998 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.009671 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.900457 B = 2894.515054 C = 4060.139612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.023 3.977 3 Si 1.002 2.998 4 H -0.272 1.272 5 H -0.323 1.323 6 H -0.267 1.267 7 C -0.495 4.495 8 H 0.019 0.981 9 C 0.237 3.763 10 H 0.031 0.969 11 N -0.844 5.844 12 C -0.142 4.142 13 C -0.103 4.103 14 C -0.159 4.159 15 C -0.094 4.094 16 C -0.215 4.215 17 C 0.112 3.888 18 O -0.317 6.317 19 C 0.036 3.964 20 C -0.163 4.163 21 C -0.119 4.119 22 C -0.135 4.135 23 H 0.263 0.737 24 H 0.333 0.667 25 H 0.341 0.659 26 H 0.131 0.869 27 H 0.149 0.851 28 H 0.155 0.845 29 H 0.145 0.855 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.098 -10.772 6.071 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.175 4.175 3 Si 0.832 3.168 4 H -0.198 1.198 5 H -0.254 1.254 6 H -0.192 1.192 7 C -0.533 4.533 8 H 0.038 0.962 9 C 0.127 3.873 10 H 0.049 0.951 11 N -0.376 5.376 12 C -0.144 4.144 13 C -0.121 4.121 14 C -0.177 4.177 15 C -0.112 4.112 16 C -0.234 4.234 17 C 0.066 3.934 18 O -0.231 6.231 19 C -0.019 4.019 20 C -0.200 4.200 21 C -0.156 4.156 22 C -0.172 4.172 23 H 0.072 0.928 24 H 0.147 0.853 25 H 0.157 0.843 26 H 0.149 0.851 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.163 0.837 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.450 -9.860 6.361 17.108 hybrid contribution 0.027 -0.097 -0.296 0.313 sum 12.477 -9.957 6.065 17.076 Atomic orbital electron populations 1.70093 1.08429 1.27932 1.52709 1.25842 0.95223 1.03484 0.92910 0.84827 0.77212 0.76634 0.78152 1.19818 1.25360 1.19230 1.20826 0.89947 0.92123 1.50406 0.96240 1.18007 0.93075 0.86172 0.89999 0.95110 1.59019 1.14640 1.58313 1.05592 1.20547 1.02157 0.99373 0.92366 1.21019 0.98308 0.96340 0.96414 1.21302 1.02882 0.93993 0.99513 1.21234 0.98038 1.00553 0.91372 1.21451 1.06871 0.94019 1.01041 1.19172 0.95152 0.92596 0.86441 1.86335 1.77016 1.45802 1.13899 1.24548 0.99326 0.95757 0.82306 1.23475 0.97422 1.01412 0.97739 1.22646 0.99996 0.98139 0.94857 1.23189 1.02317 0.98464 0.93266 0.92843 0.85341 0.84347 0.85122 0.83351 0.82715 0.83710 0.86561 0.92104 0.89739 0.86899 0.90004 0.88684 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.49 13.96 21.45 0.30 -62.19 16 2 C 0.02 1.44 5.47 84.66 0.46 1.90 16 3 Si 1.00 51.99 26.03 68.60 1.79 53.78 16 4 H -0.27 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.32 -16.80 7.11 99.48 0.71 -16.10 16 6 H -0.27 -13.41 6.54 99.48 0.65 -12.76 16 7 C -0.49 -29.88 9.28 25.60 0.24 -29.64 16 8 H 0.02 1.32 7.98 -2.91 -0.02 1.30 16 9 C 0.24 11.72 1.99 43.42 0.09 11.80 16 10 H 0.03 1.66 6.92 -2.38 -0.02 1.64 16 11 N -0.84 -35.75 6.24 -174.95 -1.09 -36.84 16 12 C -0.14 -6.08 5.03 -19.77 -0.10 -6.18 16 13 C -0.10 -3.62 9.25 22.26 0.21 -3.42 16 14 C -0.16 -4.53 10.04 22.28 0.22 -4.31 16 15 C -0.09 -2.53 10.04 22.26 0.22 -2.30 16 16 C -0.22 -6.72 9.01 22.37 0.20 -6.52 16 17 C 0.11 4.52 6.64 22.51 0.15 4.67 16 18 O -0.32 -13.31 9.39 -92.49 -0.87 -14.18 16 19 C 0.04 1.08 3.63 31.12 0.11 1.20 16 20 C -0.16 -4.50 7.91 31.12 0.25 -4.25 16 21 C -0.12 -2.44 8.08 31.12 0.25 -2.19 16 22 C -0.13 -3.46 7.91 31.12 0.25 -3.21 16 23 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 24 H 0.33 11.82 9.06 -89.70 -0.81 11.00 16 25 H 0.34 13.69 7.28 -89.70 -0.65 13.04 16 26 H 0.13 4.20 6.24 -2.91 -0.02 4.18 16 27 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 28 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.15 3.63 5.96 -2.91 -0.02 3.61 16 30 H 0.12 2.79 6.05 -2.39 -0.01 2.77 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -75.58 293.43 2.25 -73.33 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.42 Total: 28.54 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 2.55 Total: -42.44 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -0.79 Total: -99.02 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.87 Total: -14.18 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 1.79 Total: 53.78 kcal Total: -75.58 2.25 -73.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.769 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds