Wall clock time and date at job start Mon Mar 30 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99607 * 2 1 4 4 H 1.48500 * 109.47346 * 270.00107 * 3 2 1 5 5 H 1.48502 * 109.47247 * 30.00784 * 3 2 1 6 6 H 1.48500 * 109.47232 * 150.00204 * 3 2 1 7 7 C 1.37868 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00454 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00214 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46835 * 300.00160 * 9 7 2 11 11 C 1.53005 * 109.47110 * 59.99738 * 9 7 2 12 12 N 1.46903 * 109.46844 * 185.00059 * 11 9 7 13 13 C 1.50700 * 109.47559 * 180.02562 * 9 7 2 14 14 C 1.38266 * 119.93841 * 299.72661 * 13 9 7 15 15 C 1.38153 * 120.05281 * 179.72521 * 14 13 9 16 16 C 1.38735 * 119.94242 * 0.56509 * 15 14 13 17 17 O 1.35898 * 120.05596 * 179.68302 * 16 15 14 18 18 C 1.42897 * 116.99912 * 174.50429 * 17 16 15 19 19 C 1.53000 * 117.49614 * 224.90314 * 18 17 16 20 20 C 1.53001 * 117.49937 * 156.24225 * 18 17 16 21 21 C 1.38738 * 119.88744 * 359.70664 * 16 15 14 22 22 C 1.38145 * 119.94172 * 359.97438 * 21 16 15 23 23 H 0.97005 * 120.00402 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46491 * 65.00537 * 11 9 7 25 25 H 1.08998 * 109.47078 * 305.00395 * 11 9 7 26 26 H 1.00898 * 110.99851 * 56.05140 * 12 11 9 27 27 H 1.00900 * 110.99719 * 180.02562 * 12 11 9 28 28 H 1.07992 * 119.97648 * 359.97438 * 14 13 9 29 29 H 1.07995 * 120.02653 * 180.24984 * 15 14 13 30 30 H 1.08999 * 115.55321 * 10.56975 * 18 17 16 31 31 H 1.09000 * 117.50282 * 0.02562 * 19 18 17 32 32 H 1.09007 * 117.49792 * 145.02177 * 19 18 17 33 33 H 1.08993 * 117.50331 * 214.97600 * 20 18 17 34 34 H 1.09005 * 117.49789 * 359.97438 * 20 18 17 35 35 H 1.07993 * 120.02515 * 180.02562 * 21 16 15 36 36 H 1.07999 * 119.96818 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5570 0.8897 11 6 0.3709 -2.5799 -1.2495 12 7 -0.4523 -3.7952 -1.1905 13 6 2.2304 -3.6446 -0.0005 14 6 3.1304 -3.7830 -1.0410 15 6 4.0330 -4.8289 -1.0406 16 6 4.0279 -5.7475 -0.0009 17 8 4.9105 -6.7809 -0.0014 18 6 4.9305 -7.6174 1.1570 19 6 6.2972 -7.9986 1.7295 20 6 5.4585 -9.0436 0.9894 21 6 3.1201 -5.6095 1.0391 22 6 2.2240 -4.5581 1.0373 23 1 -0.4851 0.8401 0.0004 24 1 1.0024 -2.6115 -2.1374 25 1 -0.2765 -1.7043 -1.2949 26 1 -0.9995 -3.8205 -0.3432 27 1 -1.0427 -3.8718 -2.0051 28 1 3.1305 -3.0706 -1.8527 29 1 4.7384 -4.9343 -1.8515 30 1 4.1146 -7.4625 1.8630 31 1 7.1811 -7.6109 1.2228 32 1 6.3803 -8.0949 2.8121 33 1 4.9903 -9.8269 1.5853 34 1 5.7902 -9.3439 -0.0046 35 1 3.1145 -6.3230 1.8498 36 1 1.5169 -4.4505 1.8464 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:59 Heat of formation + Delta-G solvation = -2.104516 kcal Electronic energy + Delta-G solvation = -17442.810691 eV Core-core repulsion = 14699.320902 eV Total energy + Delta-G solvation = -2743.489789 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05288 -39.19174 -36.91992 -35.72737 -34.07106 -31.81084 -31.78157 -28.54302 -25.81428 -24.86483 -23.35116 -23.25836 -22.40861 -20.89631 -19.39862 -18.44540 -17.04773 -16.82892 -16.43349 -16.03778 -15.72726 -15.67854 -15.14988 -14.97108 -14.54369 -14.09529 -13.96860 -13.66120 -13.31188 -13.22178 -12.86208 -12.59771 -12.42516 -12.36341 -11.98684 -11.66521 -11.35776 -11.30682 -11.19185 -10.75666 -10.51527 -9.75339 -9.30477 -8.70234 -8.08844 -6.24405 0.59011 0.74048 1.41200 1.43161 1.52805 2.18530 2.42593 2.83546 3.09604 3.17570 3.68503 3.99682 4.01536 4.09015 4.10071 4.19116 4.41263 4.45416 4.67960 4.73883 4.75885 4.88052 4.97902 5.01693 5.16045 5.21103 5.24372 5.46246 5.49574 5.62372 5.68413 5.90891 6.01660 6.16024 6.29319 6.56939 6.63764 6.75226 6.93966 7.43269 8.91756 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031502 B = 0.005205 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.626400 B = 5378.466565 C = 5847.423773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.089 3.911 10 H 0.004 0.996 11 C 0.078 3.922 12 N -0.847 5.847 13 C -0.066 4.066 14 C -0.084 4.084 15 C -0.159 4.159 16 C 0.099 3.901 17 O -0.303 6.303 18 C -0.029 4.029 19 C -0.179 4.179 20 C -0.160 4.160 21 C -0.201 4.201 22 C -0.097 4.097 23 H 0.261 0.739 24 H 0.037 0.963 25 H 0.039 0.961 26 H 0.333 0.667 27 H 0.334 0.666 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 -13.768 2.208 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.180 4.180 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.069 0.931 9 C 0.070 3.930 10 H 0.022 0.978 11 C -0.053 4.053 12 N -0.376 5.376 13 C -0.066 4.066 14 C -0.102 4.102 15 C -0.178 4.178 16 C 0.055 3.945 17 O -0.217 6.217 18 C -0.085 4.085 19 C -0.216 4.216 20 C -0.197 4.197 21 C -0.219 4.219 22 C -0.115 4.115 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.114 0.886 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.117 0.883 35 H 0.166 0.834 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.503 -14.088 2.048 16.092 hybrid contribution -0.757 1.913 0.017 2.057 sum 6.745 -12.175 2.065 14.071 Atomic orbital electron populations 1.69983 1.06968 1.27209 1.51202 1.25657 0.95647 1.02064 0.94635 0.85649 0.78716 0.79596 0.78290 1.20026 1.20857 1.19678 1.21413 0.92904 0.91212 1.50662 0.93118 1.17642 0.91506 0.90195 0.93654 0.97753 1.21716 0.95756 0.90086 0.97700 1.58896 1.29985 1.41750 1.06922 1.20143 0.96603 0.95938 0.93958 1.20761 0.94475 0.96578 0.98385 1.20464 1.02421 0.95361 0.99537 1.18843 0.91031 0.88844 0.95819 1.85925 1.56490 1.38870 1.40430 1.23382 1.00411 0.94218 0.90530 1.23549 0.94200 1.02208 1.01682 1.23464 1.02270 0.91021 1.02904 1.21266 0.98730 1.01437 1.00484 1.20937 0.98419 0.94002 0.98174 0.92943 0.94457 0.94328 0.85567 0.85444 0.86601 0.84852 0.85014 0.88613 0.85805 0.85304 0.88270 0.83374 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.05 11.29 21.44 0.24 -50.81 16 2 C 0.02 1.02 5.29 84.65 0.45 1.47 16 3 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.52 -28.47 8.25 25.60 0.21 -28.26 16 8 H 0.05 2.78 7.61 -2.91 -0.02 2.76 16 9 C 0.09 4.43 2.09 -12.28 -0.03 4.41 16 10 H 0.00 0.24 7.87 -2.38 -0.02 0.22 16 11 C 0.08 3.68 5.91 86.30 0.51 4.19 16 12 N -0.85 -33.28 9.34 -186.71 -1.74 -35.03 16 13 C -0.07 -2.93 4.47 -19.85 -0.09 -3.02 16 14 C -0.08 -3.50 8.65 22.26 0.19 -3.31 16 15 C -0.16 -5.90 9.99 22.37 0.22 -5.68 16 16 C 0.10 3.46 6.68 22.51 0.15 3.61 16 17 O -0.30 -9.46 10.39 -92.40 -0.96 -10.42 16 18 C -0.03 -0.67 6.20 30.59 0.19 -0.48 16 19 C -0.18 -3.16 10.48 30.62 0.32 -2.84 16 20 C -0.16 -2.67 10.48 30.62 0.32 -2.35 16 21 C -0.20 -6.79 9.19 22.37 0.21 -6.59 16 22 C -0.10 -3.81 9.66 22.25 0.22 -3.59 16 23 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 24 H 0.04 1.77 7.21 -2.39 -0.02 1.75 16 25 H 0.04 2.03 5.95 -2.39 -0.01 2.02 16 26 H 0.33 12.72 8.99 -89.70 -0.81 11.91 16 27 H 0.33 11.41 9.08 -89.69 -0.81 10.59 16 28 H 0.12 4.90 7.53 -2.91 -0.02 4.88 16 29 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.13 2.72 5.33 -2.39 -0.01 2.71 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.15 3.95 5.52 -2.91 -0.02 3.93 16 36 H 0.12 4.44 7.94 -2.91 -0.02 4.42 16 Total: -1.00 -60.97 301.18 1.92 -59.05 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.52 Total: 34.53 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 2.87 Total: -42.44 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -1.50 Total: -85.84 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.96 Total: -10.42 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -60.97 1.92 -59.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.941 kcal (2) G-P(sol) polarization free energy of solvation -60.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds