Wall clock time and date at job start Mon Mar 30 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36806 * 125.03630 * 2 1 4 4 H 0.96997 * 125.07304 * 359.97438 * 3 2 1 5 5 C 1.37816 * 109.86087 * 179.97438 * 3 2 1 6 6 C 1.39100 * 133.39848 * 180.29524 * 5 3 2 7 7 C 1.37712 * 119.95562 * 180.20214 * 6 5 3 8 8 C 1.39035 * 120.64729 * 359.44636 * 7 6 5 9 9 F 1.35101 * 119.83332 * 180.27985 * 8 7 6 10 10 C 1.37793 * 120.33529 * 0.30456 * 8 7 6 11 11 C 1.39683 * 119.62331 * 359.97438 * 10 8 7 12 12 C 1.34249 * 125.02992 * 179.97438 * 2 1 3 13 13 C 1.50700 * 126.49425 * 0.02562 * 12 2 1 14 14 C 1.52995 * 109.47574 * 269.99879 * 13 12 2 15 15 C 1.50693 * 109.47572 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99654 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00568 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99436 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46977 * 60.00063 * 19 17 15 21 21 H 1.48507 * 109.46791 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47292 * 299.99793 * 19 17 15 23 23 H 1.09005 * 109.46773 * 270.02681 * 1 2 3 24 24 H 1.08997 * 109.46963 * 30.01944 * 1 2 3 25 25 H 1.08994 * 109.47223 * 150.02608 * 1 2 3 26 26 H 1.08007 * 120.02524 * 359.94423 * 6 5 3 27 27 H 1.08002 * 119.68013 * 179.73178 * 7 6 5 28 28 H 1.07992 * 120.19028 * 179.97438 * 10 8 7 29 29 H 1.09000 * 109.47048 * 30.00772 * 13 12 2 30 30 H 1.09004 * 109.46870 * 150.00245 * 13 12 2 31 31 H 1.09008 * 109.47371 * 300.00694 * 14 13 12 32 32 H 1.09004 * 109.46723 * 60.00276 * 14 13 12 33 33 H 0.96999 * 119.99684 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1202 0.0000 4 1 1.9624 2.0323 -0.0004 5 6 3.6225 0.7594 0.0006 6 6 4.8095 1.4846 0.0060 7 6 6.0184 0.8251 0.0008 8 6 6.0676 -0.5644 0.0016 9 9 7.2627 -1.1946 0.0021 10 6 4.9038 -1.3020 0.0014 11 6 3.6706 -0.6460 0.0009 12 6 2.2776 -1.0993 0.0005 13 6 1.8000 -2.5286 0.0006 14 6 1.6379 -3.0122 1.4430 15 6 1.1609 -4.4416 1.4431 16 1 0.9909 -4.9542 0.5078 17 6 0.9416 -5.0953 2.6372 18 7 1.1492 -4.4712 3.7761 19 14 0.3497 -6.8669 2.6372 20 1 1.3434 -7.7208 1.9380 21 1 0.1925 -7.3363 4.0373 22 1 -0.9567 -6.9524 1.9362 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 4.7831 2.5644 0.0102 27 1 6.9372 1.3926 0.0007 28 1 4.9448 -2.3812 0.0016 29 1 0.8410 -2.5913 -0.5137 30 1 2.5293 -3.1554 -0.5128 31 1 2.5970 -2.9494 1.9573 32 1 0.9087 -2.3854 1.9565 33 1 0.9945 -4.9309 4.6162 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261068482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:11 Heat of formation + Delta-G solvation = -12.202308 kcal Electronic energy + Delta-G solvation = -17076.182301 eV Core-core repulsion = 14208.794333 eV Total energy + Delta-G solvation = -2867.387967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.49771 -41.06725 -36.62484 -34.18432 -32.33708 -30.81557 -30.23916 -28.38652 -26.60719 -24.76306 -22.17047 -21.56266 -21.07805 -18.56800 -17.50674 -17.03179 -16.17565 -15.73976 -15.28221 -14.85232 -14.53989 -14.29655 -13.91485 -13.36372 -12.74357 -12.71815 -12.62115 -12.46680 -12.16270 -11.96772 -11.68591 -11.05822 -10.90761 -10.86120 -10.70574 -10.51038 -9.76095 -9.70785 -9.14425 -9.02343 -8.29406 -7.82326 -7.20197 -5.94649 -3.97480 1.20984 1.63334 2.97587 3.27778 3.36218 3.40744 3.43180 3.96686 4.50087 4.53452 4.80751 5.04967 5.11998 5.39409 5.40761 5.46218 5.56539 5.63045 5.79307 6.05573 6.09374 6.17723 6.28249 6.33967 6.42518 6.71719 6.75079 6.96834 7.06114 7.24541 7.38334 7.74460 7.76895 7.92563 8.07218 8.47266 9.10087 9.66219 11.16242 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.022059 B = 0.006079 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.029154 B = 4604.694273 C = 5544.783861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.067 3.933 3 N -0.595 5.595 4 H 0.410 0.590 5 C 0.087 3.913 6 C -0.108 4.108 7 C -0.137 4.137 8 C 0.058 3.942 9 F -0.147 7.147 10 C -0.093 4.093 11 C -0.073 4.073 12 C -0.136 4.136 13 C -0.045 4.045 14 C 0.032 3.968 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.016 0.984 32 H 0.015 0.985 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 13.149 -8.359 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 N -0.199 5.199 4 H 0.247 0.753 5 C -0.021 4.021 6 C -0.128 4.128 7 C -0.157 4.157 8 C 0.037 3.963 9 F -0.126 7.126 10 C -0.113 4.113 11 C -0.079 4.079 12 C -0.142 4.142 13 C -0.083 4.083 14 C -0.006 4.006 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.485 13.197 -8.163 15.904 hybrid contribution -0.158 -0.581 0.245 0.651 sum 3.327 12.615 -7.918 15.261 Atomic orbital electron populations 1.20432 0.87651 1.03077 1.03406 1.20111 0.93402 0.85113 1.05263 1.41596 1.03669 1.07970 1.66666 0.75329 1.18190 0.84788 0.94106 1.04979 1.19694 0.88936 0.98815 1.05394 1.20617 0.98054 0.92366 1.04618 1.17250 0.80394 0.90421 1.08192 1.91453 1.43879 1.82671 1.94600 1.20531 0.89584 1.00726 1.00434 1.18899 0.93180 0.91511 1.04289 1.20580 0.89416 0.96115 1.08067 1.20207 0.99124 0.87709 1.01242 1.19035 0.97131 0.95209 0.89180 1.21249 1.44702 0.97788 0.92215 0.92703 1.25015 0.95709 0.97951 0.95695 1.69968 1.49244 1.36970 0.97238 0.86688 0.79309 0.85285 0.76887 1.20246 1.21364 1.20270 0.90288 0.92174 0.89340 0.85763 0.84996 0.84482 0.92385 0.92524 0.96596 0.96661 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.18 36.01 0.37 -0.77 16 2 C 0.07 1.05 7.08 -81.78 -0.58 0.47 16 3 N -0.59 -8.05 6.07 -6.94 -0.04 -8.10 16 4 H 0.41 3.98 8.96 -40.82 -0.37 3.61 16 5 C 0.09 1.33 7.27 -83.95 -0.61 0.72 16 6 C -0.11 -1.39 10.06 -39.45 -0.40 -1.78 16 7 C -0.14 -1.83 9.99 -39.48 -0.39 -2.23 16 8 C 0.06 0.92 7.29 -39.45 -0.29 0.64 16 9 F -0.15 -2.37 17.26 2.25 0.04 -2.34 16 10 C -0.09 -1.65 10.08 -39.21 -0.40 -2.04 16 11 C -0.07 -1.33 6.35 -105.14 -0.67 -2.00 16 12 C -0.14 -2.55 5.57 -102.71 -0.57 -3.12 16 13 C -0.04 -0.94 5.44 -27.89 -0.15 -1.09 16 14 C 0.03 0.82 4.95 -27.89 -0.14 0.69 16 15 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 16 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 1.16 7.04 -51.93 -0.37 0.80 16 26 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.14 2.43 8.06 -52.49 -0.42 2.00 16 29 H 0.06 1.14 7.05 -51.93 -0.37 0.77 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 290.29 15.07 4.37 4.37 Total: -1.00 -31.93 290.29 -8.17 -40.10 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.02 Total: -0.31 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -4.24 Total: -24.00 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.69 Total: -34.51 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.93 -8.17 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.898 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds