Wall clock time and date at job start Mon Mar 30 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36806 * 125.03630 * 2 1 4 4 H 0.96997 * 125.07304 * 359.97438 * 3 2 1 5 5 C 1.37816 * 109.86087 * 179.97438 * 3 2 1 6 6 C 1.39100 * 133.39848 * 180.29524 * 5 3 2 7 7 C 1.37712 * 119.95562 * 180.20214 * 6 5 3 8 8 C 1.39035 * 120.64729 * 359.44636 * 7 6 5 9 9 F 1.35101 * 119.83332 * 180.27985 * 8 7 6 10 10 C 1.37793 * 120.33529 * 0.30456 * 8 7 6 11 11 C 1.39683 * 119.62331 * 359.97438 * 10 8 7 12 12 C 1.34249 * 125.02992 * 179.97438 * 2 1 3 13 13 C 1.50700 * 126.49425 * 0.02562 * 12 2 1 14 14 C 1.52995 * 109.47574 * 269.99879 * 13 12 2 15 15 C 1.50693 * 109.47572 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99654 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00568 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99436 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46977 * 60.00063 * 19 17 15 21 21 H 1.48507 * 109.46791 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47292 * 299.99793 * 19 17 15 23 23 H 1.09005 * 109.46773 * 270.02681 * 1 2 3 24 24 H 1.08997 * 109.46963 * 30.01944 * 1 2 3 25 25 H 1.08994 * 109.47223 * 150.02608 * 1 2 3 26 26 H 1.08007 * 120.02524 * 359.94423 * 6 5 3 27 27 H 1.08002 * 119.68013 * 179.73178 * 7 6 5 28 28 H 1.07992 * 120.19028 * 179.97438 * 10 8 7 29 29 H 1.09000 * 109.47048 * 30.00772 * 13 12 2 30 30 H 1.09004 * 109.46870 * 150.00245 * 13 12 2 31 31 H 1.09008 * 109.47371 * 300.00694 * 14 13 12 32 32 H 1.09004 * 109.46723 * 60.00276 * 14 13 12 33 33 H 0.96999 * 119.99684 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1202 0.0000 4 1 1.9624 2.0323 -0.0004 5 6 3.6225 0.7594 0.0006 6 6 4.8095 1.4846 0.0060 7 6 6.0184 0.8251 0.0008 8 6 6.0676 -0.5644 0.0016 9 9 7.2627 -1.1946 0.0021 10 6 4.9038 -1.3020 0.0014 11 6 3.6706 -0.6460 0.0009 12 6 2.2776 -1.0993 0.0005 13 6 1.8000 -2.5286 0.0006 14 6 1.6379 -3.0122 1.4430 15 6 1.1609 -4.4416 1.4431 16 1 0.9909 -4.9542 0.5078 17 6 0.9416 -5.0953 2.6372 18 7 1.1492 -4.4712 3.7761 19 14 0.3497 -6.8669 2.6372 20 1 1.3434 -7.7208 1.9380 21 1 0.1925 -7.3363 4.0373 22 1 -0.9567 -6.9524 1.9362 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 4.7831 2.5644 0.0102 27 1 6.9372 1.3926 0.0007 28 1 4.9448 -2.3812 0.0016 29 1 0.8410 -2.5913 -0.5137 30 1 2.5293 -3.1554 -0.5128 31 1 2.5970 -2.9494 1.9573 32 1 0.9087 -2.3854 1.9565 33 1 0.9945 -4.9309 4.6162 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:11 Heat of formation + Delta-G solvation = -30.476759 kcal Electronic energy + Delta-G solvation = -17076.974740 eV Core-core repulsion = 14208.794333 eV Total energy + Delta-G solvation = -2868.180407 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.77126 -42.27853 -37.80904 -36.02975 -34.15433 -32.01032 -31.72862 -29.82069 -27.92774 -26.57730 -23.52014 -23.10144 -22.51784 -19.94563 -18.75385 -18.43361 -18.16096 -16.96070 -16.58060 -16.47816 -16.07781 -15.60739 -15.23258 -14.62004 -14.54102 -14.08198 -13.94376 -13.70363 -13.63861 -13.44828 -13.13227 -12.76940 -12.70391 -12.48030 -12.04830 -11.97868 -11.66210 -11.51354 -11.17456 -10.53626 -10.48947 -9.01817 -8.50803 -8.15691 -6.28718 0.02038 0.42734 1.40692 1.44427 1.51973 1.69162 2.16391 2.43185 2.74013 3.15661 3.33276 3.69092 3.87825 4.07251 4.21875 4.31241 4.41476 4.46726 4.73044 4.74557 4.88003 4.96966 4.98338 5.11155 5.15797 5.20297 5.23904 5.33411 5.53352 5.71938 5.76030 5.87458 5.92999 6.15051 6.27807 6.75581 6.88802 7.40445 8.94601 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.022059 B = 0.006079 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.029154 B = 4604.694273 C = 5544.783861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.089 3.911 3 N -0.575 5.575 4 H 0.433 0.567 5 C 0.080 3.920 6 C -0.087 4.087 7 C -0.133 4.133 8 C 0.052 3.948 9 F -0.152 7.152 10 C -0.130 4.130 11 C -0.105 4.105 12 C -0.192 4.192 13 C -0.027 4.027 14 C 0.043 3.957 15 C -0.543 4.543 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.262 1.262 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.173 0.827 27 H 0.169 0.831 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.044 0.956 31 H -0.025 1.025 32 H -0.006 1.006 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 15.191 -9.268 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.019 4.019 3 N -0.181 5.181 4 H 0.274 0.726 5 C -0.028 4.028 6 C -0.107 4.107 7 C -0.152 4.152 8 C 0.032 3.968 9 F -0.131 7.131 10 C -0.150 4.150 11 C -0.110 4.110 12 C -0.199 4.199 13 C -0.065 4.065 14 C 0.006 3.994 15 C -0.581 4.581 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.187 1.187 23 H 0.093 0.907 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.190 0.810 27 H 0.186 0.814 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.063 0.937 31 H -0.007 1.007 32 H 0.012 0.988 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.007 15.275 -9.092 18.029 hybrid contribution 0.029 -1.133 0.532 1.252 sum 3.037 14.142 -8.560 16.808 Atomic orbital electron populations 1.20542 0.85512 1.04910 1.03652 1.20425 0.94636 0.84942 1.01912 1.41509 1.02817 1.08564 1.65187 0.72617 1.18450 0.86224 0.93019 1.05102 1.20205 0.87321 1.00954 1.02194 1.21028 0.99965 0.90976 1.03274 1.17515 0.79529 0.91739 1.08010 1.91433 1.43969 1.83084 1.94621 1.20510 0.90914 1.00059 1.03509 1.19107 0.92826 0.93514 1.05518 1.20439 0.90873 0.95674 1.12865 1.19824 0.99480 0.89657 0.97511 1.18840 0.94006 0.94507 0.92029 1.21709 1.44652 0.98972 0.92735 0.91983 1.25992 0.95677 1.02956 0.95166 1.70118 1.50315 1.39094 0.97969 0.85512 0.79317 0.79129 0.77162 1.19474 1.20924 1.18660 0.90661 0.88033 0.89877 0.81002 0.81359 0.86812 0.91223 0.93681 1.00650 0.98805 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.12 10.18 71.24 0.72 -1.40 16 2 C 0.09 2.72 7.08 40.87 0.29 3.00 16 3 N -0.58 -14.04 6.07 -175.88 -1.07 -15.11 16 4 H 0.43 6.58 8.96 -92.71 -0.83 5.75 16 5 C 0.08 2.30 7.27 38.99 0.28 2.58 16 6 C -0.09 -1.90 10.06 22.35 0.22 -1.68 16 7 C -0.13 -3.19 9.99 22.34 0.22 -2.97 16 8 C 0.05 1.68 7.29 22.36 0.16 1.84 16 9 F -0.15 -4.97 17.26 44.97 0.78 -4.20 16 10 C -0.13 -4.90 10.08 22.51 0.23 -4.68 16 11 C -0.10 -3.90 6.35 -20.20 -0.13 -4.03 16 12 C -0.19 -7.47 5.57 -18.63 -0.10 -7.58 16 13 C -0.03 -1.19 5.44 29.85 0.16 -1.02 16 14 C 0.04 2.40 4.95 29.84 0.15 2.55 16 15 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 16 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 17 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 18 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 19 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 24 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 25 H 0.08 2.10 7.04 -2.39 -0.02 2.08 16 26 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 27 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.07 2.83 7.05 -2.39 -0.02 2.81 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.01 16 31 H -0.02 -1.56 8.14 -2.38 -0.02 -1.58 16 32 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -73.03 290.29 5.22 -67.81 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.30 Total: 7.08 kcal Atomic # 6 Polarization: -47.34 SS G_CDS: 2.91 Total: -44.43 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -0.78 Total: -73.35 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.78 Total: -4.20 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.03 5.22 -67.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.329 kcal (2) G-P(sol) polarization free energy of solvation -73.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds