Wall clock time and date at job start Mon Mar 30 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35597 * 116.99667 * 2 1 4 4 C 1.38656 * 119.91739 * 0.02562 * 3 2 1 5 5 C 1.38365 * 120.53600 * 179.97438 * 4 3 2 6 6 O 1.35666 * 119.86172 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99675 * 0.02562 * 6 5 4 8 8 C 1.41313 * 120.28298 * 0.02562 * 5 4 3 9 9 C 1.40708 * 120.26510 * 179.97438 * 8 5 4 10 10 H 1.07999 * 119.99978 * 35.43492 * 9 8 5 11 11 C 1.39762 * 120.00413 * 215.43088 * 9 8 5 12 12 N 1.31040 * 119.99713 * 19.69941 * 11 9 8 13 13 Si 1.86794 * 120.00250 * 199.69338 * 11 9 8 14 14 H 1.48500 * 109.47094 * 60.00080 * 13 11 9 15 15 H 1.48504 * 109.47103 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47029 * 300.00435 * 13 11 9 17 17 C 1.41556 * 119.47728 * 359.95887 * 8 5 4 18 18 N 1.37071 * 133.26209 * 180.02562 * 17 8 5 19 19 H 0.97008 * 125.01662 * 0.02562 * 18 17 8 20 20 C 1.36714 * 109.96105 * 179.76253 * 18 17 8 21 21 C 1.34403 * 109.72302 * 0.44412 * 20 18 17 22 22 C 1.39972 * 119.33727 * 0.04289 * 17 8 5 23 23 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46878 * 300.00110 * 1 2 3 25 25 H 1.08996 * 109.46783 * 59.99993 * 1 2 3 26 26 H 1.08002 * 119.73797 * 359.95341 * 4 3 2 27 27 H 1.09007 * 109.47344 * 299.99494 * 7 6 5 28 28 H 1.08998 * 109.47772 * 59.99819 * 7 6 5 29 29 H 1.08997 * 109.47049 * 179.97438 * 7 6 5 30 30 H 0.96992 * 120.00093 * 180.02562 * 12 11 9 31 31 H 1.08004 * 125.14251 * 180.31531 * 20 18 17 32 32 H 1.07997 * 126.57679 * 179.83732 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2877 2.3699 0.0005 5 6 1.9024 3.6095 0.0011 6 8 1.1485 4.7374 0.0011 7 6 -0.2706 4.5691 0.0011 8 6 3.3123 3.7058 0.0005 9 6 3.9371 4.9665 0.0005 10 1 3.4942 5.7886 0.5432 11 6 5.1307 5.1550 -0.7015 12 7 5.4706 4.3196 -1.6522 13 14 6.2416 6.5978 -0.2849 14 1 6.6713 6.4984 1.1331 15 1 7.4357 6.5741 -1.1674 16 1 5.5005 7.8684 -0.4895 17 6 4.0912 2.5238 0.0003 18 7 5.4415 2.2886 0.0003 19 1 6.1263 2.9758 0.0008 20 6 5.6809 0.9425 0.0054 21 6 4.5146 0.2745 -0.0010 22 6 3.4496 1.2797 -0.0003 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2095 2.3069 0.0002 27 1 -0.5709 4.0161 -0.8890 28 1 -0.5710 4.0161 0.8910 29 1 -0.7524 5.5468 0.0015 30 1 6.2991 4.4502 -2.1392 31 1 6.6592 0.4851 0.0113 32 1 4.3873 -0.7980 -0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261077876.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:14 Heat of formation + Delta-G solvation = -34.839192 kcal Electronic energy + Delta-G solvation = -18093.949366 eV Core-core repulsion = 15213.207000 eV Total energy + Delta-G solvation = -2880.742366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.76471 -39.88486 -39.24619 -36.09371 -34.87157 -31.79486 -30.32747 -29.25242 -28.29715 -27.74639 -25.88603 -22.97831 -21.98140 -21.14317 -19.67459 -18.94860 -17.68823 -17.17658 -16.95191 -16.49960 -16.37026 -16.01816 -15.37771 -15.20589 -14.69721 -14.45485 -13.85634 -13.79725 -13.53298 -13.00011 -12.94613 -12.74782 -12.64944 -12.38032 -12.16698 -12.07630 -11.83862 -11.40118 -10.97942 -10.45510 -9.74295 -8.68086 -8.61617 -7.97582 -6.02322 0.69612 1.17377 1.38704 1.42225 1.49384 2.19351 2.25341 2.55219 2.76457 2.83992 3.21306 3.59612 4.15141 4.40370 4.46212 4.47219 4.47420 4.49894 4.72932 4.74871 4.77588 4.84417 4.91897 5.03347 5.16295 5.35455 5.60070 5.75692 5.94483 6.15707 6.34714 6.58092 6.76631 6.80189 6.96716 7.20678 7.30777 8.44848 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.010199 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.194290 B = 2744.623543 C = 3912.184382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C 0.085 3.915 4 C -0.270 4.270 5 C 0.025 3.975 6 O -0.334 6.334 7 C 0.027 3.973 8 C 0.029 3.971 9 C -0.485 4.485 10 H 0.064 0.936 11 C 0.031 3.969 12 N -0.844 5.844 13 Si 0.968 3.032 14 H -0.261 1.261 15 H -0.266 1.266 16 H -0.270 1.270 17 C 0.114 3.886 18 N -0.556 5.556 19 H 0.410 0.590 20 C 0.031 3.969 21 C -0.227 4.227 22 C -0.170 4.170 23 H 0.121 0.879 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.138 0.862 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.284 0.716 31 H 0.201 0.799 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 -4.286 2.464 6.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.249 6.249 3 C 0.040 3.960 4 C -0.290 4.290 5 C -0.022 4.022 6 O -0.249 6.249 7 C -0.068 4.068 8 C 0.025 3.975 9 C -0.517 4.517 10 H 0.082 0.918 11 C -0.179 4.179 12 N -0.475 5.475 13 Si 0.790 3.210 14 H -0.185 1.185 15 H -0.190 1.190 16 H -0.195 1.195 17 C 0.004 3.996 18 N -0.158 5.158 19 H 0.249 0.751 20 C -0.097 4.097 21 C -0.252 4.252 22 C -0.175 4.175 23 H 0.139 0.861 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.155 0.845 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.218 0.782 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.015 -4.235 2.287 5.680 hybrid contribution 0.125 1.046 -0.133 1.062 sum -2.890 -3.189 2.154 4.813 Atomic orbital electron populations 1.23144 0.78002 1.04720 1.01076 1.85838 1.22124 1.26981 1.89922 1.17890 0.89587 0.83690 1.04863 1.20728 0.99350 0.91162 1.17780 1.18459 0.90078 0.84494 1.09171 1.85903 1.18717 1.29946 1.90353 1.23070 0.78939 1.03985 1.00776 1.16186 0.88374 0.92340 1.00556 1.19066 1.06769 0.96528 1.29290 0.91768 1.26468 0.98573 1.00085 0.92782 1.70024 1.23243 1.38017 1.16221 0.85454 0.77600 0.78607 0.79314 1.18547 1.19011 1.19519 1.17843 0.84076 0.92814 1.04892 1.41703 1.05312 1.06969 1.61783 0.75083 1.22285 1.00347 0.82242 1.04806 1.21588 0.90314 0.98013 1.15320 1.18648 0.91012 0.94152 1.13647 0.86078 0.92905 0.93257 0.84460 0.93408 0.92929 0.86976 0.90541 0.78239 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.80 113.37 1.11 1.83 16 2 O -0.33 -13.57 10.49 -89.07 -0.93 -14.51 16 3 C 0.09 4.05 6.74 22.97 0.15 4.21 16 4 C -0.27 -12.47 7.99 22.40 0.18 -12.29 16 5 C 0.02 1.29 6.72 23.06 0.15 1.45 16 6 O -0.33 -16.07 9.87 -89.83 -0.89 -16.96 16 7 C 0.03 0.91 9.80 113.37 1.11 2.02 16 8 C 0.03 1.66 5.43 -21.10 -0.11 1.55 16 9 C -0.48 -27.25 8.51 23.24 0.20 -27.05 16 10 H 0.06 3.67 7.84 -2.91 -0.02 3.64 16 11 C 0.03 1.56 4.32 85.18 0.37 1.93 16 12 N -0.84 -43.84 10.62 21.81 0.23 -43.61 16 13 Si 0.97 38.95 29.60 68.60 2.03 40.98 16 14 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 15 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 17 C 0.11 6.08 6.13 39.56 0.24 6.32 16 18 N -0.56 -25.71 5.06 -186.66 -0.94 -26.66 16 19 H 0.41 18.39 6.81 -92.70 -0.63 17.76 16 20 C 0.03 1.21 11.83 83.05 0.98 2.19 16 21 C -0.23 -9.60 11.10 23.53 0.26 -9.34 16 22 C -0.17 -8.53 6.31 -20.12 -0.13 -8.66 16 23 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.05 1.40 7.65 -2.39 -0.02 1.39 16 25 H 0.05 1.35 7.65 -2.39 -0.02 1.33 16 26 H 0.14 5.25 4.41 -2.91 -0.01 5.24 16 27 H 0.05 1.49 7.64 -2.38 -0.02 1.47 16 28 H 0.05 1.58 7.64 -2.39 -0.02 1.56 16 29 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.28 13.42 8.30 -92.71 -0.77 12.65 16 31 H 0.20 5.47 8.06 -2.91 -0.02 5.45 16 32 H 0.15 5.48 8.06 -2.91 -0.02 5.45 16 Total: -1.00 -68.72 271.97 4.54 -64.18 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.53 Total: 32.40 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 4.52 Total: -35.84 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -0.71 Total: -70.27 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.82 Total: -31.46 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -68.72 4.54 -64.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077876.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.339 kcal (2) G-P(sol) polarization free energy of solvation -68.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds