Wall clock time and date at job start Mon Mar 30 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47534 * 2 1 4 4 C 1.50691 * 109.47420 * 239.99488 * 2 1 3 5 5 H 1.08002 * 120.00454 * 240.00156 * 4 2 1 6 6 C 1.37886 * 119.99987 * 60.00232 * 4 2 1 7 7 N 1.31510 * 119.99557 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00196 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47213 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47207 * 119.99652 * 8 6 4 11 11 H 1.48497 * 109.47349 * 239.99931 * 8 6 4 12 12 C 1.50710 * 109.46756 * 119.99502 * 2 1 3 13 13 C 1.38361 * 120.06029 * 59.98272 * 12 2 1 14 14 C 1.38231 * 120.25658 * 180.02562 * 13 12 2 15 15 C 1.38335 * 120.19997 * 359.94091 * 14 13 12 16 16 C 1.38460 * 119.81470 * 0.08595 * 15 14 13 17 17 C 1.38347 * 120.06245 * 239.99907 * 12 2 1 18 18 O 1.35983 * 120.67237 * 0.08038 * 17 12 2 19 19 C 1.43004 * 116.71299 * 147.16198 * 18 17 12 20 20 C 1.50742 * 109.73673 * 46.21491 * 19 18 17 21 21 O 1.21291 * 120.11793 * 148.88971 * 20 19 18 22 22 N 1.35084 * 119.74787 * 329.09187 * 20 19 18 23 23 H 1.08999 * 109.47257 * 60.00409 * 1 2 3 24 24 H 1.08997 * 109.47183 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47477 * 300.00274 * 1 2 3 26 26 H 0.97001 * 119.99741 * 179.97438 * 7 6 4 27 27 H 1.08003 * 119.87018 * 359.97438 * 13 12 2 28 28 H 1.07996 * 119.90085 * 179.97438 * 14 13 12 29 29 H 1.08001 * 120.09012 * 180.02562 * 15 14 13 30 30 H 1.08996 * 109.44208 * 166.44939 * 19 18 17 31 31 H 1.09004 * 109.43908 * 286.37993 * 19 18 17 32 32 H 0.97001 * 120.51161 * 181.49737 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1465 -2.2871 -3.6036 10 1 1.1662 -1.5869 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 6 2.0322 -0.7104 1.2306 13 6 1.6984 -2.0349 1.4511 14 6 2.1564 -2.6902 2.5787 15 6 2.9530 -2.0261 3.4941 16 6 3.2901 -0.7004 3.2794 17 6 2.8277 -0.0392 2.1421 18 8 3.1640 1.2632 1.9425 19 6 3.3175 2.0737 3.1106 20 6 4.1458 1.3399 4.1342 21 8 4.8563 1.9580 4.8987 22 7 4.0969 -0.0087 4.1940 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7097 1.1617 -3.4844 27 1 1.0768 -2.5585 0.7398 28 1 1.8920 -3.7240 2.7453 29 1 3.3102 -2.5399 4.3743 30 1 3.8125 3.0070 2.8421 31 1 2.3363 2.2917 3.5324 32 1 4.6086 -0.4909 4.8623 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261081083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:00 Heat of formation + Delta-G solvation = -49.711656 kcal Electronic energy + Delta-G solvation = -17806.155299 eV Core-core repulsion = 14924.768015 eV Total energy + Delta-G solvation = -2881.387284 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11426 -38.73019 -37.10323 -35.51560 -33.75860 -31.30622 -29.68825 -28.19473 -27.42001 -25.14621 -23.20139 -22.95251 -20.11128 -19.61987 -18.34478 -17.25403 -16.65282 -16.29500 -15.52868 -15.07882 -14.81643 -14.52905 -14.16342 -13.99473 -13.15627 -12.91375 -12.65441 -12.36117 -11.76247 -11.58157 -11.20584 -10.99868 -10.93411 -10.91560 -10.44469 -10.20390 -10.09500 -9.99125 -9.46705 -9.00324 -8.37704 -7.84738 -7.60441 -6.01987 -4.08395 1.43900 1.77883 2.49008 2.92642 3.28714 3.37180 3.40987 3.67425 4.14914 4.22415 4.44086 4.97379 5.10645 5.26859 5.30832 5.36661 5.59396 5.83792 5.94165 6.26455 6.35682 6.59544 6.69885 6.80877 6.97325 7.00226 7.09808 7.14567 7.30909 7.70109 7.72805 7.87456 7.97405 8.07437 8.35941 8.93997 9.55819 11.03937 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.006961 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.328778 B = 4021.374718 C = 4445.324025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.073 3.927 3 H 0.048 0.952 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.017 4.017 13 C -0.101 4.101 14 C -0.117 4.117 15 C -0.149 4.149 16 C 0.079 3.921 17 C 0.065 3.935 18 O -0.287 6.287 19 C 0.048 3.952 20 C 0.492 3.508 21 O -0.529 6.529 22 N -0.657 5.657 23 H 0.087 0.913 24 H 0.029 0.971 25 H 0.008 0.992 26 H 0.260 0.740 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.094 0.906 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -3.348 10.584 11.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 H 0.066 0.934 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.018 4.018 13 C -0.120 4.120 14 C -0.135 4.135 15 C -0.169 4.169 16 C -0.015 4.015 17 C 0.019 3.981 18 O -0.201 6.201 19 C -0.030 4.030 20 C 0.279 3.721 21 O -0.406 6.406 22 N -0.304 5.304 23 H 0.106 0.894 24 H 0.048 0.952 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.152 0.848 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.112 0.888 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.466 -2.643 10.573 10.997 hybrid contribution 0.634 -0.777 -0.277 1.040 sum 2.100 -3.420 10.297 11.051 Atomic orbital electron populations 1.21798 0.97433 0.99298 1.00381 1.17854 0.92777 0.96338 0.87596 0.93391 1.21115 1.31264 1.12338 0.89742 0.92370 1.24938 0.95043 0.94977 0.98906 1.69891 1.36666 1.22792 1.23329 0.86530 0.78645 0.79743 0.83078 1.19752 1.21011 1.21031 1.20270 0.91278 0.94063 0.96214 1.21044 1.00361 0.93703 0.96891 1.20921 0.98395 0.99642 0.94579 1.20353 1.02982 0.92309 1.01293 1.18009 0.98407 0.93542 0.91590 1.18544 1.00460 0.84206 0.94869 1.86406 1.85819 1.18644 1.29225 1.23103 1.00468 0.94701 0.84767 1.21698 0.82831 0.82471 0.85061 1.90759 1.40153 1.66604 1.43049 1.43671 1.45878 1.06692 1.34120 0.89448 0.95209 0.97328 0.92981 0.84764 0.85929 0.86082 0.84179 0.88829 0.75181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.78 37.16 0.33 -2.69 16 2 C 0.07 1.76 2.45 -92.93 -0.23 1.53 16 3 H 0.05 1.28 7.03 -51.93 -0.36 0.92 16 4 C -0.51 -13.37 8.24 -34.44 -0.28 -13.66 16 5 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 8 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C -0.02 -0.35 4.74 -104.53 -0.50 -0.85 16 13 C -0.10 -1.81 8.71 -39.54 -0.34 -2.16 16 14 C -0.12 -1.70 10.04 -39.55 -0.40 -2.09 16 15 C -0.15 -2.08 9.95 -39.46 -0.39 -2.47 16 16 C 0.08 1.26 6.54 -83.49 -0.55 0.72 16 17 C 0.07 1.24 6.41 -39.09 -0.25 0.99 16 18 O -0.29 -5.45 9.26 -19.69 -0.18 -5.63 16 19 C 0.05 0.70 7.16 36.03 0.26 0.96 16 20 C 0.49 7.61 7.94 -10.83 -0.09 7.53 16 21 O -0.53 -9.25 17.95 5.55 0.10 -9.16 16 22 N -0.66 -9.40 5.47 -9.67 -0.05 -9.45 16 23 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 24 H 0.03 0.63 7.39 -51.93 -0.38 0.25 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.13 2.38 7.57 -52.48 -0.40 1.98 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.14 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.41 4.82 8.89 -40.82 -0.36 4.46 16 LS Contribution 274.55 15.07 4.14 4.14 Total: -1.00 -29.99 274.55 -6.40 -36.39 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -3.47 Total: 2.56 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -2.53 Total: -10.60 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.57 Total: -33.47 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.08 Total: -14.79 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.99 -6.40 -36.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.322 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds