Wall clock time and date at job start Mon Mar 30 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47534 * 2 1 4 4 C 1.50691 * 109.47420 * 239.99488 * 2 1 3 5 5 H 1.08002 * 120.00454 * 240.00156 * 4 2 1 6 6 C 1.37886 * 119.99987 * 60.00232 * 4 2 1 7 7 N 1.31510 * 119.99557 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00196 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47213 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47207 * 119.99652 * 8 6 4 11 11 H 1.48497 * 109.47349 * 239.99931 * 8 6 4 12 12 C 1.50710 * 109.46756 * 119.99502 * 2 1 3 13 13 C 1.38361 * 120.06029 * 59.98272 * 12 2 1 14 14 C 1.38231 * 120.25658 * 180.02562 * 13 12 2 15 15 C 1.38335 * 120.19997 * 359.94091 * 14 13 12 16 16 C 1.38460 * 119.81470 * 0.08595 * 15 14 13 17 17 C 1.38347 * 120.06245 * 239.99907 * 12 2 1 18 18 O 1.35983 * 120.67237 * 0.08038 * 17 12 2 19 19 C 1.43004 * 116.71299 * 147.16198 * 18 17 12 20 20 C 1.50742 * 109.73673 * 46.21491 * 19 18 17 21 21 O 1.21291 * 120.11793 * 148.88971 * 20 19 18 22 22 N 1.35084 * 119.74787 * 329.09187 * 20 19 18 23 23 H 1.08999 * 109.47257 * 60.00409 * 1 2 3 24 24 H 1.08997 * 109.47183 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47477 * 300.00274 * 1 2 3 26 26 H 0.97001 * 119.99741 * 179.97438 * 7 6 4 27 27 H 1.08003 * 119.87018 * 359.97438 * 13 12 2 28 28 H 1.07996 * 119.90085 * 179.97438 * 14 13 12 29 29 H 1.08001 * 120.09012 * 180.02562 * 15 14 13 30 30 H 1.08996 * 109.44208 * 166.44939 * 19 18 17 31 31 H 1.09004 * 109.43908 * 286.37993 * 19 18 17 32 32 H 0.97001 * 120.51161 * 181.49737 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1465 -2.2871 -3.6036 10 1 1.1662 -1.5869 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 6 2.0322 -0.7104 1.2306 13 6 1.6984 -2.0349 1.4511 14 6 2.1564 -2.6902 2.5787 15 6 2.9530 -2.0261 3.4941 16 6 3.2901 -0.7004 3.2794 17 6 2.8277 -0.0392 2.1421 18 8 3.1640 1.2632 1.9425 19 6 3.3175 2.0737 3.1106 20 6 4.1458 1.3399 4.1342 21 8 4.8563 1.9580 4.8987 22 7 4.0969 -0.0087 4.1940 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7097 1.1617 -3.4844 27 1 1.0768 -2.5585 0.7398 28 1 1.8920 -3.7240 2.7453 29 1 3.3102 -2.5399 4.3743 30 1 3.8125 3.0070 2.8421 31 1 2.3363 2.2917 3.5324 32 1 4.6086 -0.4909 4.8623 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261081083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:00 Heat of formation + Delta-G solvation = -69.329633 kcal Electronic energy + Delta-G solvation = -17807.005998 eV Core-core repulsion = 14924.768015 eV Total energy + Delta-G solvation = -2882.237984 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.38213 -40.04015 -38.42400 -36.98523 -35.38306 -33.05899 -30.97394 -29.69791 -28.65126 -27.16143 -24.52213 -24.42738 -21.69042 -20.87824 -19.63862 -18.60007 -18.22893 -17.80302 -16.96599 -16.66396 -16.17109 -15.98383 -15.50486 -15.23055 -14.78040 -14.40240 -14.16950 -13.68676 -13.40263 -13.12299 -12.84321 -12.74762 -12.65604 -12.26418 -12.17135 -11.93392 -11.63548 -11.42562 -11.02185 -10.90240 -10.41385 -9.24166 -8.87296 -8.05195 -6.18311 0.16262 0.49533 1.25450 1.42980 1.45615 1.56201 1.76133 2.43896 2.46120 2.89038 3.00583 3.23332 3.75842 4.00702 4.15143 4.25443 4.46169 4.51319 4.68381 4.80792 4.98339 5.09435 5.21125 5.30066 5.39343 5.52909 5.61448 5.70863 5.78337 5.91122 6.08442 6.12336 6.39129 6.45696 6.72535 6.91134 7.48887 8.99668 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.006961 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.328778 B = 4021.374718 C = 4445.324025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.075 3.925 3 H 0.008 0.992 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.277 1.277 11 H -0.286 1.286 12 C -0.053 4.053 13 C -0.112 4.112 14 C -0.103 4.103 15 C -0.129 4.129 16 C 0.079 3.921 17 C 0.044 3.956 18 O -0.318 6.318 19 C 0.043 3.957 20 C 0.494 3.506 21 O -0.551 6.551 22 N -0.646 5.646 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.022 0.978 26 H 0.260 0.740 27 H 0.128 0.872 28 H 0.164 0.836 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.113 0.887 32 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -5.407 12.206 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 H 0.027 0.973 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.778 3.222 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.212 1.212 12 C -0.054 4.054 13 C -0.131 4.131 14 C -0.121 4.121 15 C -0.149 4.149 16 C -0.016 4.016 17 C -0.001 4.001 18 O -0.233 6.233 19 C -0.035 4.035 20 C 0.282 3.718 21 O -0.429 6.429 22 N -0.293 5.293 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.181 0.819 29 H 0.184 0.816 30 H 0.175 0.825 31 H 0.131 0.869 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.057 -4.724 12.212 13.255 hybrid contribution 0.471 -0.143 -0.695 0.851 sum 2.528 -4.867 11.518 12.757 Atomic orbital electron populations 1.21621 0.97096 0.99537 0.99541 1.17600 0.93130 0.94451 0.89149 0.97334 1.21425 1.30866 1.12187 0.91035 0.92810 1.25694 0.95366 0.95707 1.01719 1.70026 1.37782 1.24072 1.23809 0.85590 0.78213 0.78704 0.79678 1.19099 1.20314 1.21187 1.19994 0.94046 0.95475 0.95908 1.21092 1.00835 0.92783 0.98371 1.21298 0.96890 1.01172 0.92742 1.20866 1.00866 0.91121 1.02009 1.18060 0.98383 0.94312 0.90826 1.18678 1.01047 0.84470 0.95928 1.86352 1.86043 1.19325 1.31555 1.23368 1.01727 0.94611 0.83772 1.21737 0.82426 0.82873 0.84717 1.90755 1.41078 1.67086 1.43985 1.43536 1.45521 1.06348 1.33905 0.92367 0.94273 0.95902 0.93045 0.85398 0.81874 0.81633 0.82498 0.86905 0.73470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.78 71.98 0.63 -5.07 16 2 C 0.08 3.77 2.45 -12.29 -0.03 3.74 16 3 H 0.01 0.48 7.03 -2.39 -0.02 0.47 16 4 C -0.52 -28.01 8.24 25.60 0.21 -27.80 16 5 H 0.05 2.88 7.60 -2.91 -0.02 2.86 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.59 11.32 21.45 0.24 -52.35 16 8 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 12 C -0.05 -2.20 4.74 -19.81 -0.09 -2.29 16 13 C -0.11 -3.85 8.71 22.30 0.19 -3.65 16 14 C -0.10 -2.57 10.04 22.29 0.22 -2.35 16 15 C -0.13 -3.00 9.95 22.35 0.22 -2.78 16 16 C 0.08 2.33 6.54 38.14 0.25 2.57 16 17 C 0.04 1.68 6.41 22.59 0.14 1.82 16 18 O -0.32 -12.31 9.26 -93.36 -0.86 -13.18 16 19 C 0.04 1.23 7.16 71.25 0.51 1.74 16 20 C 0.49 14.57 7.94 87.62 0.70 15.27 16 21 O -0.55 -18.49 17.95 -3.06 -0.05 -18.54 16 22 N -0.65 -16.78 5.47 -302.72 -1.66 -18.44 16 23 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 24 H 0.04 1.71 7.39 -2.39 -0.02 1.69 16 25 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 27 H 0.13 4.44 7.57 -2.91 -0.02 4.42 16 28 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 29 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.16 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.42 8.51 8.89 -92.71 -0.82 7.69 16 Total: -1.00 -66.77 274.55 3.43 -63.34 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.33 Total: 11.54 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 3.41 Total: -17.60 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.41 Total: -70.79 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.92 Total: -31.72 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.77 3.43 -63.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261081083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.993 kcal (2) G-P(sol) polarization free energy of solvation -66.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds