Wall clock time and date at job start Mon Mar 30 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34207 * 125.04109 * 2 1 4 4 C 1.46507 * 106.99441 * 179.97438 * 3 2 1 5 5 C 1.40621 * 106.06696 * 359.97438 * 4 3 2 6 6 C 1.39131 * 119.44433 * 179.70466 * 5 4 3 7 7 C 1.37750 * 119.96123 * 0.57151 * 6 5 4 8 8 C 1.38798 * 120.68955 * 359.44123 * 7 6 5 9 9 C 1.50706 * 119.81963 * 180.27969 * 8 7 6 10 10 C 1.50700 * 109.47243 * 265.00157 * 9 8 7 11 11 H 1.08009 * 119.99402 * 359.97438 * 10 9 8 12 12 C 1.37866 * 120.00119 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00205 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00002 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47201 * 59.99705 * 14 12 10 16 16 H 1.48502 * 109.46992 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47142 * 299.99501 * 14 12 10 18 18 C 1.37862 * 120.35799 * 0.26216 * 8 7 6 19 19 F 1.35098 * 120.19769 * 180.02562 * 18 8 7 20 20 N 1.36883 * 125.03989 * 179.97438 * 2 1 3 21 21 C 1.46503 * 125.06399 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.47226 * 90.03117 * 1 2 3 23 23 H 1.09009 * 109.46828 * 210.02917 * 1 2 3 24 24 H 1.09004 * 109.47249 * 330.02647 * 1 2 3 25 25 H 1.08003 * 126.49979 * 359.96951 * 3 2 1 26 26 H 1.08002 * 120.02282 * 180.29046 * 6 5 4 27 27 H 1.08002 * 119.65714 * 179.72731 * 7 6 5 28 28 H 1.09002 * 109.47230 * 25.00281 * 9 8 7 29 29 H 1.08999 * 109.47180 * 145.00524 * 9 8 7 30 30 H 0.97002 * 119.99756 * 180.02562 * 13 12 10 31 31 H 1.08994 * 109.47047 * 89.97398 * 21 20 2 32 32 H 1.09004 * 109.46805 * 209.96909 * 21 20 2 33 33 H 1.08997 * 109.46969 * 329.97023 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0988 0.0000 4 6 3.6706 0.6449 0.0006 5 6 3.6220 -0.7604 0.0016 6 6 4.8092 -1.4858 -0.0039 7 6 6.0185 -0.8262 0.0017 8 6 6.0688 0.5609 0.0012 9 6 7.4026 1.2624 0.0010 10 6 7.7895 1.6064 1.4163 11 1 7.1347 1.3436 2.2341 12 6 8.9787 2.2573 1.6671 13 7 9.7757 2.5777 0.6712 14 14 9.4586 2.6830 3.4215 15 1 9.5551 1.4375 4.2244 16 1 10.7728 3.3744 3.4213 17 1 8.4296 3.5751 4.0136 18 6 4.9053 1.3003 0.0005 19 9 4.9580 2.6503 -0.0006 20 7 2.2929 -1.1207 0.0005 21 6 1.7943 -2.4983 0.0006 22 1 -0.3633 -0.0006 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5134 25 1 1.9356 2.1233 -0.0005 26 1 4.7828 -2.5655 -0.0080 27 1 6.9371 -1.3942 0.0019 28 1 8.1578 0.6071 -0.4330 29 1 7.3324 2.1764 -0.5887 30 1 10.6126 3.0354 0.8477 31 1 1.6706 -2.8400 -1.0270 32 1 2.5077 -3.1428 0.5143 33 1 0.8339 -2.5371 0.5145 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261082262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:33 Heat of formation + Delta-G solvation = 2.415335 kcal Electronic energy + Delta-G solvation = -17285.023221 eV Core-core repulsion = 14418.269122 eV Total energy + Delta-G solvation = -2866.754099 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.84762 -40.98764 -36.90845 -33.17934 -32.73214 -31.33720 -29.88878 -27.96102 -25.99058 -25.67179 -22.98073 -21.31508 -20.24710 -19.50588 -17.08019 -16.28340 -16.11030 -15.48216 -14.99178 -14.78848 -14.45276 -14.39282 -13.74188 -13.29611 -13.24032 -12.74492 -12.39326 -12.32326 -12.26385 -12.08424 -11.88178 -11.34522 -11.26943 -10.83740 -10.54024 -10.42213 -10.34163 -9.53219 -9.33070 -8.97358 -8.34264 -7.57053 -6.99753 -5.95648 -3.99269 1.50290 2.12657 2.90990 2.93866 3.38056 3.41322 3.45391 4.31811 4.54171 4.69756 4.71418 4.95027 5.08214 5.16686 5.25476 5.32816 5.39261 5.41507 5.55010 5.68373 5.76651 5.82424 5.92378 6.23937 6.45697 6.65345 6.91547 7.01132 7.08846 7.21909 7.54765 7.57456 7.75490 7.81058 7.99068 8.39348 9.04365 9.63701 11.13912 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.035579 B = 0.005649 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.800932 B = 4955.778201 C = 5187.384055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.063 3.937 3 C -0.192 4.192 4 C -0.142 4.142 5 C 0.105 3.895 6 C -0.151 4.151 7 C -0.067 4.067 8 C -0.097 4.097 9 C 0.055 3.945 10 C -0.509 4.509 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.134 3.866 19 F -0.133 7.133 20 N -0.489 5.489 21 C 0.082 3.918 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.143 0.857 26 H 0.115 0.885 27 H 0.132 0.868 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.977 -9.271 -2.211 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.217 4.217 4 C -0.147 4.147 5 C 0.001 3.999 6 C -0.172 4.172 7 C -0.086 4.086 8 C -0.099 4.099 9 C 0.018 3.982 10 C -0.547 4.547 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.114 3.886 19 F -0.111 7.111 20 N -0.175 5.175 21 C -0.060 4.060 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.161 0.839 26 H 0.133 0.867 27 H 0.150 0.850 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.956 -9.447 -2.251 19.540 hybrid contribution 0.352 0.429 0.997 1.141 sum -16.604 -9.017 -1.254 18.936 Atomic orbital electron populations 1.20401 0.88154 1.03215 1.02660 1.20148 0.93126 0.85482 1.05552 1.21310 0.90121 0.97549 1.12741 1.19029 0.92705 0.92823 1.10099 1.17811 0.84089 0.92785 1.05247 1.19906 0.89569 0.98481 1.09252 1.20665 0.96555 0.93314 0.98049 1.20508 0.96531 0.93700 0.99112 1.18223 0.86612 0.95423 0.97943 1.21014 1.04259 1.37581 0.91854 0.92640 1.24979 0.96391 0.95677 0.97154 1.69949 1.11702 1.40936 1.30832 0.86609 0.77612 0.78655 0.84888 1.20211 1.21235 1.20168 1.16897 0.91621 0.76799 1.03316 1.91439 1.97151 1.28999 1.93553 1.43577 1.03746 1.05364 1.64811 1.21818 1.00649 0.80992 1.02497 0.90874 0.91743 0.89995 0.83904 0.86707 0.85032 0.95010 0.95034 0.92854 0.91732 0.90255 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.03 36.01 0.36 -0.40 16 2 C 0.06 0.86 6.83 -81.76 -0.56 0.30 16 3 C -0.19 -3.19 10.95 -37.67 -0.41 -3.60 16 4 C -0.14 -2.82 6.36 -105.09 -0.67 -3.49 16 5 C 0.11 1.85 6.80 -84.00 -0.57 1.28 16 6 C -0.15 -2.56 9.95 -39.43 -0.39 -2.95 16 7 C -0.07 -1.30 9.64 -39.55 -0.38 -1.69 16 8 C -0.10 -2.24 5.07 -104.55 -0.53 -2.77 16 9 C 0.05 1.48 4.87 -29.03 -0.14 1.34 16 10 C -0.51 -14.86 9.09 -34.44 -0.31 -15.17 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 14 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.13 3.04 7.28 -39.14 -0.28 2.76 16 19 F -0.13 -3.22 16.56 2.25 0.04 -3.18 16 20 N -0.49 -6.90 3.18 -117.19 -0.37 -7.28 16 21 C 0.08 0.75 10.80 59.85 0.65 1.40 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.46 6.92 -51.92 -0.36 0.10 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.14 2.13 8.06 -52.48 -0.42 1.71 16 26 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 28 H 0.03 0.87 8.05 -51.93 -0.42 0.45 16 29 H 0.03 0.92 7.78 -51.93 -0.40 0.51 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.08 0.53 6.88 -51.93 -0.36 0.17 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -33.29 289.39 -7.64 -40.93 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -4.04 Total: -4.27 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -3.34 Total: -21.36 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.36 Total: -33.70 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.04 Total: -3.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.29 -7.64 -40.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.348 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds