Wall clock time and date at job start Mon Mar 30 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34207 * 125.04109 * 2 1 4 4 C 1.46507 * 106.99441 * 179.97438 * 3 2 1 5 5 C 1.40621 * 106.06696 * 359.97438 * 4 3 2 6 6 C 1.39131 * 119.44433 * 179.70466 * 5 4 3 7 7 C 1.37750 * 119.96123 * 0.57151 * 6 5 4 8 8 C 1.38798 * 120.68955 * 359.44123 * 7 6 5 9 9 C 1.50706 * 119.81963 * 180.27969 * 8 7 6 10 10 C 1.50700 * 109.47243 * 265.00157 * 9 8 7 11 11 H 1.08009 * 119.99402 * 359.97438 * 10 9 8 12 12 C 1.37866 * 120.00119 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00205 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00002 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47201 * 59.99705 * 14 12 10 16 16 H 1.48502 * 109.46992 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47142 * 299.99501 * 14 12 10 18 18 C 1.37862 * 120.35799 * 0.26216 * 8 7 6 19 19 F 1.35098 * 120.19769 * 180.02562 * 18 8 7 20 20 N 1.36883 * 125.03989 * 179.97438 * 2 1 3 21 21 C 1.46503 * 125.06399 * 0.02562 * 20 2 1 22 22 H 1.08996 * 109.47226 * 90.03117 * 1 2 3 23 23 H 1.09009 * 109.46828 * 210.02917 * 1 2 3 24 24 H 1.09004 * 109.47249 * 330.02647 * 1 2 3 25 25 H 1.08003 * 126.49979 * 359.96951 * 3 2 1 26 26 H 1.08002 * 120.02282 * 180.29046 * 6 5 4 27 27 H 1.08002 * 119.65714 * 179.72731 * 7 6 5 28 28 H 1.09002 * 109.47230 * 25.00281 * 9 8 7 29 29 H 1.08999 * 109.47180 * 145.00524 * 9 8 7 30 30 H 0.97002 * 119.99756 * 180.02562 * 13 12 10 31 31 H 1.08994 * 109.47047 * 89.97398 * 21 20 2 32 32 H 1.09004 * 109.46805 * 209.96909 * 21 20 2 33 33 H 1.08997 * 109.46969 * 329.97023 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0988 0.0000 4 6 3.6706 0.6449 0.0006 5 6 3.6220 -0.7604 0.0016 6 6 4.8092 -1.4858 -0.0039 7 6 6.0185 -0.8262 0.0017 8 6 6.0688 0.5609 0.0012 9 6 7.4026 1.2624 0.0010 10 6 7.7895 1.6064 1.4163 11 1 7.1347 1.3436 2.2341 12 6 8.9787 2.2573 1.6671 13 7 9.7757 2.5777 0.6712 14 14 9.4586 2.6830 3.4215 15 1 9.5551 1.4375 4.2244 16 1 10.7728 3.3744 3.4213 17 1 8.4296 3.5751 4.0136 18 6 4.9053 1.3003 0.0005 19 9 4.9580 2.6503 -0.0006 20 7 2.2929 -1.1207 0.0005 21 6 1.7943 -2.4983 0.0006 22 1 -0.3633 -0.0006 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5134 25 1 1.9356 2.1233 -0.0005 26 1 4.7828 -2.5655 -0.0080 27 1 6.9371 -1.3942 0.0019 28 1 8.1578 0.6071 -0.4330 29 1 7.3324 2.1764 -0.5887 30 1 10.6126 3.0354 0.8477 31 1 1.6706 -2.8400 -1.0270 32 1 2.5077 -3.1428 0.5143 33 1 0.8339 -2.5371 0.5145 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261082262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:33 Heat of formation + Delta-G solvation = -16.877747 kcal Electronic energy + Delta-G solvation = -17285.859832 eV Core-core repulsion = 14418.269122 eV Total energy + Delta-G solvation = -2867.590710 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.62916 -42.24195 -38.40721 -35.25810 -33.83012 -32.87375 -31.27657 -29.47679 -27.49914 -26.79990 -24.89584 -22.73309 -21.86956 -20.68462 -18.55718 -18.43025 -17.50639 -16.83482 -16.68920 -16.18729 -16.07921 -16.02152 -15.16537 -14.42110 -14.38161 -14.04297 -13.90470 -13.65105 -13.50382 -13.30016 -13.18045 -13.01651 -12.83236 -12.62583 -12.44328 -12.05351 -11.96031 -11.52946 -11.30147 -10.61136 -10.37206 -9.00594 -8.43817 -8.16652 -6.33889 0.07324 0.59120 1.37223 1.41536 1.49598 1.68310 1.86070 2.39133 2.82433 3.09648 3.50339 3.70399 3.84838 4.03096 4.18534 4.24026 4.44282 4.48031 4.52225 4.60997 4.74530 4.82693 4.86022 5.01990 5.11121 5.13638 5.29083 5.31577 5.44368 5.67583 5.72060 5.82454 5.87240 6.14106 6.27324 6.45702 6.76283 7.33838 8.89206 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.035579 B = 0.005649 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.800932 B = 4955.778201 C = 5187.384055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.096 3.904 3 C -0.240 4.240 4 C -0.162 4.162 5 C 0.096 3.904 6 C -0.120 4.120 7 C -0.086 4.086 8 C -0.123 4.123 9 C 0.066 3.934 10 C -0.529 4.529 11 H 0.049 0.951 12 C 0.005 3.995 13 N -0.930 5.930 14 Si 0.967 3.033 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.274 1.274 18 C 0.094 3.906 19 F -0.157 7.157 20 N -0.482 5.482 21 C 0.069 3.931 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.146 0.854 26 H 0.162 0.838 27 H 0.142 0.858 28 H 0.016 0.984 29 H -0.008 1.008 30 H 0.266 0.734 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.925 -12.005 -1.096 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.265 4.265 4 C -0.167 4.167 5 C -0.011 4.011 6 C -0.141 4.141 7 C -0.105 4.105 8 C -0.125 4.125 9 C 0.029 3.971 10 C -0.567 4.567 11 H 0.067 0.933 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.790 3.210 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.199 1.199 18 C 0.074 3.926 19 F -0.136 7.136 20 N -0.166 5.166 21 C -0.070 4.070 22 H 0.112 0.888 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.164 0.836 26 H 0.179 0.821 27 H 0.159 0.841 28 H 0.034 0.966 29 H 0.010 0.990 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.927 -12.218 -1.143 23.402 hybrid contribution 1.063 1.178 0.582 1.690 sum -18.864 -11.040 -0.561 21.864 Atomic orbital electron populations 1.20624 0.83861 1.05221 1.04550 1.20905 0.95370 0.84283 1.00591 1.21526 0.89118 0.99226 1.16610 1.19377 0.92999 0.94471 1.09898 1.18011 0.86133 0.91877 1.05063 1.20231 0.88043 1.00472 1.05328 1.20738 0.98486 0.91711 0.99600 1.20283 0.94625 0.95439 1.02203 1.17915 0.88924 0.93813 0.96466 1.21297 1.04623 1.38159 0.92632 0.93271 1.25932 0.96152 0.95211 1.01995 1.70078 1.12165 1.41433 1.33270 0.85485 0.77486 0.78878 0.79122 1.18679 1.20052 1.19899 1.17241 0.93161 0.76033 1.06176 1.91354 1.97355 1.30718 1.94133 1.44001 1.02254 1.07657 1.62641 1.22301 1.02328 0.77898 1.04521 0.88813 0.88904 0.88877 0.83592 0.82086 0.84055 0.96564 0.98955 0.92472 0.89746 0.89111 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 10.03 71.24 0.71 -0.34 16 2 C 0.10 2.32 6.83 40.85 0.28 2.60 16 3 C -0.24 -7.89 10.95 23.51 0.26 -7.63 16 4 C -0.16 -6.58 6.36 -20.17 -0.13 -6.71 16 5 C 0.10 3.18 6.80 39.02 0.27 3.45 16 6 C -0.12 -3.83 9.95 22.37 0.22 -3.60 16 7 C -0.09 -3.43 9.64 22.29 0.21 -3.21 16 8 C -0.12 -6.12 5.07 -19.82 -0.10 -6.22 16 9 C 0.07 3.85 4.87 29.10 0.14 3.99 16 10 C -0.53 -32.56 9.09 25.60 0.23 -32.33 16 11 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 12 C 0.01 0.31 5.46 84.65 0.46 0.78 16 13 N -0.93 -58.64 13.29 21.44 0.28 -58.36 16 14 Si 0.97 46.56 29.54 68.60 2.03 48.59 16 15 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 18 C 0.09 4.56 7.28 22.55 0.16 4.73 16 19 F -0.16 -8.32 16.56 44.97 0.74 -7.57 16 20 N -0.48 -11.68 3.18 -524.69 -1.67 -13.35 16 21 C 0.07 0.85 10.80 127.77 1.38 2.24 16 22 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.09 0.69 6.92 -2.38 -0.02 0.67 16 24 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 26 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 27 H 0.14 5.17 8.06 -2.91 -0.02 5.15 16 28 H 0.02 0.96 8.05 -2.39 -0.02 0.94 16 29 H -0.01 -0.51 7.78 -2.39 -0.02 -0.52 16 30 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.99 8.10 -2.38 -0.02 0.97 16 33 H 0.11 0.73 6.88 -2.39 -0.02 0.72 16 Total: -1.00 -78.59 289.39 6.60 -71.99 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: 1.11 Total: 0.97 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 4.11 Total: -42.27 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.38 Total: -71.70 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.74 Total: -7.57 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.59 6.60 -71.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.115 kcal (2) G-P(sol) polarization free energy of solvation -78.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds