Wall clock time and date at job start Mon Mar 30 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48493 * 109.47465 * 89.99987 * 3 2 1 5 5 H 1.48506 * 109.46873 * 209.99743 * 3 2 1 6 6 H 1.48505 * 109.47114 * 329.99425 * 3 2 1 7 7 C 1.37876 * 119.99410 * 180.27126 * 2 1 3 8 8 H 1.07999 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00452 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46683 * 300.00344 * 9 7 2 11 11 C 1.53002 * 109.46895 * 59.99650 * 9 7 2 12 12 N 1.46899 * 109.46912 * 185.00178 * 11 9 7 13 13 C 1.50697 * 109.47236 * 180.02562 * 9 7 2 14 14 C 1.38161 * 120.02802 * 299.72193 * 13 9 7 15 15 C 1.38244 * 120.05287 * 179.77099 * 14 13 9 16 16 C 1.38287 * 120.11481 * 0.51289 * 15 14 13 17 17 C 1.38118 * 120.05407 * 359.73720 * 16 15 14 18 18 C 1.38721 * 120.02654 * 120.00248 * 13 9 7 19 19 O 1.35897 * 120.05470 * 359.97438 * 18 13 9 20 20 C 1.42901 * 117.00009 * 174.39536 * 19 18 13 21 21 C 1.52996 * 117.49879 * 224.82547 * 20 19 18 22 22 C 1.52998 * 117.50224 * 156.20122 * 20 19 18 23 23 H 0.97006 * 119.99311 * 359.73217 * 1 2 3 24 24 H 1.08996 * 109.47137 * 305.00025 * 11 9 7 25 25 H 1.08998 * 109.46546 * 65.00538 * 11 9 7 26 26 H 1.00905 * 111.00124 * 180.02562 * 12 11 9 27 27 H 1.00906 * 111.00294 * 303.95963 * 12 11 9 28 28 H 1.08001 * 119.97395 * 0.02562 * 14 13 9 29 29 H 1.08002 * 119.94415 * 180.24917 * 15 14 13 30 30 H 1.08004 * 119.97265 * 179.77191 * 16 15 14 31 31 H 1.08000 * 120.02731 * 180.02562 * 17 16 15 32 32 H 1.09000 * 115.54765 * 10.53311 * 20 19 18 33 33 H 1.09002 * 117.49702 * 0.02562 * 21 20 19 34 34 H 1.08997 * 117.49882 * 145.01094 * 21 20 19 35 35 H 1.08992 * 117.50084 * 214.97744 * 22 20 19 36 36 H 1.08999 * 117.49650 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5469 1.4399 -0.7000 6 1 1.4468 2.6526 -0.7002 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1942 -0.0052 9 6 1.2509 -2.4992 -0.0124 10 1 0.6239 -2.5612 0.8770 11 6 0.3717 -2.5739 -1.2624 12 7 -0.4517 -3.7893 -1.2099 13 6 2.2301 -3.6446 -0.0171 14 6 3.1310 -3.7799 -1.0558 15 6 4.0327 -4.8278 -1.0583 16 6 4.0285 -5.7491 -0.0270 17 6 3.1265 -5.6212 1.0111 18 6 2.2239 -4.5674 1.0187 19 8 1.3353 -4.4395 2.0389 20 6 1.3021 -5.4910 3.0060 21 6 -0.0708 -6.0046 3.4443 22 6 0.7679 -5.1528 4.3992 23 1 -0.4849 0.8401 0.0039 24 1 -0.2756 -1.6980 -1.3041 25 1 1.0038 -2.6013 -2.1499 26 1 -1.0415 -3.8620 -2.0253 27 1 0.1237 -4.6117 -1.1056 28 1 3.1335 -3.0640 -1.8645 29 1 4.7388 -4.9295 -1.8691 30 1 4.7315 -6.5690 -0.0331 31 1 3.1239 -6.3408 1.8165 32 1 2.1136 -6.2158 2.9404 33 1 -0.9487 -5.5407 2.9946 34 1 -0.1629 -7.0676 3.6669 35 1 1.2275 -5.6554 5.2502 36 1 0.4413 -4.1284 4.5780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261082333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:02 Heat of formation + Delta-G solvation = -0.695892 kcal Electronic energy + Delta-G solvation = -18119.550788 eV Core-core repulsion = 15376.122082 eV Total energy + Delta-G solvation = -2743.428707 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15308 -38.94572 -36.80705 -36.04315 -34.15810 -32.36489 -30.67654 -28.97888 -25.86998 -24.87119 -23.48448 -23.31520 -22.00433 -21.06530 -19.16293 -18.43934 -17.22191 -16.70143 -16.45611 -16.12778 -15.83281 -15.57078 -15.39730 -14.78161 -14.71790 -14.45263 -13.89679 -13.21381 -13.10056 -13.06511 -12.74185 -12.59571 -12.43615 -12.35067 -12.22955 -11.89853 -11.42789 -11.22386 -10.97846 -10.88136 -10.51487 -9.55857 -9.34602 -8.79029 -8.08235 -6.24182 0.57764 0.69505 1.39292 1.39794 1.50525 2.32017 2.41663 2.82881 3.07977 3.17161 3.68256 4.02302 4.03973 4.06579 4.11505 4.19449 4.34643 4.49443 4.62716 4.72681 4.76149 4.83496 4.95035 4.99437 5.08310 5.22750 5.30233 5.47547 5.52857 5.62481 5.73069 5.96952 6.06948 6.10964 6.29949 6.57073 6.74020 6.79026 6.92150 7.43125 8.94715 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.008168 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.747384 B = 3427.112028 C = 3946.237801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.280 1.280 7 C -0.525 4.525 8 H 0.050 0.950 9 C 0.095 3.905 10 H 0.004 0.996 11 C 0.084 3.916 12 N -0.848 5.848 13 C -0.099 4.099 14 C -0.097 4.097 15 C -0.159 4.159 16 C -0.094 4.094 17 C -0.211 4.211 18 C 0.105 3.895 19 O -0.303 6.303 20 C -0.025 4.025 21 C -0.176 4.176 22 C -0.170 4.170 23 H 0.261 0.739 24 H 0.072 0.928 25 H -0.002 1.002 26 H 0.335 0.665 27 H 0.329 0.671 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -13.887 2.513 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.205 1.205 7 C -0.563 4.563 8 H 0.068 0.932 9 C 0.076 3.924 10 H 0.022 0.978 11 C -0.047 4.047 12 N -0.377 5.377 13 C -0.099 4.099 14 C -0.115 4.115 15 C -0.177 4.177 16 C -0.112 4.112 17 C -0.229 4.229 18 C 0.061 3.939 19 O -0.217 6.217 20 C -0.081 4.081 21 C -0.213 4.213 22 C -0.207 4.207 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.016 0.984 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.130 0.870 29 H 0.162 0.838 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.776 -13.270 3.203 14.462 hybrid contribution 0.540 1.067 -0.837 1.460 sum 5.316 -12.202 2.366 13.519 Atomic orbital electron populations 1.70056 1.07118 1.27103 1.50908 1.25772 0.95696 1.02349 0.94752 0.85606 0.78856 0.79377 0.78147 1.20491 1.19060 1.20491 1.21419 0.92688 0.91375 1.50855 0.93199 1.17429 0.91045 0.89980 0.93910 0.97830 1.21734 0.94973 0.92167 0.95819 1.58781 1.27191 1.04952 1.46791 1.19843 0.99847 0.96602 0.93646 1.20922 0.94931 0.98122 0.97501 1.21296 1.00175 0.95502 1.00741 1.21175 0.97988 0.99282 0.92763 1.21419 0.98928 0.99848 1.02706 1.19083 0.90829 0.95654 0.88371 1.86160 1.56341 1.44616 1.34596 1.23444 1.00213 0.93644 0.90776 1.23472 0.94056 1.01519 1.02224 1.23409 1.03168 1.01336 0.92773 0.92983 0.90980 0.98397 0.85309 0.85939 0.87033 0.83818 0.82505 0.83084 0.83695 0.90062 0.84696 0.84481 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.86 11.30 21.45 0.24 -54.62 16 2 C 0.01 0.75 5.29 84.65 0.45 1.20 16 3 Si 0.95 45.06 29.54 68.60 2.03 47.09 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.52 -30.38 8.25 25.60 0.21 -30.17 16 8 H 0.05 2.87 7.61 -2.91 -0.02 2.85 16 9 C 0.10 5.16 2.12 -12.29 -0.03 5.13 16 10 H 0.00 0.22 6.99 -2.39 -0.02 0.21 16 11 C 0.08 4.26 5.98 86.30 0.52 4.77 16 12 N -0.85 -36.86 9.62 -186.72 -1.80 -38.65 16 13 C -0.10 -4.49 3.78 -19.77 -0.07 -4.57 16 14 C -0.10 -3.84 8.66 22.25 0.19 -3.65 16 15 C -0.16 -4.89 10.04 22.28 0.22 -4.67 16 16 C -0.09 -2.57 10.04 22.25 0.22 -2.34 16 17 C -0.21 -6.52 9.19 22.36 0.21 -6.31 16 18 C 0.11 4.30 6.65 22.51 0.15 4.45 16 19 O -0.30 -12.86 9.16 -92.39 -0.85 -13.70 16 20 C -0.02 -0.74 6.21 30.59 0.19 -0.55 16 21 C -0.18 -4.41 10.48 30.59 0.32 -4.09 16 22 C -0.17 -4.31 10.48 30.59 0.32 -3.99 16 23 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 24 H 0.07 4.16 5.95 -2.39 -0.01 4.15 16 25 H 0.00 -0.10 7.21 -2.39 -0.02 -0.12 16 26 H 0.34 12.49 9.08 -89.69 -0.81 11.68 16 27 H 0.33 13.48 8.07 -89.69 -0.72 12.75 16 28 H 0.11 4.60 7.53 -2.91 -0.02 4.58 16 29 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.15 3.58 5.52 -2.91 -0.02 3.56 16 32 H 0.15 3.33 5.33 -2.39 -0.01 3.32 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -69.61 298.39 2.09 -67.52 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -0.43 Total: 37.16 kcal Atomic # 6 Polarization: -47.69 SS G_CDS: 2.90 Total: -44.79 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -1.55 Total: -93.27 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.85 Total: -13.70 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.61 2.09 -67.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.820 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds