Wall clock time and date at job start Mon Mar 30 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38255 * 120.06489 * 279.99587 * 13 10 9 15 15 C 1.38058 * 119.89720 * 180.02562 * 14 13 10 16 16 C 1.38643 * 120.29931 * 0.03443 * 15 14 13 17 17 C 1.37907 * 119.77594 * 359.77829 * 16 15 14 18 18 C 1.38064 * 120.06934 * 99.72361 * 13 10 9 19 19 C 1.50741 * 121.34648 * 180.36691 * 17 16 15 20 20 C 1.52973 * 109.75356 * 342.81911 * 19 17 16 21 21 O 1.43208 * 108.47449 * 49.26940 * 20 19 17 22 22 C 1.42721 * 113.15698 * 289.35169 * 21 20 19 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 27 27 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 28 28 H 1.07999 * 120.05418 * 0.09348 * 14 13 10 29 29 H 1.08002 * 119.84715 * 180.02562 * 15 14 13 30 30 H 1.08004 * 119.86547 * 0.02562 * 18 13 10 31 31 H 1.08992 * 109.42694 * 102.90985 * 19 17 16 32 32 H 1.09003 * 109.42513 * 222.79475 * 19 17 16 33 33 H 1.09008 * 109.63088 * 168.96127 * 20 19 17 34 34 H 1.08994 * 109.64301 * 289.56868 * 20 19 17 35 35 H 1.09006 * 109.33426 * 291.49219 * 22 21 20 36 36 H 1.08998 * 109.33944 * 171.98373 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0082 -3.6596 1.2448 13 6 1.4956 -4.9631 -0.1402 14 6 0.8933 -5.5290 0.9682 15 6 0.2081 -6.7212 0.8455 16 6 0.1214 -7.3548 -0.3846 17 6 0.7191 -6.7879 -1.4906 18 6 1.4043 -5.5895 -1.3672 19 6 0.6401 -7.4420 -2.8464 20 6 0.2285 -8.9070 -2.6904 21 8 -0.9204 -8.9673 -1.8376 22 6 -0.6248 -8.6604 -0.4754 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 3.5699 -2.8253 1.3248 27 1 2.3958 -3.7609 2.0403 28 1 0.9578 -5.0386 1.9283 29 1 -0.2625 -7.1623 1.7118 30 1 1.8715 -5.1454 -2.2338 31 1 -0.0970 -6.9215 -3.4576 32 1 1.6149 -7.3900 -3.3314 33 1 -0.0180 -9.3241 -3.6669 34 1 1.0465 -9.4719 -2.2435 35 1 -0.0128 -9.4562 -0.0508 36 1 -1.5551 -8.5844 0.0875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261082966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:12 Heat of formation + Delta-G solvation = -60.195480 kcal Electronic energy + Delta-G solvation = -17534.884190 eV Core-core repulsion = 14788.875388 eV Total energy + Delta-G solvation = -2746.008802 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24070 -39.05594 -36.84658 -34.59353 -33.91046 -32.02631 -30.47118 -29.86290 -27.22490 -25.40640 -24.72920 -23.18867 -22.48250 -20.10454 -18.79652 -17.85074 -17.35876 -16.81550 -16.64075 -16.51281 -15.61061 -15.45443 -15.16378 -14.82826 -14.32750 -14.29585 -14.17322 -13.98424 -13.43126 -13.20050 -13.01201 -12.93472 -12.54659 -12.37609 -12.22626 -11.83819 -11.83320 -11.52305 -11.19664 -10.65949 -10.62282 -9.69651 -9.55484 -9.19594 -8.25011 -6.37963 0.40969 0.47452 1.37319 1.38425 1.51177 2.36260 2.77101 2.97989 3.08103 3.66703 3.77411 3.86676 3.96794 4.12342 4.22056 4.30373 4.38816 4.48053 4.50720 4.62248 4.68757 4.78734 4.82280 4.94492 4.98799 5.12028 5.21132 5.30169 5.42495 5.51604 5.61056 5.71375 5.80846 6.09097 6.12843 6.17436 6.35472 6.68254 6.78689 7.32503 8.86410 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039220 B = 0.004734 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.742899 B = 5913.799404 C = 6073.506540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.013 3.987 10 C 0.139 3.861 11 H 0.068 0.932 12 N -0.827 5.827 13 C -0.070 4.070 14 C -0.124 4.124 15 C -0.111 4.111 16 C -0.143 4.143 17 C -0.084 4.084 18 C -0.133 4.133 19 C -0.114 4.114 20 C 0.060 3.940 21 O -0.395 6.395 22 C 0.107 3.893 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.017 1.017 26 H 0.345 0.655 27 H 0.334 0.666 28 H 0.121 0.879 29 H 0.149 0.851 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -17.159 -1.755 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.085 0.915 9 C -0.026 4.026 10 C 0.027 3.973 11 H 0.086 0.914 12 N -0.356 5.356 13 C -0.071 4.071 14 C -0.142 4.142 15 C -0.129 4.129 16 C -0.143 4.143 17 C -0.084 4.084 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.017 4.017 21 O -0.314 6.314 22 C 0.030 3.970 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.001 0.999 26 H 0.158 0.842 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.167 0.833 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.610 -17.763 -2.110 17.960 hybrid contribution -0.181 2.505 0.333 2.534 sum 1.429 -15.257 -1.778 15.427 Atomic orbital electron populations 1.70128 1.07988 1.27733 1.51406 1.25976 0.95643 1.03410 0.94566 0.85376 0.79240 0.78696 0.77589 1.18197 1.20771 1.20506 1.21590 0.93510 0.91644 1.50769 0.91542 1.19648 0.94539 0.93611 0.94791 1.20243 0.93358 0.90313 0.93396 0.91418 1.59260 1.27513 1.45392 1.03386 1.20050 0.97261 0.95495 0.94262 1.20990 0.98324 0.96552 0.98369 1.21193 0.99015 0.94955 0.97714 1.20478 1.00924 0.99314 0.93578 1.19716 0.97411 0.95013 0.96253 1.21055 1.01291 0.95793 0.97032 1.21180 1.03620 0.97243 0.93080 1.22793 0.88549 0.94332 0.95984 1.88018 1.34233 1.90024 1.19099 1.21504 1.00356 0.91487 0.83620 0.92815 0.98992 0.99878 0.84214 0.85343 0.86143 0.83315 0.86172 0.90197 0.88283 0.86120 0.91556 0.89965 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 2 C 0.00 0.12 5.46 84.66 0.46 0.59 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -29.61 8.55 25.60 0.22 -29.39 16 8 H 0.07 3.47 7.15 -2.91 -0.02 3.45 16 9 C 0.01 0.67 4.60 29.85 0.14 0.81 16 10 C 0.14 5.89 2.99 44.17 0.13 6.02 16 11 H 0.07 2.94 8.01 -2.38 -0.02 2.92 16 12 N -0.83 -31.34 9.02 -171.80 -1.55 -32.89 16 13 C -0.07 -2.69 4.95 -19.90 -0.10 -2.79 16 14 C -0.12 -4.27 9.29 22.23 0.21 -4.06 16 15 C -0.11 -3.16 9.67 22.32 0.22 -2.95 16 16 C -0.14 -3.95 5.80 -19.86 -0.12 -4.07 16 17 C -0.08 -2.50 5.78 -19.84 -0.11 -2.62 16 18 C -0.13 -4.66 9.30 22.31 0.21 -4.45 16 19 C -0.11 -2.58 6.00 29.85 0.18 -2.40 16 20 C 0.06 1.10 6.85 71.97 0.49 1.60 16 21 O -0.40 -9.23 10.80 -148.98 -1.61 -10.84 16 22 C 0.11 2.26 6.66 71.22 0.47 2.74 16 23 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 24 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 25 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H 0.34 13.16 7.90 -89.70 -0.71 12.46 16 27 H 0.33 12.10 7.36 -89.69 -0.66 11.44 16 28 H 0.12 3.99 6.68 -2.91 -0.02 3.97 16 29 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.12 4.01 8.04 -2.91 -0.02 3.99 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.07 1.08 8.07 -2.39 -0.02 1.06 16 35 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -66.56 296.43 1.27 -65.29 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.28 Total: 30.15 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 2.40 Total: -40.98 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -1.27 Total: -89.31 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.61 Total: -10.84 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -66.56 1.27 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.091 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds