Wall clock time and date at job start Mon Mar 30 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35961 * 116.99667 * 2 1 4 4 C 1.38302 * 120.06815 * 359.97438 * 3 2 1 5 5 C 1.38702 * 120.62563 * 179.80342 * 4 3 2 6 6 C 1.37730 * 120.31644 * 0.45606 * 5 4 3 7 7 C 1.50706 * 120.14886 * 179.80638 * 6 5 4 8 8 H 1.09000 * 109.47161 * 219.72416 * 7 6 5 9 9 N 1.46902 * 109.46577 * 339.72278 * 7 6 5 10 10 C 1.50697 * 109.47178 * 99.72050 * 7 6 5 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99815 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99524 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 120.00201 * 359.97438 * 12 10 7 15 15 H 1.48501 * 109.46772 * 90.00170 * 14 12 10 16 16 H 1.48500 * 109.47211 * 210.00042 * 14 12 10 17 17 H 1.48496 * 109.47202 * 330.00564 * 14 12 10 18 18 C 1.39514 * 119.70792 * 359.53142 * 6 5 4 19 19 C 1.46782 * 134.29943 * 180.22585 * 18 6 5 20 20 C 1.34008 * 106.18876 * 180.02562 * 19 18 6 21 21 O 1.34415 * 110.13435 * 0.02562 * 20 19 18 22 22 C 1.34893 * 110.87657 * 359.97438 * 21 20 19 23 23 H 1.09009 * 109.47051 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47660 * 299.99717 * 1 2 3 25 25 H 1.09005 * 109.47627 * 60.00124 * 1 2 3 26 26 H 1.07995 * 119.69048 * 0.04506 * 4 3 2 27 27 H 1.07998 * 119.84097 * 180.26180 * 5 4 3 28 28 H 1.00903 * 110.99827 * 60.00558 * 9 7 6 29 29 H 1.00905 * 110.99513 * 183.95166 * 9 7 6 30 30 H 0.97001 * 119.99599 * 180.02562 * 13 12 10 31 31 H 1.07994 * 126.90155 * 0.02562 * 19 18 6 32 32 H 1.07999 * 124.93075 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2942 2.3722 -0.0005 5 6 1.9117 3.6142 0.0036 6 6 3.2859 3.7073 -0.0013 7 6 3.9529 5.0587 -0.0012 8 1 4.8201 5.0359 -0.6611 9 7 3.0029 6.0736 -0.4759 10 6 4.3954 5.4004 1.3982 11 1 4.2124 4.7081 2.2067 12 6 5.0340 6.5970 1.6465 13 7 5.4206 6.8949 2.8677 14 14 5.3512 7.7941 0.2481 15 1 4.1984 8.7213 0.1192 16 1 6.5833 8.5727 0.5329 17 1 5.5241 7.0401 -1.0195 18 6 4.0577 2.5451 -0.0004 19 6 5.4999 2.2722 -0.0002 20 6 5.6278 0.9383 0.0003 21 8 4.4157 0.3573 -0.0002 22 6 3.4374 1.2860 -0.0004 23 1 -0.3634 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2160 2.3111 -0.0002 27 1 1.3122 4.5124 0.0074 28 1 2.1895 6.1143 0.1199 29 1 3.4450 6.9779 -0.5463 30 1 5.8695 7.7368 3.0424 31 1 6.2976 3.0003 -0.0004 32 1 6.5682 0.4072 0.0009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:04 Heat of formation + Delta-G solvation = 3.683426 kcal Electronic energy + Delta-G solvation = -17728.384346 eV Core-core repulsion = 14849.312446 eV Total energy + Delta-G solvation = -2879.071900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.91587 -39.11480 -37.19227 -34.35367 -31.93937 -31.78732 -29.59349 -28.60200 -27.03810 -26.03548 -23.06901 -21.74367 -21.67799 -19.54593 -17.85086 -17.07480 -16.84336 -16.28559 -15.93559 -15.41130 -15.05761 -14.69997 -14.36666 -13.63097 -13.06774 -12.90502 -12.53755 -12.41154 -12.13608 -11.86600 -11.75704 -11.58568 -11.04893 -10.84880 -10.76719 -10.30958 -10.10721 -9.55086 -9.31564 -8.79997 -8.08798 -7.72161 -7.07234 -6.24674 -4.28143 1.46730 1.92907 2.88923 3.10841 3.20751 3.25779 3.26020 3.49225 4.20892 4.27214 4.96822 5.03416 5.10267 5.22657 5.27067 5.40501 5.48411 5.59018 5.80298 5.86311 5.88135 6.02611 6.27321 6.59242 6.65356 6.76238 6.89919 7.15403 7.32477 7.35636 7.43509 7.81242 8.04157 8.24638 8.46352 8.83680 9.33904 10.87893 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028854 B = 0.007303 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.161887 B = 3832.974033 C = 4380.960594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.110 3.890 4 C -0.180 4.180 5 C -0.102 4.102 6 C -0.004 4.004 7 C 0.211 3.789 8 H 0.053 0.947 9 N -0.850 5.850 10 C -0.541 4.541 11 H 0.076 0.924 12 C 0.073 3.927 13 N -0.889 5.889 14 Si 0.871 3.129 15 H -0.275 1.275 16 H -0.290 1.290 17 H -0.259 1.259 18 C -0.089 4.089 19 C -0.184 4.184 20 C -0.016 4.016 21 O -0.195 6.195 22 C 0.025 3.975 23 H 0.094 0.906 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.331 0.669 29 H 0.318 0.682 30 H 0.266 0.734 31 H 0.160 0.840 32 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -9.563 -6.488 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.066 3.934 4 C -0.199 4.199 5 C -0.121 4.121 6 C -0.005 4.005 7 C 0.102 3.898 8 H 0.070 0.930 9 N -0.383 5.383 10 C -0.580 4.580 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.526 5.526 14 Si 0.700 3.300 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.183 1.183 18 C -0.091 4.091 19 C -0.203 4.203 20 C -0.080 4.080 21 O -0.097 6.097 22 C -0.022 4.022 23 H 0.113 0.887 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.144 0.856 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.178 0.822 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.766 -10.338 -7.040 13.772 hybrid contribution 0.343 1.526 0.483 1.637 sum -5.424 -8.811 -6.557 12.249 Atomic orbital electron populations 1.22975 0.78937 1.03346 1.01270 1.86079 1.20862 1.26770 1.89807 1.17493 0.86565 0.85026 1.04362 1.20864 0.99174 0.91275 1.08599 1.20585 0.94057 0.96436 1.01016 1.19447 0.92399 0.94139 0.94520 1.18379 0.90665 0.85372 0.95395 0.92956 1.59757 1.11378 1.09766 1.57441 1.21572 1.38766 1.04470 0.93227 0.90573 1.25027 0.94629 0.97914 0.95450 1.69897 1.39257 1.23939 1.19530 0.87034 0.77946 0.81666 0.83364 1.20121 1.21725 1.18349 1.19518 0.93107 0.92005 1.04460 1.22573 0.95157 0.95574 1.06957 1.23823 0.86863 0.93109 1.04239 1.83977 1.13567 1.35229 1.76905 1.18628 0.87387 0.87308 1.08863 0.88728 0.92768 0.92841 0.85072 0.84958 0.85592 0.86595 0.92378 0.82241 0.78012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.22 10.50 -19.62 -0.21 -5.42 16 3 C 0.11 2.00 6.70 -39.15 -0.26 1.74 16 4 C -0.18 -3.03 9.03 -39.39 -0.36 -3.39 16 5 C -0.10 -1.95 9.25 -39.60 -0.37 -2.31 16 6 C 0.00 -0.09 5.05 -104.33 -0.53 -0.62 16 7 C 0.21 4.96 2.40 -70.01 -0.17 4.79 16 8 H 0.05 1.28 7.20 -51.93 -0.37 0.91 16 9 N -0.85 -18.29 8.63 -6.65 -0.06 -18.34 16 10 C -0.54 -14.74 9.29 -34.44 -0.32 -15.06 16 11 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 14 Si 0.87 20.50 24.61 -169.99 -4.18 16.32 16 15 H -0.27 -6.20 7.01 56.52 0.40 -5.80 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 18 C -0.09 -1.88 6.16 -105.17 -0.65 -2.53 16 19 C -0.18 -3.42 11.02 -37.62 -0.41 -3.83 16 20 C -0.02 -0.25 11.96 29.24 0.35 0.10 16 21 O -0.19 -3.62 10.58 3.76 0.04 -3.58 16 22 C 0.03 0.51 7.35 -38.38 -0.28 0.22 16 23 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 24 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.13 1.73 6.26 -52.49 -0.33 1.40 16 27 H 0.13 2.31 6.24 -52.49 -0.33 1.98 16 28 H 0.33 6.68 7.28 -39.29 -0.29 6.40 16 29 H 0.32 6.97 4.30 -39.29 -0.17 6.80 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 31 H 0.16 2.84 8.06 -52.49 -0.42 2.42 16 32 H 0.20 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 269.57 15.07 4.06 4.06 Total: -1.00 -32.00 269.57 -4.81 -36.81 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -3.14 Total: 13.33 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.10 Total: -17.63 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.72 Total: -43.89 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.17 Total: -9.00 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.18 Total: 16.32 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.00 -4.81 -36.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.495 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds