Wall clock time and date at job start Mon Mar 30 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35958 * 116.99869 * 2 1 4 4 C 1.38304 * 120.07049 * 359.97438 * 3 2 1 5 5 C 1.38697 * 120.62778 * 180.02562 * 4 3 2 6 6 C 1.37739 * 120.31773 * 359.94673 * 5 4 3 7 7 C 1.50701 * 120.14616 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 145.00565 * 7 6 5 9 9 N 1.46901 * 109.46921 * 25.00384 * 7 6 5 10 10 C 1.50699 * 109.47269 * 265.00418 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47319 * 60.00570 * 14 12 10 16 16 H 1.48503 * 109.46734 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47266 * 300.00384 * 14 12 10 18 18 C 1.39509 * 119.70606 * 0.30461 * 6 5 4 19 19 C 1.46788 * 134.29907 * 180.37935 * 18 6 5 20 20 C 1.34005 * 106.18955 * 179.52402 * 19 18 6 21 21 O 1.34426 * 110.13247 * 359.78858 * 20 19 18 22 22 C 1.34881 * 110.87544 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.46960 * 300.00600 * 1 2 3 24 24 H 1.08999 * 109.46722 * 59.99917 * 1 2 3 25 25 H 1.08993 * 109.46827 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.68729 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.83974 * 179.97438 * 5 4 3 28 28 H 1.00898 * 111.00245 * 299.99784 * 9 7 6 29 29 H 1.00904 * 111.00313 * 63.95601 * 9 7 6 30 30 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 31 31 H 1.07997 * 126.90131 * 359.35126 * 19 18 6 32 32 H 1.07997 * 124.93149 * 179.74248 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2944 2.3722 -0.0005 5 6 1.9120 3.6141 -0.0011 6 6 3.2863 3.7072 0.0000 7 6 3.9533 5.0586 0.0000 8 1 4.8685 5.0120 0.5902 9 7 3.0439 6.0534 0.5843 10 6 4.2877 5.4537 -1.4153 11 1 4.0415 4.7926 -2.2330 12 6 4.9071 6.6597 -1.6662 13 7 5.2065 7.4650 -0.6705 14 14 5.3210 7.1498 -3.4207 15 1 4.0739 7.2130 -4.2243 16 1 5.9784 8.4814 -3.4206 17 1 6.2404 6.1444 -4.0117 18 6 4.0579 2.5450 -0.0048 19 6 5.5002 2.2720 0.0017 20 6 5.6280 0.9381 0.0023 21 8 4.4157 0.3572 0.0016 22 6 3.4377 1.2860 0.0010 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2162 2.3111 -0.0005 27 1 1.3125 4.5124 -0.0019 28 1 2.1873 6.1155 0.0547 29 1 2.8555 5.8460 1.5536 30 1 5.6425 8.3133 -0.8470 31 1 6.2980 3.0000 0.0026 32 1 6.5683 0.4069 0.0026 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261085560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:07 Heat of formation + Delta-G solvation = -21.950024 kcal Electronic energy + Delta-G solvation = -17675.180854 eV Core-core repulsion = 14794.997405 eV Total energy + Delta-G solvation = -2880.183450 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.33094 -40.40987 -38.63689 -35.72437 -33.51044 -33.25258 -30.89077 -29.83518 -28.17133 -27.71152 -24.72929 -23.22746 -23.04677 -21.13875 -19.11844 -18.52263 -18.20577 -17.53653 -17.27224 -16.65095 -16.25205 -16.20253 -15.80870 -15.50728 -14.61819 -14.29403 -14.03473 -13.73511 -13.47705 -13.20851 -13.07628 -12.84466 -12.68038 -12.45230 -12.12625 -12.10679 -11.66002 -11.15119 -10.70007 -10.53735 -9.53620 -8.97390 -8.58779 -7.95915 -6.18662 0.05525 0.39664 1.43279 1.43438 1.50005 1.51766 1.86891 2.31422 2.45398 2.78114 3.25495 3.72111 3.90314 3.91708 4.17621 4.37000 4.40756 4.42208 4.49663 4.51343 4.63673 4.73763 4.84171 5.15266 5.24776 5.28851 5.47461 5.68043 5.73994 5.78977 6.00072 6.20165 6.47791 6.66570 7.10494 7.26918 7.53102 9.05540 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.025979 B = 0.007052 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.537082 B = 3969.428730 C = 4399.940976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.114 3.886 4 C -0.174 4.174 5 C -0.117 4.117 6 C -0.088 4.088 7 C 0.270 3.730 8 H 0.011 0.989 9 N -0.819 5.819 10 C -0.538 4.538 11 H 0.038 0.962 12 C 0.039 3.961 13 N -0.878 5.878 14 Si 0.944 3.056 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.275 1.275 18 C -0.111 4.111 19 C -0.226 4.226 20 C 0.018 3.982 21 O -0.201 6.201 22 C -0.003 4.003 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.171 0.829 27 H 0.138 0.862 28 H 0.325 0.675 29 H 0.313 0.687 30 H 0.256 0.744 31 H 0.155 0.845 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 -13.161 2.034 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.069 3.931 4 C -0.192 4.192 5 C -0.136 4.136 6 C -0.091 4.091 7 C 0.160 3.840 8 H 0.029 0.971 9 N -0.347 5.347 10 C -0.576 4.576 11 H 0.057 0.943 12 C -0.164 4.164 13 N -0.514 5.514 14 Si 0.770 3.230 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.201 1.201 18 C -0.113 4.113 19 C -0.245 4.245 20 C -0.046 4.046 21 O -0.103 6.103 22 C -0.050 4.050 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.141 0.859 26 H 0.188 0.812 27 H 0.155 0.845 28 H 0.139 0.861 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.173 0.827 32 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.185 -12.900 1.938 14.436 hybrid contribution -0.266 0.093 -0.747 0.799 sum -6.450 -12.806 1.191 14.388 Atomic orbital electron populations 1.23397 0.75995 1.05779 1.02515 1.86076 1.23867 1.25728 1.89362 1.17691 0.86339 0.86192 1.02858 1.21146 1.00912 0.89853 1.07337 1.20806 0.93297 0.97956 1.01502 1.21002 0.94186 0.96640 0.97238 1.17659 0.90345 0.81785 0.94248 0.97100 1.58974 1.18171 1.53614 1.03940 1.20970 1.41100 1.03745 0.91805 0.94348 1.25604 0.94790 0.96287 0.99753 1.70208 1.39425 1.09817 1.31913 0.85871 0.78397 0.77328 0.81425 1.19973 1.20754 1.20081 1.19942 0.94452 0.92463 1.04428 1.22718 0.94516 0.97035 1.10227 1.24746 0.87460 0.92376 1.00020 1.83986 1.14247 1.35340 1.76745 1.19043 0.88557 0.87326 1.10078 0.91331 0.91633 0.85920 0.81223 0.84466 0.86108 0.87605 0.93482 0.82745 0.72677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -10.06 10.50 -93.08 -0.98 -11.04 16 3 C 0.11 3.98 6.70 22.55 0.15 4.13 16 4 C -0.17 -5.48 9.03 22.40 0.20 -5.27 16 5 C -0.12 -4.36 9.26 22.26 0.21 -4.15 16 6 C -0.09 -3.90 5.01 -19.68 -0.10 -3.99 16 7 C 0.27 13.74 2.78 43.42 0.12 13.86 16 8 H 0.01 0.64 8.06 -2.39 -0.02 0.62 16 9 N -0.82 -38.48 8.13 -174.95 -1.42 -39.90 16 10 C -0.54 -30.12 8.71 25.60 0.22 -29.90 16 11 H 0.04 2.20 7.74 -2.91 -0.02 2.18 16 12 C 0.04 2.21 5.39 84.65 0.46 2.67 16 13 N -0.88 -51.49 12.77 21.45 0.27 -51.21 16 14 Si 0.94 44.20 29.54 68.60 2.03 46.23 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 18 C -0.11 -4.77 6.16 -20.22 -0.12 -4.89 16 19 C -0.23 -8.56 10.96 23.54 0.26 -8.30 16 20 C 0.02 0.54 11.96 66.86 0.80 1.34 16 21 O -0.20 -7.20 10.58 -9.44 -0.10 -7.30 16 22 C 0.00 -0.12 7.35 23.05 0.17 0.05 16 23 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 24 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 25 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.17 3.84 6.26 -2.91 -0.02 3.82 16 27 H 0.14 4.65 6.28 -2.91 -0.02 4.64 16 28 H 0.33 14.24 7.21 -89.70 -0.65 13.59 16 29 H 0.31 13.10 9.06 -89.69 -0.81 12.29 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.15 5.88 8.06 -2.91 -0.02 5.85 16 32 H 0.26 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -70.71 278.46 2.98 -67.73 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.29 Total: 28.54 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 3.48 Total: -33.05 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -1.15 Total: -91.12 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -1.08 Total: -18.34 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.71 2.98 -67.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.779 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds